Wall clock time and date at job start Tue Mar 31 2020 06:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48497 * 109.47017 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47317 * 119.99809 * 3 2 1 6 6 H 1.48505 * 109.46985 * 239.99830 * 3 2 1 7 7 C 1.38812 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00125 * 208.44848 * 7 2 1 9 9 N 1.36932 * 119.99864 * 28.45918 * 7 2 1 10 10 C 1.47424 * 125.65125 * 19.39910 * 9 7 2 11 11 C 1.55124 * 104.72207 * 155.82185 * 10 9 7 12 12 C 1.55155 * 101.48678 * 37.30199 * 11 10 9 13 13 H 1.09003 * 110.86859 * 205.89806 * 12 11 10 14 14 N 1.46497 * 110.72453 * 82.69285 * 12 11 10 15 15 C 1.34774 * 119.99885 * 160.02249 * 14 12 11 16 16 O 1.21277 * 120.00506 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99749 * 180.02562 * 15 14 12 18 18 C 1.50700 * 109.46991 * 180.02562 * 17 15 14 19 19 C 1.38213 * 120.01640 * 99.99754 * 18 17 15 20 20 C 1.38221 * 120.02329 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.05496 * 0.02923 * 20 19 18 22 22 C 1.38174 * 120.02726 * 359.97438 * 21 20 19 23 23 C 1.38445 * 120.00587 * 279.71908 * 18 17 15 24 24 F 1.35098 * 120.02922 * 0.02562 * 23 18 17 25 25 C 1.47023 * 125.64676 * 199.71776 * 9 7 2 26 26 H 0.96999 * 119.99939 * 185.65640 * 1 2 3 27 27 H 1.09001 * 110.36928 * 274.75730 * 10 9 7 28 28 H 1.09010 * 110.36519 * 37.07542 * 10 9 7 29 29 H 1.08995 * 111.19670 * 279.19307 * 11 10 9 30 30 H 1.09007 * 110.90628 * 155.28013 * 11 10 9 31 31 H 0.96996 * 119.99802 * 340.02588 * 14 12 11 32 32 H 1.09001 * 109.46939 * 299.99966 * 17 15 14 33 33 H 1.08999 * 109.47066 * 60.00166 * 17 15 14 34 34 H 1.08002 * 119.98687 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.97067 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.98731 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.01742 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.87770 * 300.43121 * 25 9 7 39 39 H 1.09002 * 109.88311 * 61.60170 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9924 -1.2584 0.4461 9 7 1.4497 -2.3166 -0.5641 10 6 0.3427 -2.3223 -1.5377 11 6 0.4996 -3.6612 -2.3052 12 6 0.9607 -4.6149 -1.1715 13 1 1.5397 -5.4459 -1.5747 14 7 -0.1890 -5.1083 -0.4094 15 6 -0.0750 -6.2268 0.3339 16 8 0.9795 -6.8246 0.3721 17 6 -1.2579 -6.7346 1.1174 18 6 -0.8694 -7.9886 1.8574 19 6 -0.5489 -7.9278 3.2005 20 6 -0.1931 -9.0780 3.8794 21 6 -0.1566 -10.2904 3.2159 22 6 -0.4764 -10.3538 1.8732 23 6 -0.8388 -9.2030 1.1933 24 9 -1.1568 -9.2645 -0.1183 25 6 1.8477 -3.7060 -0.2947 26 1 -0.4850 -0.8360 0.0828 27 1 -0.6167 -2.2883 -1.0215 28 1 0.4358 -1.4796 -2.2229 29 1 1.2591 -3.5830 -3.0830 30 1 -0.4539 -3.9839 -2.7235 31 1 -1.0323 -4.6300 -0.4397 32 1 -1.5736 -5.9745 1.8321 33 1 -2.0786 -6.9546 0.4347 34 1 -0.5775 -6.9813 3.7199 35 1 0.0575 -9.0294 4.9288 36 1 0.1220 -11.1884 3.7473 37 1 -0.4474 -11.3009 1.3550 38 1 2.8964 -3.8483 -0.5556 39 1 1.6905 -3.9392 0.7584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016163384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:56 Heat of formation + Delta-G solvation = -58.217079 kcal Electronic energy + Delta-G solvation = -22991.906847 eV Core-core repulsion = 19427.340189 eV Total energy + Delta-G solvation = -3564.566659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.92216 -41.21791 -39.89203 -38.91728 -35.68516 -34.16549 -33.53601 -31.47517 -30.98899 -29.57814 -28.20601 -26.28320 -23.78274 -23.38314 -22.20123 -21.79680 -21.33475 -19.58919 -18.61062 -18.27274 -17.54556 -17.44814 -16.69346 -16.50367 -16.38169 -16.12303 -15.63301 -15.43070 -15.13034 -15.03315 -14.75426 -14.28390 -14.17566 -13.91576 -13.62178 -13.19041 -13.15837 -12.65185 -12.64072 -12.47960 -12.44895 -12.29676 -12.01723 -11.95851 -11.89031 -11.60857 -11.05762 -10.53693 -10.17464 -9.92360 -9.61485 -9.03663 -8.35903 -5.38533 0.17138 0.25795 1.56223 1.57443 1.64348 1.84132 2.12134 2.61664 2.69281 3.15439 3.31652 3.46255 3.49568 3.60822 3.75616 3.88452 3.95094 4.06173 4.14589 4.25317 4.38548 4.43406 4.47120 4.50932 4.54173 4.78271 4.85589 4.89579 4.95494 5.02599 5.09767 5.19917 5.23220 5.36778 5.46097 5.49247 5.65417 5.95281 6.30461 6.48617 6.88067 7.17907 7.66559 8.25231 8.95577 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.003388 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.740050 B = 8261.770538 C = 8748.805432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.070 4.070 3 Si 1.115 2.885 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.356 4.356 8 H 0.050 0.950 9 N -0.620 5.620 10 C 0.145 3.855 11 C -0.121 4.121 12 C 0.146 3.854 13 H 0.096 0.904 14 N -0.707 5.707 15 C 0.514 3.486 16 O -0.577 6.577 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.163 4.163 23 C 0.084 3.916 24 F -0.151 7.151 25 C 0.127 3.873 26 H 0.257 0.743 27 H 0.017 0.983 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.025 0.975 39 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -19.407 3.590 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.267 4.267 3 Si 0.939 3.061 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.484 4.484 8 H 0.067 0.933 9 N -0.348 5.348 10 C 0.020 3.980 11 C -0.160 4.160 12 C 0.040 3.960 13 H 0.114 0.886 14 N -0.359 5.359 15 C 0.302 3.698 16 O -0.456 6.456 17 C -0.137 4.137 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.148 4.148 21 C -0.108 4.108 22 C -0.182 4.182 23 C 0.065 3.935 24 F -0.130 7.130 25 C 0.000 4.000 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.043 0.957 39 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -5.143 -18.117 3.529 19.160 hybrid contribution -0.076 -1.180 -0.089 1.186 sum -5.220 -19.297 3.440 20.284 Atomic orbital electron populations 1.70906 1.07351 1.29443 1.50009 1.27131 0.96577 1.04223 0.98749 0.82856 0.73932 0.72056 0.77229 1.21277 1.20364 1.20729 1.19949 0.99499 0.89803 1.39158 0.93258 1.44798 1.41057 1.00933 1.48002 1.21565 0.90319 0.95895 0.90230 1.23067 1.03499 0.93261 0.96147 1.21704 0.87418 0.95414 0.91452 0.88617 1.45907 1.15044 1.26802 1.48131 1.21020 0.90120 0.79799 0.78907 1.90678 1.31428 1.58822 1.64700 1.20647 0.96458 0.96345 1.00272 1.19537 1.03938 0.92799 0.95503 1.21247 0.97147 1.00387 0.92519 1.21569 0.99462 0.91999 1.01789 1.21413 0.96988 0.99493 0.92946 1.21426 1.02655 0.97612 0.96488 1.17877 1.02262 0.95395 0.77932 1.91439 1.90501 1.97264 1.33751 1.21774 0.96694 0.85267 0.96235 0.93292 0.96492 0.95714 0.89077 0.87450 0.75266 0.85297 0.85807 0.84032 0.82615 0.81892 0.83266 0.95721 0.97815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.01 21.65 0.28 -56.12 16 2 C -0.07 -4.02 5.10 84.86 0.43 -3.59 16 3 Si 1.12 51.37 30.00 68.60 2.06 53.43 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.36 -20.77 10.00 84.03 0.84 -19.93 16 8 H 0.05 2.93 7.97 -2.91 -0.02 2.91 16 9 N -0.62 -32.18 3.26 -691.54 -2.26 -34.44 16 10 C 0.15 6.49 5.36 86.93 0.47 6.95 16 11 C -0.12 -3.95 6.65 32.06 0.21 -3.73 16 12 C 0.15 5.11 3.25 46.18 0.15 5.26 16 13 H 0.10 3.32 7.69 -2.39 -0.02 3.30 16 14 N -0.71 -21.58 5.11 -436.92 -2.23 -23.81 16 15 C 0.51 16.13 7.81 87.66 0.68 16.81 16 16 O -0.58 -22.77 15.68 -3.02 -0.05 -22.81 16 17 C -0.10 -2.24 5.56 29.10 0.16 -2.08 16 18 C -0.12 -2.85 4.43 -19.82 -0.09 -2.94 16 19 C -0.10 -1.99 9.67 22.26 0.22 -1.78 16 20 C -0.13 -2.19 10.04 22.27 0.22 -1.97 16 21 C -0.09 -1.44 10.04 22.26 0.22 -1.22 16 22 C -0.16 -3.26 10.03 22.31 0.22 -3.04 16 23 C 0.08 2.14 7.14 22.38 0.16 2.30 16 24 F -0.15 -4.19 16.66 44.97 0.75 -3.44 16 25 C 0.13 5.72 6.98 86.73 0.61 6.33 16 26 H 0.26 15.53 6.19 -92.71 -0.57 14.95 16 27 H 0.02 0.80 6.80 -2.39 -0.02 0.78 16 28 H 0.02 1.22 8.08 -2.38 -0.02 1.20 16 29 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.41 10.74 8.62 -92.71 -0.80 9.94 16 32 H 0.13 2.38 8.00 -2.39 -0.02 2.36 16 33 H 0.12 2.31 7.94 -2.39 -0.02 2.29 16 34 H 0.14 2.56 8.04 -2.91 -0.02 2.53 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.00 0.19 8.04 -2.39 -0.02 0.17 16 Total: -1.00 -76.23 333.08 3.53 -72.70 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.46 Total: 17.10 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.51 Total: -2.60 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.21 Total: -114.36 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.75 Total: -3.44 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.06 Total: 53.43 kcal Total: -76.23 3.53 -72.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016163384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.480 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds