Wall clock time and date at job start Tue Mar 31 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 11 11 C 1.55124 * 104.72581 * 155.81877 * 10 9 7 12 12 C 1.55157 * 101.48746 * 37.28923 * 11 10 9 13 13 H 1.09004 * 110.87304 * 205.90118 * 12 11 10 14 14 N 1.46505 * 110.71616 * 82.70244 * 12 11 10 15 15 C 1.34772 * 119.99839 * 160.02709 * 14 12 11 16 16 O 1.21283 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00111 * 179.97438 * 15 14 12 18 18 C 1.50701 * 109.47524 * 179.97438 * 17 15 14 19 19 C 1.38240 * 119.97365 * 269.73081 * 18 17 15 20 20 C 1.38204 * 120.02006 * 179.72498 * 19 18 17 21 21 C 1.38453 * 119.97679 * 0.56305 * 20 19 18 22 22 F 1.35106 * 120.02755 * 179.68057 * 21 20 19 23 23 C 1.38455 * 119.94662 * 359.71199 * 21 20 19 24 24 C 1.38194 * 119.97731 * 359.97438 * 23 21 20 25 25 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09007 * 110.36232 * 274.74242 * 10 9 7 28 28 H 1.09000 * 110.36555 * 37.06453 * 10 9 7 29 29 H 1.09004 * 111.18844 * 279.18730 * 11 10 9 30 30 H 1.08997 * 110.94432 * 155.28923 * 11 10 9 31 31 H 0.97000 * 119.99842 * 340.01694 * 14 12 11 32 32 H 1.08997 * 109.47254 * 300.00249 * 17 15 14 33 33 H 1.09003 * 109.47056 * 59.99837 * 17 15 14 34 34 H 1.07998 * 119.99315 * 359.97438 * 19 18 17 35 35 H 1.08003 * 120.00803 * 180.25512 * 20 19 18 36 36 H 1.08003 * 120.01126 * 179.97438 * 23 21 20 37 37 H 1.08005 * 119.98833 * 180.02562 * 24 23 21 38 38 H 1.08998 * 109.88337 * 300.43606 * 25 9 7 39 39 H 1.08998 * 109.88121 * 61.45190 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4022 -3.9290 -0.6255 12 6 0.7782 -4.7522 -0.0455 13 1 1.0247 -5.5903 -0.6975 14 7 0.4665 -5.2238 1.3061 15 6 1.1462 -6.2624 1.8309 16 8 2.0158 -6.8070 1.1842 17 6 0.8260 -6.7471 3.2214 18 6 1.7206 -7.9096 3.5668 19 6 1.3177 -9.2004 3.2793 20 6 2.1399 -10.2668 3.5904 21 6 3.3623 -10.0429 4.2008 22 9 4.1640 -11.0851 4.5112 23 6 3.7622 -8.7500 4.4933 24 6 2.9413 -7.6847 4.1754 25 6 1.9317 -3.7275 -0.0138 26 1 -0.4850 0.8401 0.0004 27 1 -0.5227 -2.4944 1.0194 28 1 -0.6022 -1.7542 -0.6087 29 1 -0.3532 -3.8892 -1.7138 30 1 -1.3593 -4.3316 -0.2942 31 1 -0.2291 -4.7883 1.8232 32 1 0.9884 -5.9388 3.9344 33 1 -0.2156 -7.0655 3.2643 34 1 0.3620 -9.3753 2.8078 35 1 1.8267 -11.2749 3.3620 36 1 4.7154 -8.5741 4.9698 37 1 3.2533 -6.6761 4.4032 38 1 2.5575 -3.8464 -0.8983 39 1 2.5308 -3.8679 0.8858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016148495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:52 Heat of formation + Delta-G solvation = -51.762167 kcal Electronic energy + Delta-G solvation = -22534.704864 eV Core-core repulsion = 18970.418111 eV Total energy + Delta-G solvation = -3564.286753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89430 -41.13966 -39.85136 -38.66302 -35.43977 -33.86245 -33.23268 -32.07022 -30.98634 -29.24877 -27.93987 -26.36207 -24.01091 -23.20313 -22.06969 -21.63509 -21.15417 -18.97166 -18.64398 -18.03315 -17.43709 -17.36078 -16.75469 -16.57860 -16.32040 -16.05756 -15.62405 -15.25755 -14.81794 -14.66423 -14.51521 -14.41467 -14.17882 -13.79519 -13.38554 -13.09413 -13.03390 -12.78311 -12.77597 -12.64033 -12.29471 -12.09293 -12.03999 -11.90782 -11.82402 -11.43449 -10.87750 -10.74165 -10.03896 -10.00937 -9.52941 -8.88500 -7.77681 -5.21380 0.13630 0.31251 1.47171 1.49304 1.55915 1.72378 2.23214 2.49579 2.73475 3.30385 3.31969 3.67104 3.70770 3.77442 3.82405 3.98593 4.09244 4.11666 4.27116 4.33728 4.34719 4.64941 4.66460 4.67364 4.76841 4.93959 4.98927 5.00945 5.07290 5.10635 5.17142 5.26978 5.44460 5.55035 5.62313 5.66811 5.82400 5.94511 6.33270 6.66613 7.12336 7.34716 7.78275 8.41147 9.23079 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.003004 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.423122 B = 9319.089798 C = 9860.911658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.977 3.023 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.132 4.132 12 C 0.147 3.853 13 H 0.093 0.907 14 N -0.706 5.706 15 C 0.512 3.488 16 O -0.580 6.580 17 C -0.095 4.095 18 C -0.082 4.082 19 C -0.081 4.081 20 C -0.157 4.157 21 C 0.073 3.927 22 F -0.150 7.150 23 C -0.161 4.161 24 C -0.089 4.089 25 C 0.126 3.874 26 H 0.249 0.751 27 H 0.001 0.999 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.412 0.588 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.020 0.980 39 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -17.809 8.823 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.171 4.171 12 C 0.041 3.959 13 H 0.111 0.889 14 N -0.358 5.358 15 C 0.300 3.700 16 O -0.460 6.460 17 C -0.134 4.134 18 C -0.082 4.082 19 C -0.099 4.099 20 C -0.175 4.175 21 C 0.054 3.946 22 F -0.129 7.129 23 C -0.179 4.179 24 C -0.107 4.107 25 C 0.000 4.000 26 H 0.058 0.942 27 H 0.019 0.981 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.248 0.752 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.038 0.962 39 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.851 -18.017 8.370 19.953 hybrid contribution 0.720 1.137 0.212 1.362 sum -1.130 -16.881 8.583 18.971 Atomic orbital electron populations 1.69993 1.05854 1.25160 1.58246 1.25531 0.96688 1.00559 1.02493 0.85175 0.77227 0.79040 0.78005 1.20643 1.21528 1.20699 1.19343 0.90787 0.84028 1.43126 0.91093 1.44775 1.03043 1.00294 1.86786 1.21842 0.83510 0.94769 0.97056 1.23197 0.97519 0.95560 1.00790 1.21672 0.94983 0.95091 0.84190 0.88896 1.45928 1.39759 1.33339 1.16738 1.21130 0.80631 0.79046 0.89174 1.90705 1.33309 1.58504 1.63480 1.20730 1.02408 0.97611 0.92632 1.19608 0.95466 0.94614 0.98542 1.21160 1.00512 0.90906 0.97271 1.21352 0.93277 1.01767 1.01150 1.17981 0.90701 0.84164 1.01799 1.91465 1.73105 1.57093 1.91260 1.21294 1.02080 0.91023 1.03546 1.21121 0.93206 0.99332 0.97049 1.21770 0.95295 0.85742 0.97208 0.94151 0.98112 0.90719 0.90368 0.88020 0.75173 0.85871 0.84210 0.82837 0.83022 0.83715 0.84297 0.96180 0.97150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.11 10.08 21.65 0.22 -53.89 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.24 -13.71 10.27 84.04 0.86 -12.84 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.62 -31.58 3.39 -691.54 -2.35 -33.92 16 10 C 0.15 6.93 5.89 86.93 0.51 7.44 16 11 C -0.13 -4.34 6.65 32.06 0.21 -4.13 16 12 C 0.15 4.88 3.25 46.18 0.15 5.03 16 13 H 0.09 3.05 7.69 -2.38 -0.02 3.04 16 14 N -0.71 -19.04 5.11 -436.91 -2.23 -21.28 16 15 C 0.51 13.59 7.82 87.66 0.69 14.27 16 16 O -0.58 -20.50 15.76 -3.04 -0.05 -20.55 16 17 C -0.09 -1.59 5.83 29.10 0.17 -1.42 16 18 C -0.08 -1.63 4.37 -19.86 -0.09 -1.72 16 19 C -0.08 -1.46 9.70 22.26 0.22 -1.25 16 20 C -0.16 -3.00 10.03 22.31 0.22 -2.78 16 21 C 0.07 1.61 7.30 22.37 0.16 1.77 16 22 F -0.15 -3.51 17.27 44.97 0.78 -2.73 16 23 C -0.16 -3.41 10.03 22.31 0.22 -3.18 16 24 C -0.09 -1.87 9.70 22.26 0.22 -1.66 16 25 C 0.13 5.45 6.98 86.73 0.61 6.06 16 26 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 27 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.07 3.94 5.85 -2.39 -0.01 3.93 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.41 9.32 8.62 -92.71 -0.80 8.52 16 32 H 0.12 1.69 8.09 -2.39 -0.02 1.67 16 33 H 0.14 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 Total: -1.00 -70.87 333.11 3.28 -67.59 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.27 Total: 14.88 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.62 Total: 2.74 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.36 Total: -109.09 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.87 3.28 -67.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016148495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.827 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds