Wall clock time and date at job start Tue Mar 31 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55156 * 111.00784 * 86.45040 * 10 9 7 13 13 C 1.54325 * 102.94629 * 153.57711 * 12 10 9 14 14 N 1.47018 * 107.26791 * 337.80770 * 13 12 10 15 15 C 1.34783 * 125.65051 * 178.98919 * 14 13 12 16 16 O 1.21276 * 120.00167 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99574 * 359.97072 * 15 14 13 18 18 C 1.50703 * 109.47188 * 180.02562 * 17 15 14 19 19 C 1.38265 * 119.98906 * 269.72542 * 18 17 15 20 20 C 1.38221 * 120.04949 * 179.76431 * 19 18 17 21 21 C 1.38218 * 120.02806 * 0.51222 * 20 19 18 22 22 C 1.38439 * 119.97328 * 359.74261 * 21 20 19 23 23 F 1.35097 * 120.02624 * 179.97438 * 22 21 20 24 24 C 1.38175 * 119.98479 * 89.99881 * 18 17 15 25 25 C 1.47428 * 108.70653 * 358.94229 * 14 13 12 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09006 * 110.71784 * 271.94057 * 12 10 9 29 29 H 1.08998 * 110.71789 * 35.21069 * 12 10 9 30 30 H 1.09001 * 109.88082 * 97.22397 * 13 12 10 31 31 H 1.09001 * 109.88134 * 218.39348 * 13 12 10 32 32 H 1.08998 * 109.47339 * 300.00559 * 17 15 14 33 33 H 1.08998 * 109.46968 * 60.00189 * 17 15 14 34 34 H 1.07995 * 119.97124 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.98531 * 180.25435 * 20 19 18 36 36 H 1.07995 * 120.01667 * 179.72570 * 21 20 19 37 37 H 1.08005 * 120.01125 * 0.02562 * 24 18 17 38 38 H 1.09009 * 110.36455 * 265.29447 * 25 14 13 39 39 H 1.09000 * 110.36736 * 142.97060 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 2.4126 -4.0943 1.4441 13 6 2.5162 -5.6295 1.3252 14 7 1.7446 -6.0284 0.1391 15 6 1.6037 -7.2880 -0.3194 16 8 0.9403 -7.5014 -1.3119 17 6 2.2708 -8.4310 0.4013 18 6 1.9592 -9.7231 -0.3091 19 6 0.8444 -10.4579 0.0502 20 6 0.5548 -11.6406 -0.6038 21 6 1.3852 -12.0955 -1.6108 22 6 2.5045 -11.3633 -1.9678 23 9 3.3172 -11.8072 -2.9515 24 6 2.7908 -10.1757 -1.3155 25 6 1.1493 -4.8226 -0.4652 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 3.3661 -3.6662 1.7536 29 1 1.6196 -3.8139 2.1374 30 1 3.5592 -5.9224 1.2046 31 1 2.0975 -6.0993 2.2151 32 1 3.3493 -8.2738 0.4123 33 1 1.9004 -8.4805 1.4252 34 1 0.1973 -10.1053 0.8396 35 1 -0.3185 -12.2117 -0.3251 36 1 1.1611 -13.0219 -2.1187 37 1 3.6641 -9.6040 -1.5927 38 1 0.1320 -4.6784 -0.1011 39 1 1.1566 -4.9000 -1.5525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019738807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:34 Heat of formation + Delta-G solvation = -41.661302 kcal Electronic energy + Delta-G solvation = -22288.268652 eV Core-core repulsion = 18724.419906 eV Total energy + Delta-G solvation = -3563.848746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.07994 -40.24769 -39.03236 -37.33732 -34.47764 -33.13728 -31.59853 -30.78455 -29.55959 -28.65028 -26.95866 -23.66797 -23.07760 -22.94679 -21.93218 -20.32269 -19.22751 -17.55792 -17.44949 -17.14342 -16.69813 -16.40383 -15.96137 -15.76714 -15.32781 -14.70616 -14.46057 -14.21736 -13.72842 -13.53790 -13.42638 -13.37160 -12.83689 -12.70173 -12.42372 -12.23827 -12.08774 -11.87995 -11.72641 -11.32140 -11.08849 -10.74029 -10.71029 -10.32296 -10.06767 -9.90221 -9.28815 -9.18751 -9.00639 -8.89002 -8.54245 -7.16659 -6.19176 -3.21456 0.89782 0.97436 2.63695 2.95923 3.41984 3.47557 3.51975 3.66229 3.97809 4.32522 4.47719 4.57592 4.59916 4.75287 4.90945 4.91114 4.97492 5.12093 5.17882 5.23816 5.26216 5.42173 5.51688 5.57559 5.65228 5.79594 5.84397 5.85724 5.92574 6.03274 6.09547 6.20258 6.24146 6.41013 6.48159 6.64720 6.77270 7.59271 7.71874 8.18394 8.66115 9.10149 9.96726 10.09923 11.28797 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.037678 B = 0.002632 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.967324 B =10636.057613 C =10740.750540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.084 2.916 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.100 3.900 14 N -0.614 5.614 15 C 0.527 3.473 16 O -0.537 6.537 17 C -0.100 4.100 18 C -0.034 4.034 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.098 3.902 23 F -0.141 7.141 24 C -0.139 4.139 25 C 0.099 3.901 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -23.010 3.423 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.065 3.935 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.023 4.023 14 N -0.348 5.348 15 C 0.315 3.685 16 O -0.413 6.413 17 C -0.140 4.140 18 C -0.034 4.034 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.175 4.175 22 C 0.079 3.921 23 F -0.120 7.120 24 C -0.158 4.158 25 C -0.024 4.024 26 H 0.068 0.932 27 H 0.203 0.797 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.125 -21.506 2.797 22.284 hybrid contribution 0.100 -1.736 -0.044 1.739 sum 5.225 -23.242 2.752 23.980 Atomic orbital electron populations 1.70859 1.06092 1.28582 1.52986 1.25826 0.97019 1.01104 1.00014 0.83186 0.73908 0.75210 0.76285 1.22215 1.22069 1.21310 1.20034 0.92075 0.85411 1.49173 0.91500 1.42267 1.04856 1.00345 1.89371 1.21229 0.94140 0.85145 0.92989 0.91795 1.23394 1.02924 0.91317 1.01908 1.22136 0.95308 0.97605 0.87293 1.48464 1.51135 1.06120 1.29107 1.20032 0.81401 0.82347 0.84748 1.90737 1.40913 1.83628 1.26068 1.20678 1.02856 0.90259 1.00158 1.19137 0.94530 0.94500 0.95275 1.21073 0.96563 0.94979 1.00744 1.20959 0.98812 0.96086 0.94902 1.21132 0.94965 1.01305 1.00125 1.17633 0.90771 0.94789 0.88905 1.91496 1.71725 1.89134 1.59639 1.20972 1.01871 0.95683 0.97271 1.22528 0.97417 0.83676 0.98804 0.93250 0.79691 0.90572 0.90661 0.91690 0.91849 0.87671 0.87549 0.85399 0.84931 0.84859 0.84857 0.91541 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.46 13.70 55.49 0.76 -27.70 16 2 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 3 Si 1.08 25.28 29.92 -169.99 -5.09 20.19 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.34 -9.08 9.98 -15.06 -0.15 -9.23 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.73 -17.41 5.28 -51.36 -0.27 -17.69 16 10 C 0.18 3.35 3.69 -65.79 -0.24 3.10 16 11 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 12 C -0.15 -2.39 6.65 -24.90 -0.17 -2.56 16 13 C 0.10 1.19 6.49 -3.07 -0.02 1.17 16 14 N -0.61 -8.87 3.33 -170.52 -0.57 -9.44 16 15 C 0.53 7.55 7.84 -10.98 -0.09 7.46 16 16 O -0.54 -9.88 16.29 5.56 0.09 -9.78 16 17 C -0.10 -0.97 5.02 -29.04 -0.15 -1.11 16 18 C -0.03 -0.36 4.37 -104.63 -0.46 -0.82 16 19 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 20 C -0.09 -0.79 10.04 -39.59 -0.40 -1.18 16 21 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 22 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 23 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 24 C -0.14 -1.56 9.68 -39.51 -0.38 -1.94 16 25 C 0.10 1.71 6.53 -2.53 -0.02 1.69 16 26 H 0.26 7.62 6.77 -40.82 -0.28 7.34 16 27 H 0.37 9.18 6.54 -40.82 -0.27 8.91 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.07 1.18 8.00 -51.92 -0.42 0.77 16 39 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.14 336.19 -8.42 -41.57 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.23 Total: 6.70 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.23 Total: -7.27 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.08 Total: -54.83 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.14 -8.42 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019738807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.095 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds