Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47048 * 269.99259 * 3 2 1 5 5 H 1.48500 * 109.47569 * 29.99727 * 3 2 1 6 6 H 1.48506 * 109.46840 * 149.99983 * 3 2 1 7 7 C 1.38808 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00537 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64738 * 0.04743 * 9 7 2 11 11 C 1.55395 * 104.87350 * 204.09215 * 10 9 7 12 12 C 1.55161 * 101.36614 * 323.01737 * 11 10 9 13 13 H 1.08996 * 110.72110 * 153.94489 * 12 11 10 14 14 N 1.46503 * 110.71651 * 277.04227 * 12 11 10 15 15 C 1.34777 * 119.99838 * 202.55664 * 14 12 11 16 16 O 1.21281 * 120.00110 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99929 * 179.97438 * 15 14 12 18 18 C 1.50695 * 109.47146 * 180.02562 * 17 15 14 19 19 C 1.38266 * 119.98923 * 269.95721 * 18 17 15 20 20 C 1.38226 * 120.05404 * 180.02562 * 19 18 17 21 21 C 1.38217 * 120.02522 * 0.03782 * 20 19 18 22 22 C 1.38434 * 119.97400 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.02897 * 180.02562 * 22 21 20 24 24 C 1.38176 * 119.98906 * 90.00223 * 18 17 15 25 25 C 1.47024 * 125.65148 * 179.97438 * 9 7 2 26 26 H 0.97005 * 119.99619 * 0.02562 * 1 2 3 27 27 H 1.08995 * 110.36477 * 322.92493 * 10 9 7 28 28 H 1.08992 * 110.37023 * 85.14106 * 10 9 7 29 29 H 1.08998 * 111.19187 * 204.97963 * 11 10 9 30 30 H 1.08996 * 111.02089 * 80.97592 * 11 10 9 31 31 H 0.97002 * 120.00149 * 22.55806 * 14 12 11 32 32 H 1.09000 * 109.47169 * 60.00135 * 17 15 14 33 33 H 1.09001 * 109.47304 * 300.00390 * 17 15 14 34 34 H 1.08008 * 119.97418 * 0.04219 * 19 18 17 35 35 H 1.07998 * 119.98497 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.01075 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.01219 * 0.24814 * 24 18 17 38 38 H 1.08999 * 109.87699 * 59.56328 * 25 9 7 39 39 H 1.08996 * 110.01559 * 298.47434 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5331 -0.0010 11 6 -0.4043 -3.9363 0.6127 12 6 0.7783 -4.7524 0.0271 13 1 1.0246 -5.5937 0.6749 14 7 0.4671 -5.2171 -1.3270 15 6 1.1135 -6.2832 -1.8388 16 8 1.9525 -6.8583 -1.1782 17 6 0.7930 -6.7616 -3.2314 18 6 1.6470 -7.9588 -3.5603 19 6 2.8829 -7.7838 -4.1551 20 6 3.6671 -8.8811 -4.4578 21 6 3.2161 -10.1548 -4.1670 22 6 1.9788 -10.3313 -3.5717 23 9 1.5372 -11.5758 -3.2865 24 6 1.1943 -9.2312 -3.2683 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5999 -1.7587 0.6140 28 1 -0.5265 -2.4849 -1.0195 29 1 -1.3604 -4.3396 0.2790 30 1 -0.3546 -3.9026 1.7010 31 1 -0.2041 -4.7574 -1.8552 32 1 0.9955 -5.9632 -3.9454 33 1 -0.2594 -7.0401 -3.2868 34 1 3.2360 -6.7888 -4.3830 35 1 4.6324 -8.7430 -4.9220 36 1 3.8293 -11.0120 -4.4032 37 1 0.2269 -9.3680 -2.8081 38 1 2.5576 -3.8510 0.8843 39 1 2.5304 -3.8660 -0.8997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016187045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = -32.189754 kcal Electronic energy + Delta-G solvation = -22580.319619 eV Core-core repulsion = 19016.881590 eV Total energy + Delta-G solvation = -3563.438029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.01532 -40.04415 -38.82321 -37.16000 -33.83342 -33.02040 -31.75471 -30.69269 -29.28443 -28.12444 -26.84170 -24.50016 -22.92443 -22.35002 -20.54217 -20.22489 -19.79990 -17.51107 -17.13260 -16.74811 -16.57270 -16.31434 -15.77719 -15.65329 -14.93070 -14.72575 -14.24134 -13.88820 -13.80317 -13.47676 -13.40217 -13.02928 -12.66702 -12.24193 -12.16282 -11.95076 -11.74844 -11.64669 -11.22745 -11.08791 -10.90616 -10.79635 -10.42999 -10.14520 -9.91565 -9.72198 -9.59553 -9.09269 -8.79860 -8.76245 -8.63039 -6.87168 -5.69451 -3.10436 0.99616 1.06447 2.81943 3.24379 3.37829 3.43296 3.45127 3.65572 4.06497 4.42746 4.46696 4.58489 4.83163 4.98658 5.03582 5.10888 5.23406 5.34780 5.35616 5.42160 5.47690 5.68190 5.73586 5.84056 5.89548 5.93714 6.13420 6.24567 6.31728 6.33242 6.46338 6.52756 6.70194 6.73983 7.02726 7.39271 7.59176 7.75803 7.81464 8.31269 8.45312 9.18794 9.79390 10.43759 11.34750 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003027 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.188728 B = 9247.908936 C = 9743.766050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.087 0.913 14 N -0.710 5.710 15 C 0.513 3.487 16 O -0.539 6.539 17 C -0.107 4.107 18 C -0.031 4.031 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.157 4.157 22 C 0.096 3.904 23 F -0.143 7.143 24 C -0.140 4.140 25 C 0.128 3.872 26 H 0.252 0.748 27 H 0.108 0.892 28 H 0.011 0.989 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.401 0.599 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.030 0.970 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -16.828 -8.959 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.026 3.974 13 H 0.105 0.895 14 N -0.361 5.361 15 C 0.299 3.701 16 O -0.415 6.415 17 C -0.147 4.147 18 C -0.032 4.032 19 C -0.132 4.132 20 C -0.108 4.108 21 C -0.176 4.176 22 C 0.077 3.923 23 F -0.121 7.121 24 C -0.159 4.159 25 C 0.001 3.999 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.235 0.765 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.048 0.952 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.417 -17.053 -8.443 19.033 hybrid contribution 0.098 0.875 -0.263 0.919 sum 0.515 -16.178 -8.705 18.379 Atomic orbital electron populations 1.69778 1.04863 1.24767 1.57883 1.24771 0.95752 0.97694 1.02498 0.86063 0.78574 0.83267 0.77550 1.21670 1.21641 1.20686 1.19094 0.90554 0.82437 1.42792 0.90523 1.44512 1.01819 0.99769 1.86887 1.22031 0.84895 0.92392 0.98002 1.23420 0.95821 0.99141 1.00900 1.21993 0.96824 0.96325 0.82253 0.89452 1.45996 1.41941 1.30821 1.17361 1.20329 0.81532 0.80250 0.88011 1.90718 1.32744 1.56793 1.61295 1.20732 1.01069 0.97000 0.95872 1.19132 0.94774 0.92918 0.96335 1.21118 0.93643 0.99482 0.98989 1.20966 0.99672 0.91420 0.98719 1.21114 0.95355 0.98930 1.02225 1.17628 0.94368 0.79401 1.00909 1.91488 1.89564 1.39434 1.91648 1.20949 1.01090 0.91325 1.02495 1.21675 0.93883 0.85891 0.98447 0.93749 0.87430 0.97126 0.91698 0.90640 0.76483 0.87372 0.87734 0.85266 0.84970 0.84956 0.84934 0.95194 0.95703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.16 3.40 -169.77 -0.58 -15.73 16 10 C 0.15 3.47 5.88 -2.26 -0.01 3.45 16 11 C -0.15 -2.71 6.69 -24.32 -0.16 -2.87 16 12 C 0.13 2.30 3.28 -66.09 -0.22 2.09 16 13 H 0.09 1.54 7.62 -51.93 -0.40 1.15 16 14 N -0.71 -10.55 5.10 -52.03 -0.27 -10.82 16 15 C 0.51 7.50 7.82 -10.99 -0.09 7.41 16 16 O -0.54 -9.97 15.72 5.56 0.09 -9.88 16 17 C -0.11 -1.10 5.83 -29.04 -0.17 -1.27 16 18 C -0.03 -0.35 4.37 -104.64 -0.46 -0.81 16 19 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 20 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 21 C -0.16 -1.60 10.03 -39.52 -0.40 -2.00 16 22 C 0.10 1.12 7.30 -39.42 -0.29 0.83 16 23 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 24 C -0.14 -1.61 9.68 -39.51 -0.38 -1.99 16 25 C 0.13 2.75 6.98 -3.06 -0.02 2.73 16 26 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.11 2.81 5.87 -51.93 -0.30 2.51 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.40 5.22 8.63 -40.82 -0.35 4.87 16 32 H 0.11 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -32.33 333.09 -8.62 -40.95 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.24 Total: 2.99 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.23 Total: -1.98 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.28 Total: -52.22 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.33 -8.62 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016187045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.763 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds