Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48508 * 109.47011 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47314 * 150.00418 * 3 2 1 7 7 C 1.38814 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99585 * 359.97438 * 7 2 1 10 10 C 1.49296 * 127.10574 * 0.02562 * 9 7 2 11 11 C 1.56233 * 106.50740 * 188.65761 * 10 9 7 12 12 C 1.52130 * 100.81289 * 23.44898 * 11 10 9 13 13 N 1.46500 * 111.09018 * 73.95455 * 12 11 10 14 14 C 1.34777 * 119.99414 * 71.69622 * 13 12 11 15 15 O 1.21500 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.48280 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.47494 * 128.71200 * 179.69483 * 16 14 13 18 18 N 1.30648 * 102.71758 * 179.91094 * 17 16 14 19 19 O 1.20846 * 109.61588 * 0.37373 * 18 17 16 20 20 N 1.20903 * 115.90842 * 359.73551 * 19 18 17 21 21 C 1.51370 * 122.13637 * 208.74291 * 12 11 10 22 22 C 1.55699 * 104.53434 * 141.24327 * 21 12 11 23 23 C 1.56276 * 105.99651 * 352.81222 * 22 21 12 24 24 C 1.42707 * 127.10091 * 180.02562 * 9 7 2 25 25 H 1.08998 * 107.79492 * 256.39823 * 24 9 7 26 26 H 0.97006 * 120.00196 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.04878 * 69.39508 * 10 9 7 28 28 H 1.08997 * 110.04231 * 307.91959 * 10 9 7 29 29 H 1.08994 * 111.14960 * 265.55692 * 11 10 9 30 30 H 1.09003 * 111.14213 * 141.33310 * 11 10 9 31 31 H 0.96998 * 120.00361 * 251.70701 * 13 12 11 32 32 H 1.07994 * 128.63677 * 0.05056 * 17 16 14 33 33 H 1.09002 * 110.41935 * 22.49967 * 21 12 11 34 34 H 1.09003 * 110.46981 * 260.01342 * 21 12 11 35 35 H 1.09002 * 110.16021 * 233.65869 * 22 21 12 36 36 H 1.08995 * 110.15555 * 111.96513 * 22 21 12 37 37 H 1.09004 * 110.97489 * 93.82210 * 23 22 21 38 38 H 1.09002 * 110.97170 * 217.58946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1560 -2.5727 -0.0005 11 6 -0.4133 -4.0971 0.2249 12 6 0.8805 -4.5063 0.9126 13 7 0.9156 -4.0285 2.2971 14 6 0.1240 -4.5987 3.2269 15 8 -0.6184 -5.5092 2.9171 16 6 0.1599 -4.1155 4.6283 17 6 -0.6188 -4.5895 5.7878 18 7 -0.1904 -3.8227 6.7549 19 8 0.6377 -3.0539 6.3265 20 7 0.8903 -3.1521 5.1483 21 6 1.4467 -5.9053 0.7962 22 6 2.9857 -5.6961 0.6866 23 6 3.2027 -4.1537 0.5604 24 6 1.8808 -3.7027 -0.0005 25 1 1.7856 -4.1045 -1.0093 26 1 -0.4851 0.8401 -0.0004 27 1 -0.5713 -2.2613 -0.9590 28 1 -0.6045 -1.9944 0.8072 29 1 -0.5369 -4.6196 -0.7236 30 1 -1.2727 -4.2587 0.8757 31 1 1.5085 -3.3017 2.5445 32 1 -1.3575 -5.3763 5.8277 33 1 1.0652 -6.3966 -0.0989 34 1 1.2047 -6.4896 1.6840 35 1 3.3717 -6.2034 -0.1976 36 1 3.4806 -6.0731 1.5815 37 1 3.3859 -3.7043 1.5365 38 1 4.0163 -3.9293 -0.1295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992368399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = 106.555107 kcal Electronic energy + Delta-G solvation = -24489.786621 eV Core-core repulsion = 20952.284983 eV Total energy + Delta-G solvation = -3537.501639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.97074 -42.05150 -39.71605 -36.20502 -35.88127 -35.52240 -34.48851 -33.58287 -31.63507 -28.58087 -27.85170 -26.71564 -25.94587 -25.09562 -22.68484 -22.06507 -21.29006 -20.26173 -20.10124 -19.62838 -18.66515 -18.35309 -17.44634 -16.51742 -16.37730 -16.12578 -15.85794 -15.72666 -15.37325 -15.13069 -14.22938 -14.09300 -13.85307 -13.58652 -13.07635 -13.01354 -12.97030 -12.87786 -12.68652 -12.42679 -12.23730 -12.14653 -12.07949 -11.87261 -11.80903 -11.61557 -11.45323 -11.34142 -10.88839 -10.72549 -10.12365 -8.89184 -7.86039 -5.21299 -0.32522 0.31453 1.46491 1.46845 1.55184 1.59373 1.88123 2.38240 2.47324 2.49072 2.91481 3.03787 3.34635 3.66475 3.75133 3.80643 3.85701 4.07212 4.24615 4.35818 4.40509 4.44008 4.55524 4.60640 4.76809 4.91177 4.92783 5.04860 5.09950 5.20392 5.25249 5.47299 5.52933 5.53679 5.60821 5.72054 6.16462 6.32274 6.90088 7.03339 7.35120 7.75540 8.46479 9.25506 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.006616 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.980202 B = 4231.379402 C = 5395.049546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.187 3.813 11 C -0.127 4.127 12 C 0.135 3.865 13 N -0.671 5.671 14 C 0.604 3.396 15 O -0.536 6.536 16 C -0.058 4.058 17 C 0.059 3.941 18 N -0.363 5.363 19 O 0.340 5.660 20 N -0.329 5.329 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.113 4.113 24 C 0.147 3.853 25 H 0.027 0.973 26 H 0.245 0.755 27 H 0.004 0.996 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.405 0.595 32 H 0.261 0.739 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -13.016 7.424 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.322 5.322 10 C 0.063 3.937 11 C -0.166 4.166 12 C 0.048 3.952 13 N -0.321 5.321 14 C 0.387 3.613 15 O -0.413 6.413 16 C -0.223 4.223 17 C -0.127 4.127 18 N -0.090 5.090 19 O 0.115 5.885 20 N -0.047 5.047 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.152 4.152 24 C 0.038 3.962 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.241 0.759 32 H 0.277 0.723 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.816 -12.588 7.780 15.064 hybrid contribution -0.245 1.297 -0.599 1.449 sum 2.571 -11.291 7.181 13.626 Atomic orbital electron populations 1.70121 1.06298 1.25109 1.58337 1.25546 0.96364 1.00776 1.02818 0.85193 0.77850 0.79721 0.77281 1.21594 1.22740 1.19140 1.19363 0.90835 0.83205 1.42547 0.89491 1.43816 1.01960 1.00436 1.86028 1.21725 0.83291 0.91062 0.97671 1.22677 0.96936 0.96441 1.00520 1.21736 0.97365 0.95947 0.80147 1.45670 1.41192 1.36737 1.08483 1.16574 0.80773 0.82348 0.81604 1.90772 1.40300 1.29926 1.80270 1.26373 0.99379 0.97243 0.99278 1.28224 1.00338 1.00595 0.83548 1.75063 1.05136 1.04158 1.24593 1.85096 1.41967 1.44227 1.17260 1.75459 1.18849 1.15997 0.94396 1.21926 0.95828 0.93443 1.03266 1.22772 0.94583 0.93659 1.03160 1.21885 0.96197 0.96484 1.00631 1.21105 0.94065 0.85231 0.95846 0.95562 0.94614 0.97758 0.95508 0.89230 0.91693 0.75879 0.72302 0.89088 0.91137 0.89346 0.90609 0.92417 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.15 10.55 21.65 0.23 -55.92 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -12.15 10.29 84.03 0.86 -11.29 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.60 -28.60 3.12 -668.60 -2.09 -30.68 16 10 C 0.19 9.01 5.33 86.96 0.46 9.48 16 11 C -0.13 -4.76 6.20 31.43 0.19 -4.56 16 12 C 0.14 4.53 0.40 4.37 0.00 4.53 16 13 N -0.67 -22.95 4.39 -421.88 -1.85 -24.80 16 14 C 0.60 19.47 7.17 86.91 0.62 20.09 16 15 O -0.54 -18.22 15.20 -3.72 -0.06 -18.28 16 16 C -0.06 -1.63 7.56 44.29 0.34 -1.30 16 17 C 0.06 1.25 12.63 87.31 1.10 2.36 16 18 N -0.36 -8.50 12.22 -61.41 -0.75 -9.25 16 19 O 0.34 8.87 11.65 140.84 1.64 10.51 16 20 N -0.33 -9.70 12.13 -52.04 -0.63 -10.33 16 21 C -0.11 -2.79 6.06 30.99 0.19 -2.60 16 22 C -0.10 -2.38 6.93 32.67 0.23 -2.15 16 23 C -0.11 -3.39 6.47 30.93 0.20 -3.19 16 24 C 0.15 5.46 2.61 46.47 0.12 5.58 16 25 H 0.03 1.02 7.98 -2.39 -0.02 1.00 16 26 H 0.24 14.28 8.31 -92.70 -0.77 13.51 16 27 H 0.00 0.22 7.98 -2.39 -0.02 0.21 16 28 H 0.03 1.48 7.05 -2.39 -0.02 1.46 16 29 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.06 2.48 7.17 -2.39 -0.02 2.47 16 31 H 0.41 14.95 7.66 -92.71 -0.71 14.24 16 32 H 0.26 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.90 6.86 -2.39 -0.02 1.88 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.81 7.38 -2.38 -0.02 1.80 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -63.96 314.26 3.70 -60.26 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.39 Total: 17.49 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 4.79 Total: 13.99 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.09 Total: -130.98 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 1.58 Total: -7.77 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.96 3.70 -60.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992368399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.818 kcal (2) G-P(sol) polarization free energy of solvation -63.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds