Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47048 * 269.99259 * 3 2 1 5 5 H 1.48500 * 109.47569 * 29.99727 * 3 2 1 6 6 H 1.48506 * 109.46840 * 149.99983 * 3 2 1 7 7 C 1.38808 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00537 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64738 * 0.04743 * 9 7 2 11 11 C 1.55395 * 104.87350 * 204.09215 * 10 9 7 12 12 C 1.55161 * 101.36614 * 323.01737 * 11 10 9 13 13 H 1.08996 * 110.72110 * 153.94489 * 12 11 10 14 14 N 1.46503 * 110.71651 * 277.04227 * 12 11 10 15 15 C 1.34777 * 119.99838 * 202.55664 * 14 12 11 16 16 O 1.21281 * 120.00110 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99929 * 179.97438 * 15 14 12 18 18 C 1.50695 * 109.47146 * 180.02562 * 17 15 14 19 19 C 1.38266 * 119.98923 * 269.95721 * 18 17 15 20 20 C 1.38226 * 120.05404 * 180.02562 * 19 18 17 21 21 C 1.38217 * 120.02522 * 0.03782 * 20 19 18 22 22 C 1.38434 * 119.97400 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.02897 * 180.02562 * 22 21 20 24 24 C 1.38176 * 119.98906 * 90.00223 * 18 17 15 25 25 C 1.47024 * 125.65148 * 179.97438 * 9 7 2 26 26 H 0.97005 * 119.99619 * 0.02562 * 1 2 3 27 27 H 1.08995 * 110.36477 * 322.92493 * 10 9 7 28 28 H 1.08992 * 110.37023 * 85.14106 * 10 9 7 29 29 H 1.08998 * 111.19187 * 204.97963 * 11 10 9 30 30 H 1.08996 * 111.02089 * 80.97592 * 11 10 9 31 31 H 0.97002 * 120.00149 * 22.55806 * 14 12 11 32 32 H 1.09000 * 109.47169 * 60.00135 * 17 15 14 33 33 H 1.09001 * 109.47304 * 300.00390 * 17 15 14 34 34 H 1.08008 * 119.97418 * 0.04219 * 19 18 17 35 35 H 1.07998 * 119.98497 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.01075 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.01219 * 0.24814 * 24 18 17 38 38 H 1.08999 * 109.87699 * 59.56328 * 25 9 7 39 39 H 1.08996 * 110.01559 * 298.47434 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5331 -0.0010 11 6 -0.4043 -3.9363 0.6127 12 6 0.7783 -4.7524 0.0271 13 1 1.0246 -5.5937 0.6749 14 7 0.4671 -5.2171 -1.3270 15 6 1.1135 -6.2832 -1.8388 16 8 1.9525 -6.8583 -1.1782 17 6 0.7930 -6.7616 -3.2314 18 6 1.6470 -7.9588 -3.5603 19 6 2.8829 -7.7838 -4.1551 20 6 3.6671 -8.8811 -4.4578 21 6 3.2161 -10.1548 -4.1670 22 6 1.9788 -10.3313 -3.5717 23 9 1.5372 -11.5758 -3.2865 24 6 1.1943 -9.2312 -3.2683 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5999 -1.7587 0.6140 28 1 -0.5265 -2.4849 -1.0195 29 1 -1.3604 -4.3396 0.2790 30 1 -0.3546 -3.9026 1.7010 31 1 -0.2041 -4.7574 -1.8552 32 1 0.9955 -5.9632 -3.9454 33 1 -0.2594 -7.0401 -3.2868 34 1 3.2360 -6.7888 -4.3830 35 1 4.6324 -8.7430 -4.9220 36 1 3.8293 -11.0120 -4.4032 37 1 0.2269 -9.3680 -2.8081 38 1 2.5576 -3.8510 0.8843 39 1 2.5304 -3.8660 -0.8997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016187045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = -51.845983 kcal Electronic energy + Delta-G solvation = -22581.171977 eV Core-core repulsion = 19016.881590 eV Total energy + Delta-G solvation = -3564.290387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89458 -41.16056 -39.84753 -38.67919 -35.45490 -34.00338 -33.39391 -31.49752 -31.00732 -29.39409 -28.21597 -26.39714 -23.72929 -23.32740 -22.07740 -21.68345 -21.19657 -18.98121 -18.31917 -18.06844 -17.44159 -17.15839 -17.08222 -16.66965 -16.56843 -16.08748 -15.63208 -15.35697 -14.89586 -14.66121 -14.45562 -14.20591 -14.08085 -13.78179 -13.39400 -13.09079 -13.04987 -12.88257 -12.79212 -12.55856 -12.31409 -12.12337 -12.01500 -11.97865 -11.82863 -11.43272 -10.92713 -10.74778 -10.04129 -9.90765 -9.62608 -8.88727 -7.77954 -5.21530 0.17913 0.26499 1.47575 1.48439 1.57456 1.68706 2.21285 2.49560 2.72808 3.24951 3.32247 3.62069 3.69271 3.80371 3.84943 4.03924 4.08446 4.12139 4.27023 4.32165 4.35931 4.51183 4.63047 4.66427 4.75077 4.90860 4.94069 5.04823 5.06264 5.10829 5.15823 5.36013 5.44797 5.52199 5.60624 5.65264 5.81889 5.95521 6.32496 6.63203 7.12049 7.30979 7.77889 8.40905 9.23294 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003027 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.188728 B = 9247.908936 C = 9743.766050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.133 4.133 12 C 0.145 3.855 13 H 0.092 0.908 14 N -0.706 5.706 15 C 0.513 3.487 16 O -0.580 6.580 17 C -0.097 4.097 18 C -0.046 4.046 19 C -0.126 4.126 20 C -0.091 4.091 21 C -0.159 4.159 22 C 0.074 3.926 23 F -0.150 7.150 24 C -0.151 4.151 25 C 0.127 3.873 26 H 0.248 0.752 27 H 0.074 0.926 28 H 0.001 0.999 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.021 0.979 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -17.397 -9.900 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.172 4.172 12 C 0.040 3.960 13 H 0.110 0.890 14 N -0.357 5.357 15 C 0.301 3.699 16 O -0.459 6.459 17 C -0.136 4.136 18 C -0.046 4.046 19 C -0.144 4.144 20 C -0.109 4.109 21 C -0.178 4.178 22 C 0.055 3.945 23 F -0.129 7.129 24 C -0.169 4.169 25 C 0.000 4.000 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.019 0.981 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.039 0.961 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.344 -17.640 -9.404 19.993 hybrid contribution 0.171 1.029 0.015 1.043 sum 0.515 -16.611 -9.389 19.087 Atomic orbital electron populations 1.70012 1.05887 1.25082 1.58326 1.25539 0.96688 1.00598 1.02524 0.85092 0.77563 0.79275 0.77458 1.21289 1.21706 1.19959 1.19381 0.90815 0.83939 1.42971 0.90960 1.44768 1.02980 1.00326 1.86794 1.21856 0.83547 0.94527 0.97137 1.23251 0.97481 0.95659 1.00789 1.21682 0.95077 0.95250 0.84035 0.88962 1.45918 1.42274 1.31041 1.16474 1.21059 0.80316 0.79288 0.89220 1.90703 1.34515 1.57976 1.62750 1.20759 1.02712 0.97151 0.93016 1.19311 0.95351 0.93142 0.96833 1.21417 0.93710 1.00396 0.98910 1.21308 1.00559 0.90872 0.98136 1.21413 0.94993 0.99985 1.01412 1.17912 0.95301 0.79271 1.02001 1.91464 1.89741 1.39848 1.91852 1.21133 1.01625 0.91522 1.02654 1.21764 0.95210 0.85645 0.97358 0.94186 0.90819 0.98082 0.88149 0.90387 0.75170 0.85269 0.84665 0.84335 0.82365 0.83038 0.84167 0.96076 0.96884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.17 10.09 21.65 0.22 -53.95 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 3 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.55 10.27 84.03 0.86 -12.69 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.62 -31.52 3.40 -691.02 -2.35 -33.86 16 10 C 0.15 7.02 5.88 87.03 0.51 7.53 16 11 C -0.13 -4.46 6.69 32.16 0.22 -4.24 16 12 C 0.15 4.92 3.28 46.18 0.15 5.07 16 13 H 0.09 3.11 7.62 -2.39 -0.02 3.09 16 14 N -0.71 -19.55 5.10 -436.91 -2.23 -21.78 16 15 C 0.51 14.05 7.82 87.66 0.69 14.74 16 16 O -0.58 -20.89 15.72 -3.03 -0.05 -20.94 16 17 C -0.10 -1.74 5.83 29.10 0.17 -1.57 16 18 C -0.05 -0.96 4.37 -19.87 -0.09 -1.05 16 19 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 20 C -0.09 -1.58 10.04 22.26 0.22 -1.36 16 21 C -0.16 -3.00 10.03 22.31 0.22 -2.77 16 22 C 0.07 1.67 7.30 22.38 0.16 1.83 16 23 F -0.15 -3.57 17.27 44.97 0.78 -2.80 16 24 C -0.15 -3.29 9.68 22.31 0.22 -3.07 16 25 C 0.13 5.45 6.98 86.73 0.61 6.06 16 26 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 27 H 0.07 3.91 5.87 -2.39 -0.01 3.89 16 28 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.41 9.69 8.63 -92.71 -0.80 8.89 16 32 H 0.13 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.14 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 Total: -1.00 -70.66 333.09 3.29 -67.37 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.27 Total: 15.61 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.62 Total: 3.28 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.36 Total: -109.60 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.66 3.29 -67.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016187045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.526 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds