Wall clock time and date at job start Tue Mar 31 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00158 * 2 1 4 4 H 1.48495 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46991 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47132 * 59.99530 * 3 2 1 7 7 C 1.38817 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 325.63777 * 7 2 1 9 9 N 1.36933 * 119.99751 * 145.63931 * 7 2 1 10 10 C 1.47022 * 125.65341 * 333.90252 * 9 7 2 11 11 C 1.54318 * 107.27253 * 181.02674 * 10 9 7 12 12 C 1.55152 * 102.94511 * 22.18990 * 11 10 9 13 13 H 1.08999 * 111.00102 * 82.61117 * 12 11 10 14 14 N 1.46497 * 111.00405 * 206.42339 * 12 11 10 15 15 C 1.34777 * 120.00122 * 204.99989 * 14 12 11 16 16 O 1.21283 * 119.99650 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00095 * 180.02562 * 15 14 12 18 18 C 1.50702 * 109.46999 * 180.02562 * 17 15 14 19 19 C 1.38243 * 119.97134 * 269.72612 * 18 17 15 20 20 C 1.38203 * 120.02539 * 179.72905 * 19 18 17 21 21 C 1.38458 * 119.96853 * 0.56169 * 20 19 18 22 22 F 1.35103 * 120.02571 * 179.68282 * 21 20 19 23 23 C 1.38454 * 119.95476 * 359.70936 * 21 20 19 24 24 C 1.38201 * 119.97221 * 359.97438 * 23 21 20 25 25 C 1.47424 * 125.64655 * 153.59410 * 9 7 2 26 26 H 0.97006 * 120.00091 * 185.06140 * 1 2 3 27 27 H 1.09006 * 109.87604 * 300.44400 * 10 9 7 28 28 H 1.08998 * 109.88202 * 61.60101 * 10 9 7 29 29 H 1.09001 * 110.71977 * 140.56146 * 11 10 9 30 30 H 1.09005 * 110.71624 * 263.82389 * 11 10 9 31 31 H 0.97003 * 120.00083 * 25.00594 * 14 12 11 32 32 H 1.09000 * 109.46958 * 299.99499 * 17 15 14 33 33 H 1.08997 * 109.47389 * 60.00040 * 17 15 14 34 34 H 1.08000 * 119.98777 * 359.97438 * 19 18 17 35 35 H 1.07998 * 120.01641 * 180.25786 * 20 19 18 36 36 H 1.08003 * 120.01583 * 180.02562 * 23 21 20 37 37 H 1.07999 * 119.98721 * 180.02562 * 24 23 21 38 38 H 1.09000 * 110.36988 * 274.74606 * 25 9 7 39 39 H 1.09005 * 110.36594 * 37.06989 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.6116 -2.0557 0.5289 9 7 3.2004 -1.3059 -0.6687 10 6 3.6072 -0.4934 -1.8245 11 6 5.0068 -0.9793 -2.2564 12 6 5.0705 -2.4163 -1.6747 13 1 4.5754 -3.1276 -2.3357 14 7 6.4558 -2.8181 -1.4187 15 6 6.7868 -4.1245 -1.4038 16 8 5.9378 -4.9674 -1.6030 17 6 8.2118 -4.5379 -1.1399 18 6 8.3141 -6.0410 -1.1781 19 6 8.1358 -6.7750 -0.0203 20 6 8.2238 -8.1538 -0.0552 21 6 8.5022 -8.7991 -1.2482 22 9 8.5948 -10.1465 -1.2824 23 6 8.6861 -8.0626 -2.4061 24 6 8.5911 -6.6843 -2.3700 25 6 4.2887 -2.2464 -0.3457 26 1 -0.4850 -0.8368 0.0741 27 1 2.8987 -0.6303 -2.6416 28 1 3.6509 0.5583 -1.5414 29 1 5.0898 -0.9990 -3.3431 30 1 5.7843 -0.3519 -1.8205 31 1 7.1349 -2.1439 -1.2597 32 1 8.8615 -4.1104 -1.9035 33 1 8.5188 -4.1774 -0.1581 34 1 7.9237 -6.2711 0.9110 35 1 8.0804 -8.7274 0.8485 36 1 8.9029 -8.5649 -3.3372 37 1 8.7342 -6.1095 -3.2731 38 1 4.9346 -1.8285 0.4264 39 1 3.8793 -3.2034 -0.0219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016148489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:50 Heat of formation + Delta-G solvation = -31.794190 kcal Electronic energy + Delta-G solvation = -22382.106496 eV Core-core repulsion = 18818.685620 eV Total energy + Delta-G solvation = -3563.420876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.08164 -40.15982 -38.91337 -37.41526 -34.12572 -32.87496 -32.10763 -31.37104 -29.51531 -28.24447 -26.90212 -23.89700 -23.30915 -22.18561 -20.74378 -20.51202 -20.07332 -17.90700 -17.60185 -16.99798 -16.67491 -16.41482 -15.76635 -15.59776 -15.13362 -14.78964 -14.48049 -14.10100 -13.80315 -13.68779 -13.52090 -13.30620 -12.76957 -12.62178 -12.38658 -12.17187 -12.10358 -11.91122 -11.37387 -11.22902 -10.99948 -10.91008 -10.65588 -10.41800 -9.84766 -9.60812 -9.32358 -9.29571 -8.90867 -8.77256 -8.25269 -7.08226 -6.32024 -3.26259 0.88389 1.02027 2.66833 3.08897 3.43327 3.49201 3.53193 3.64928 4.04522 4.35801 4.43873 4.58378 4.66063 4.81585 4.87151 4.97436 4.99697 5.20191 5.20583 5.27169 5.30303 5.44898 5.58260 5.65296 5.75127 5.88760 5.92750 5.97203 5.98370 6.12629 6.24270 6.42444 6.54429 6.64533 6.66118 6.80300 6.83259 7.57939 7.90520 8.29130 8.37779 9.01670 9.60236 10.33242 11.05323 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034044 B = 0.002886 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.266760 B = 9700.681109 C =10072.415301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.006 4.006 3 Si 1.051 2.949 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.343 4.343 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.125 3.875 11 C -0.136 4.136 12 C 0.128 3.872 13 H 0.099 0.901 14 N -0.719 5.719 15 C 0.511 3.489 16 O -0.530 6.530 17 C -0.103 4.103 18 C -0.073 4.073 19 C -0.075 4.075 20 C -0.152 4.152 21 C 0.094 3.906 22 F -0.143 7.143 23 C -0.153 4.153 24 C -0.077 4.077 25 C 0.122 3.878 26 H 0.266 0.734 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.021 0.979 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.003 -10.020 -4.017 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.210 4.210 3 Si 0.882 3.118 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.470 4.470 8 H 0.084 0.916 9 N -0.329 5.329 10 C -0.001 4.001 11 C -0.174 4.174 12 C 0.023 3.977 13 H 0.117 0.883 14 N -0.370 5.370 15 C 0.296 3.704 16 O -0.405 6.405 17 C -0.142 4.142 18 C -0.074 4.074 19 C -0.093 4.093 20 C -0.170 4.170 21 C 0.075 3.925 22 F -0.121 7.121 23 C -0.172 4.172 24 C -0.095 4.095 25 C -0.005 4.005 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.039 0.961 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.076 -9.061 -4.181 24.227 hybrid contribution 0.480 -1.474 0.259 1.572 sum 22.556 -10.535 -3.922 25.202 Atomic orbital electron populations 1.70909 1.06410 1.30610 1.46064 1.26081 0.96157 1.00994 0.97740 0.84006 0.75401 0.75926 0.76466 1.20678 1.21896 1.22544 1.19788 0.95524 0.97290 1.34401 0.91559 1.44599 1.15257 1.41809 1.31197 1.21599 0.92173 0.95456 0.90848 1.22849 0.99008 0.95198 1.00379 1.22300 0.80783 0.95981 0.98629 0.88310 1.45974 1.11134 1.07071 1.72799 1.20462 0.90246 0.82627 0.77052 1.90760 1.51162 1.50562 1.48043 1.20685 0.95241 0.93118 1.05204 1.19352 1.00056 0.94328 0.93642 1.20886 0.97139 0.92871 0.98444 1.21107 1.03372 0.95334 0.97227 1.17728 1.02806 0.76866 0.95117 1.91492 1.93800 1.29556 1.97287 1.21085 1.03951 0.94581 0.97549 1.20843 0.97635 0.93441 0.97543 1.21995 0.90413 0.94835 0.93270 0.92298 0.94334 0.94978 0.90947 0.91297 0.76800 0.87785 0.87668 0.85001 0.84717 0.84782 0.85130 0.96114 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.70 55.49 0.76 -27.29 16 2 C -0.01 -0.17 5.29 -17.43 -0.09 -0.27 16 3 Si 1.05 25.99 26.22 -169.99 -4.46 21.53 16 4 H -0.28 -6.45 6.18 56.52 0.35 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.34 -9.95 10.24 -15.06 -0.15 -10.11 16 8 H 0.07 2.06 8.06 -52.48 -0.42 1.64 16 9 N -0.60 -14.94 3.05 -169.93 -0.52 -15.46 16 10 C 0.12 2.66 6.04 -3.07 -0.02 2.64 16 11 C -0.14 -2.12 6.59 -24.90 -0.16 -2.28 16 12 C 0.13 2.13 3.44 -65.67 -0.23 1.90 16 13 H 0.10 1.84 7.54 -51.93 -0.39 1.45 16 14 N -0.72 -8.81 5.19 -51.62 -0.27 -9.08 16 15 C 0.51 6.55 7.82 -10.98 -0.09 6.46 16 16 O -0.53 -9.39 15.67 5.55 0.09 -9.31 16 17 C -0.10 -0.83 5.83 -29.03 -0.17 -1.00 16 18 C -0.07 -0.72 4.37 -104.62 -0.46 -1.18 16 19 C -0.08 -0.75 9.70 -39.59 -0.38 -1.13 16 20 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 21 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 22 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 23 C -0.15 -1.50 10.03 -39.52 -0.40 -1.90 16 24 C -0.08 -0.73 9.70 -39.59 -0.38 -1.11 16 25 C 0.12 2.54 6.93 -2.41 -0.02 2.52 16 26 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.71 3.85 -51.93 -0.20 0.51 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 31 H 0.40 3.50 8.57 -40.82 -0.35 3.15 16 32 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -35.09 330.54 -7.82 -42.91 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.21 Total: -0.02 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.23 Total: -6.66 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.03 Total: -51.83 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.46 Total: 21.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.09 -7.82 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016148489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.112 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds