Wall clock time and date at job start Tue Mar 31 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48503 * 109.47430 * 274.14540 * 3 2 1 5 5 H 1.48505 * 109.47110 * 34.14675 * 3 2 1 6 6 H 1.48501 * 109.46900 * 154.14249 * 3 2 1 7 7 C 1.38811 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99785 * 170.42375 * 7 2 1 9 9 N 1.36934 * 120.00298 * 350.41497 * 7 2 1 10 10 C 1.47426 * 125.64693 * 349.98760 * 9 7 2 11 11 C 1.55117 * 104.94313 * 203.96897 * 10 9 7 12 12 C 1.55153 * 101.48578 * 323.22036 * 11 10 9 13 13 H 1.09003 * 110.72452 * 276.83318 * 12 11 10 14 14 N 1.46500 * 110.72243 * 153.73672 * 12 11 10 15 15 C 1.34774 * 120.00245 * 157.44049 * 14 12 11 16 16 O 1.21290 * 120.00022 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00389 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.47091 * 180.02562 * 17 15 14 19 19 C 1.38265 * 119.98496 * 269.72284 * 18 17 15 20 20 C 1.38233 * 120.04922 * 179.77114 * 19 18 17 21 21 C 1.38215 * 120.02103 * 0.51019 * 20 19 18 22 22 C 1.38435 * 119.98072 * 359.74429 * 21 20 19 23 23 F 1.35093 * 120.02850 * 179.97438 * 22 21 20 24 24 C 1.38177 * 119.98830 * 90.00594 * 18 17 15 25 25 C 1.47024 * 125.65022 * 169.94487 * 9 7 2 26 26 H 0.96998 * 120.00405 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.36578 * 322.92933 * 10 9 7 28 28 H 1.08995 * 110.36980 * 85.24902 * 10 9 7 29 29 H 1.09004 * 111.16192 * 205.13085 * 11 10 9 30 30 H 1.08999 * 110.93967 * 81.21733 * 11 10 9 31 31 H 0.97004 * 119.99725 * 337.71760 * 14 12 11 32 32 H 1.09000 * 109.46628 * 300.00309 * 17 15 14 33 33 H 1.09001 * 109.46731 * 59.99801 * 17 15 14 34 34 H 1.07997 * 119.97589 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.98664 * 180.25290 * 20 19 18 36 36 H 1.08008 * 120.01064 * 179.76643 * 21 20 19 37 37 H 1.08002 * 120.01236 * 359.95011 * 24 18 17 38 38 H 1.08997 * 109.87898 * 59.55955 * 25 9 7 39 39 H 1.08997 * 109.87900 * 298.39258 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4099 2.0971 -1.3964 5 1 1.4940 2.6258 0.7859 6 1 3.5887 1.4165 0.6106 7 6 2.0102 -1.2021 -0.0005 8 1 3.0790 -1.2085 -0.1561 9 7 1.3400 -2.3799 0.1964 10 6 -0.0651 -2.5077 0.6238 11 6 -0.1576 -3.9103 1.2798 12 6 0.7934 -4.7377 0.3753 13 1 0.2749 -5.0765 -0.5217 14 7 1.3490 -5.8759 1.1115 15 6 1.8112 -6.9506 0.4422 16 8 1.7676 -6.9752 -0.7696 17 6 2.3833 -8.1213 1.1995 18 6 2.8257 -9.1821 0.2249 19 6 1.9429 -10.1711 -0.1678 20 6 2.3459 -11.1421 -1.0653 21 6 3.6353 -11.1314 -1.5630 22 6 4.5217 -10.1448 -1.1665 23 9 5.7823 -10.1337 -1.6520 24 6 4.1152 -9.1695 -0.2713 25 6 1.9022 -3.7263 0.0157 26 1 -0.4850 0.8400 0.0004 27 1 -0.3133 -1.7320 1.3483 28 1 -0.7305 -2.4502 -0.2376 29 1 -1.1751 -4.2990 1.2357 30 1 0.2048 -3.8844 2.3074 31 1 1.3805 -5.8578 2.0808 32 1 3.2385 -7.7899 1.7885 33 1 1.6221 -8.5316 1.8631 34 1 0.9365 -10.1826 0.2238 35 1 1.6542 -11.9118 -1.3746 36 1 3.9511 -11.8924 -2.2614 37 1 4.8058 -8.3990 0.0385 38 1 2.7573 -3.8628 0.6777 39 1 2.2077 -3.8643 -1.0214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016187047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:49 Heat of formation + Delta-G solvation = -55.610375 kcal Electronic energy + Delta-G solvation = -22414.036253 eV Core-core repulsion = 18849.582630 eV Total energy + Delta-G solvation = -3564.453623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.90533 -41.13603 -39.81620 -38.72674 -35.57999 -34.03659 -33.51557 -31.49128 -31.04175 -29.44692 -28.14159 -26.32998 -23.71889 -23.25509 -22.31534 -21.72480 -21.18450 -19.01937 -18.31009 -18.02097 -17.40821 -17.24645 -17.08227 -16.70084 -16.57701 -16.20287 -15.73197 -15.40567 -14.89547 -14.61730 -14.30924 -14.25452 -14.07738 -13.80903 -13.55331 -13.08114 -13.03634 -12.85685 -12.74113 -12.53635 -12.46880 -12.21504 -12.02661 -11.97531 -11.85260 -11.54741 -10.94041 -10.71926 -10.07383 -9.89988 -9.61490 -8.90614 -7.91382 -5.26963 0.18942 0.27091 1.45392 1.46630 1.56615 1.68965 2.16409 2.48532 2.73043 3.26549 3.28253 3.62567 3.67992 3.75880 3.84867 4.02835 4.06168 4.14145 4.25890 4.29519 4.37335 4.53451 4.57852 4.65252 4.74573 4.90658 4.94009 5.02555 5.07806 5.12647 5.17521 5.37355 5.40773 5.52167 5.55103 5.59370 5.69514 5.96955 6.17514 6.64704 7.05462 7.34275 7.71722 8.37332 9.20310 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.002968 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.787185 B = 9432.531133 C =10137.028675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.623 5.623 10 C 0.175 3.825 11 C -0.125 4.125 12 C 0.150 3.850 13 H 0.075 0.925 14 N -0.703 5.703 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.093 4.093 18 C -0.048 4.048 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.161 4.161 22 C 0.069 3.931 23 F -0.154 7.154 24 C -0.157 4.157 25 C 0.127 3.873 26 H 0.251 0.749 27 H 0.045 0.955 28 H -0.004 1.004 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.419 0.581 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.033 0.967 39 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -23.914 6.717 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.350 5.350 10 C 0.050 3.950 11 C -0.164 4.164 12 C 0.044 3.956 13 H 0.093 0.907 14 N -0.356 5.356 15 C 0.298 3.702 16 O -0.462 6.462 17 C -0.133 4.133 18 C -0.049 4.049 19 C -0.138 4.138 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.050 3.950 23 F -0.132 7.132 24 C -0.176 4.176 25 C 0.001 3.999 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.014 0.986 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.257 0.743 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.150 0.850 38 H 0.051 0.949 39 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.437 -23.730 5.844 24.560 hybrid contribution 0.829 1.439 -0.373 1.702 sum 3.266 -22.291 5.471 23.184 Atomic orbital electron populations 1.70133 1.06297 1.25733 1.57210 1.25664 0.96578 1.01063 1.02016 0.85069 0.77882 0.79012 0.77344 1.21547 1.21344 1.19374 1.19374 0.91549 0.84179 1.42884 0.90821 1.44742 1.10340 1.00543 1.79344 1.21284 0.84488 0.93744 0.95529 1.23146 0.99639 0.94560 0.99073 1.21568 0.93258 0.85085 0.95702 0.90655 1.45835 1.62604 1.16067 1.11047 1.21238 0.76919 0.84123 0.87940 1.90743 1.57117 1.81953 1.16430 1.20774 1.04802 0.90614 0.97063 1.19379 0.92478 0.95676 0.97328 1.21460 1.00263 0.94185 0.97880 1.21363 0.94990 0.99072 0.95427 1.21430 0.94520 0.99249 1.02805 1.17988 0.80035 0.98706 0.98232 1.91456 1.38461 1.96467 1.86860 1.21171 0.98210 0.99085 0.99147 1.21712 0.96043 0.85570 0.96617 0.94018 0.93692 0.98574 0.88551 0.89172 0.74288 0.85247 0.83512 0.83088 0.82008 0.83257 0.84985 0.94909 0.98392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.78 10.68 21.65 0.23 -56.55 16 2 C -0.06 -3.42 5.40 84.86 0.46 -2.96 16 3 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.25 -14.49 10.24 84.03 0.86 -13.63 16 8 H 0.07 4.15 7.85 -2.91 -0.02 4.13 16 9 N -0.62 -32.86 3.40 -691.58 -2.35 -35.21 16 10 C 0.17 8.41 5.42 86.93 0.47 8.88 16 11 C -0.13 -4.11 6.72 32.06 0.22 -3.89 16 12 C 0.15 5.13 3.27 46.18 0.15 5.28 16 13 H 0.08 2.87 7.62 -2.39 -0.02 2.86 16 14 N -0.70 -16.81 5.12 -436.91 -2.24 -19.05 16 15 C 0.51 12.79 7.82 87.66 0.69 13.47 16 16 O -0.58 -21.07 15.72 -3.06 -0.05 -21.12 16 17 C -0.09 -1.35 5.83 29.10 0.17 -1.18 16 18 C -0.05 -0.92 4.37 -19.87 -0.09 -1.01 16 19 C -0.12 -1.97 9.70 22.27 0.22 -1.75 16 20 C -0.09 -1.39 10.04 22.26 0.22 -1.17 16 21 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 22 C 0.07 1.62 7.30 22.37 0.16 1.78 16 23 F -0.15 -3.93 17.27 44.97 0.78 -3.16 16 24 C -0.16 -3.55 9.68 22.31 0.22 -3.33 16 25 C 0.13 5.61 7.00 86.73 0.61 6.22 16 26 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.04 2.39 6.94 -2.39 -0.02 2.37 16 28 H 0.00 -0.20 8.07 -2.39 -0.02 -0.22 16 29 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 31 H 0.42 6.69 8.54 -92.71 -0.79 5.89 16 32 H 0.13 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.15 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -77.63 333.93 3.25 -74.38 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.27 Total: 8.74 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.57 Total: 3.94 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.35 Total: -110.81 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.05 Total: -21.12 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -77.63 3.25 -74.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016187047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.765 kcal (2) G-P(sol) polarization free energy of solvation -77.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds