Wall clock time and date at job start Tue Mar 31 2020 07:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47374 * 270.00024 * 3 2 1 5 5 H 1.48503 * 109.47109 * 29.99936 * 3 2 1 6 6 H 1.48501 * 109.47274 * 149.99607 * 3 2 1 7 7 C 1.38814 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99711 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00413 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00479 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90477 * 336.25133 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50306 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.08997 * 113.61646 * 220.02209 * 13 12 10 15 15 N 1.46499 * 113.61746 * 89.11614 * 13 12 10 16 16 C 1.34771 * 119.99903 * 107.50534 * 15 13 12 17 17 O 1.21554 * 120.00213 * 0.02562 * 16 15 13 18 18 C 1.47848 * 119.99690 * 180.02562 * 16 15 13 19 19 C 1.39573 * 120.14787 * 359.72326 * 18 16 15 20 20 C 1.37957 * 119.85398 * 179.74479 * 19 18 16 21 21 C 1.38358 * 120.14405 * 0.53268 * 20 19 18 22 22 C 1.50702 * 119.85265 * 179.71839 * 21 20 19 23 23 F 1.39900 * 109.47326 * 270.02114 * 22 21 20 24 24 C 1.38355 * 120.29175 * 359.73869 * 21 20 19 25 25 C 1.37954 * 120.14853 * 359.97438 * 24 21 20 26 26 C 1.53784 * 113.61569 * 205.00086 * 10 9 7 27 27 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 28 28 H 0.97009 * 119.99987 * 0.02562 * 9 7 2 29 29 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 30 30 H 1.08999 * 113.69146 * 254.54138 * 12 10 9 31 31 H 0.97001 * 119.99349 * 287.50724 * 15 13 12 32 32 H 1.08005 * 120.06973 * 0.02562 * 19 18 16 33 33 H 1.07999 * 119.92579 * 180.27278 * 20 19 18 34 34 H 1.09010 * 109.47152 * 30.02385 * 22 21 20 35 35 H 1.08999 * 109.46916 * 150.02100 * 22 21 20 36 36 H 1.08006 * 119.92342 * 179.97438 * 24 21 20 37 37 H 1.08002 * 120.07708 * 180.02562 * 25 24 21 38 38 H 1.09004 * 113.61451 * 105.47149 * 26 10 9 39 39 H 1.08994 * 113.61477 * 334.56451 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5282 -3.2979 0.4050 12 6 4.7877 -2.7922 -1.3425 13 6 5.9848 -3.3093 -0.5274 14 1 6.9516 -3.0421 -0.9540 15 7 5.8881 -4.7289 -0.1787 16 6 6.6788 -5.6295 -0.7951 17 8 7.4725 -5.2639 -1.6401 18 6 6.5808 -7.0622 -0.4436 19 6 5.6746 -7.4847 0.5303 20 6 5.5845 -8.8237 0.8499 21 6 6.3977 -9.7457 0.2152 22 6 6.2982 -11.2061 0.5739 23 9 7.1843 -11.4912 1.6182 24 6 7.3020 -9.3329 -0.7471 25 6 7.3981 -7.9977 -1.0802 26 6 5.5259 -2.3660 0.5972 27 1 -0.4849 0.8400 0.0004 28 1 3.8647 -0.3621 0.0014 29 1 5.0148 -1.9088 -1.9393 30 1 4.2797 -3.5696 -1.9133 31 1 5.2550 -5.0205 0.4958 32 1 5.0422 -6.7653 1.0294 33 1 4.8806 -9.1524 1.6001 34 1 5.2799 -11.4343 0.8888 35 1 6.5541 -11.8119 -0.2953 36 1 7.9342 -10.0577 -1.2385 37 1 8.1042 -7.6768 -1.8319 38 1 5.6130 -2.7996 1.5934 39 1 5.9547 -1.3662 0.5306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021109041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:10 Heat of formation + Delta-G solvation = -26.269913 kcal Electronic energy + Delta-G solvation = -21986.605369 eV Core-core repulsion = 18423.424044 eV Total energy + Delta-G solvation = -3563.181326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.04542 -40.54013 -39.16525 -37.85058 -34.28154 -33.17074 -32.26452 -31.32483 -30.43556 -27.36139 -25.28613 -24.74896 -23.10942 -23.01259 -21.86888 -20.71885 -19.27065 -18.23131 -17.50060 -16.80126 -16.51268 -16.26561 -15.94031 -15.25739 -15.14116 -14.88534 -14.60731 -14.49723 -14.16153 -13.88236 -13.45172 -13.09367 -12.92830 -12.67158 -12.25738 -12.20739 -12.05282 -11.75969 -11.52126 -11.32708 -11.03888 -10.92246 -10.46090 -10.24677 -10.03280 -9.93822 -9.61671 -9.40485 -9.36054 -8.99225 -8.87867 -7.32998 -5.83375 -3.19472 0.40716 0.97623 2.61044 3.04158 3.33601 3.36638 3.41979 3.52646 3.97441 4.19704 4.43097 4.50410 4.53606 4.57328 4.67552 4.86758 4.94906 5.04801 5.13856 5.17034 5.21973 5.37015 5.37131 5.57667 5.65301 5.71259 5.81440 5.90464 5.98973 6.00526 6.07437 6.13821 6.35198 6.44139 6.47697 6.52770 6.89774 7.45484 7.91882 8.12622 8.36122 9.13460 9.86101 10.05561 11.34718 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.002728 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.422846 B =10262.212899 C =10898.361385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.082 0.918 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.099 0.901 15 N -0.700 5.700 16 C 0.557 3.443 17 O -0.538 6.538 18 C -0.119 4.119 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.117 4.117 22 C 0.104 3.896 23 F -0.210 7.210 24 C -0.106 4.106 25 C -0.063 4.063 26 C -0.163 4.163 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.401 0.599 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.447 -20.903 1.454 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.117 0.883 15 N -0.351 5.351 16 C 0.344 3.656 17 O -0.416 6.416 18 C -0.122 4.122 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.118 4.118 22 C 0.049 3.951 23 F -0.191 7.191 24 C -0.124 4.124 25 C -0.082 4.082 26 C -0.202 4.202 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.086 0.914 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.735 -20.655 0.896 25.388 hybrid contribution 0.176 1.144 0.329 1.203 sum 14.910 -19.511 1.225 24.587 Atomic orbital electron populations 1.69702 1.05150 1.25958 1.57108 1.24703 0.95270 0.97330 1.01752 0.86544 0.79205 0.84873 0.77861 1.20993 1.21673 1.20260 1.19119 0.80639 0.94773 1.43501 0.89166 1.42744 1.04122 1.01952 1.88751 1.21608 0.89422 0.90067 0.92828 0.90054 1.24285 0.96512 1.00906 1.00099 1.21832 1.00119 0.78944 0.98073 0.88315 1.45623 1.40240 1.07261 1.41960 1.18226 0.80603 0.85411 0.81325 1.90768 1.37613 1.80672 1.32522 1.20108 0.99307 0.93615 0.99217 1.21382 0.96952 0.96308 0.95901 1.21014 0.99115 0.92602 0.99441 1.20445 0.97652 0.95911 0.97755 1.20853 0.93299 0.92237 0.88669 1.92826 1.71347 1.94427 1.60523 1.21043 0.98017 0.95982 0.97381 1.21297 0.97054 0.91922 0.97879 1.23892 0.99366 0.99388 0.97588 0.92970 0.80350 0.89538 0.91890 0.76351 0.84946 0.84936 0.89535 0.89620 0.85033 0.84224 0.91354 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 21.73 27.74 -169.99 -4.71 17.01 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.89 10.45 -15.06 -0.16 -7.04 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.74 -16.78 5.20 -52.64 -0.27 -17.05 16 10 C 0.17 3.08 4.36 -67.12 -0.29 2.79 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.18 -2.90 7.68 -25.92 -0.20 -3.10 16 13 C 0.12 1.64 4.32 -67.12 -0.29 1.35 16 14 H 0.10 1.46 7.46 -51.93 -0.39 1.08 16 15 N -0.70 -8.70 5.21 -53.96 -0.28 -8.98 16 16 C 0.56 7.56 7.77 -12.33 -0.10 7.47 16 17 O -0.54 -9.10 15.95 5.32 0.08 -9.02 16 18 C -0.12 -1.31 5.87 -104.97 -0.62 -1.93 16 19 C -0.09 -0.77 9.54 -39.19 -0.37 -1.14 16 20 C -0.10 -0.80 9.68 -39.64 -0.38 -1.19 16 21 C -0.12 -0.89 5.60 -104.53 -0.59 -1.48 16 22 C 0.10 0.59 7.67 36.01 0.28 0.87 16 23 F -0.21 -1.84 17.34 2.25 0.04 -1.80 16 24 C -0.11 -0.85 9.68 -39.64 -0.38 -1.24 16 25 C -0.06 -0.63 9.60 -39.18 -0.38 -1.01 16 26 C -0.16 -2.34 7.58 -25.91 -0.20 -2.54 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.36 8.14 5.78 -40.82 -0.24 7.91 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 4.07 6.74 -40.82 -0.27 3.79 16 32 H 0.13 0.93 6.41 -52.48 -0.34 0.60 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.09 0.33 8.08 -51.92 -0.42 -0.09 16 35 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.14 1.40 7.65 -52.49 -0.40 1.00 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -33.81 334.78 -8.12 -41.93 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.02 Total: 9.07 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.77 Total: -8.12 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.22 Total: -54.11 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.81 -8.12 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021109041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.661 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds