Wall clock time and date at job start Tue Mar 31 2020 07:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47374 * 270.00024 * 3 2 1 5 5 H 1.48503 * 109.47109 * 29.99936 * 3 2 1 6 6 H 1.48501 * 109.47274 * 149.99607 * 3 2 1 7 7 C 1.38814 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99711 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00413 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00479 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90477 * 336.25133 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50306 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.08997 * 113.61646 * 220.02209 * 13 12 10 15 15 N 1.46499 * 113.61746 * 89.11614 * 13 12 10 16 16 C 1.34771 * 119.99903 * 107.50534 * 15 13 12 17 17 O 1.21554 * 120.00213 * 0.02562 * 16 15 13 18 18 C 1.47848 * 119.99690 * 180.02562 * 16 15 13 19 19 C 1.39573 * 120.14787 * 359.72326 * 18 16 15 20 20 C 1.37957 * 119.85398 * 179.74479 * 19 18 16 21 21 C 1.38358 * 120.14405 * 0.53268 * 20 19 18 22 22 C 1.50702 * 119.85265 * 179.71839 * 21 20 19 23 23 F 1.39900 * 109.47326 * 270.02114 * 22 21 20 24 24 C 1.38355 * 120.29175 * 359.73869 * 21 20 19 25 25 C 1.37954 * 120.14853 * 359.97438 * 24 21 20 26 26 C 1.53784 * 113.61569 * 205.00086 * 10 9 7 27 27 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 28 28 H 0.97009 * 119.99987 * 0.02562 * 9 7 2 29 29 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 30 30 H 1.08999 * 113.69146 * 254.54138 * 12 10 9 31 31 H 0.97001 * 119.99349 * 287.50724 * 15 13 12 32 32 H 1.08005 * 120.06973 * 0.02562 * 19 18 16 33 33 H 1.07999 * 119.92579 * 180.27278 * 20 19 18 34 34 H 1.09010 * 109.47152 * 30.02385 * 22 21 20 35 35 H 1.08999 * 109.46916 * 150.02100 * 22 21 20 36 36 H 1.08006 * 119.92342 * 179.97438 * 24 21 20 37 37 H 1.08002 * 120.07708 * 180.02562 * 25 24 21 38 38 H 1.09004 * 113.61451 * 105.47149 * 26 10 9 39 39 H 1.08994 * 113.61477 * 334.56451 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5282 -3.2979 0.4050 12 6 4.7877 -2.7922 -1.3425 13 6 5.9848 -3.3093 -0.5274 14 1 6.9516 -3.0421 -0.9540 15 7 5.8881 -4.7289 -0.1787 16 6 6.6788 -5.6295 -0.7951 17 8 7.4725 -5.2639 -1.6401 18 6 6.5808 -7.0622 -0.4436 19 6 5.6746 -7.4847 0.5303 20 6 5.5845 -8.8237 0.8499 21 6 6.3977 -9.7457 0.2152 22 6 6.2982 -11.2061 0.5739 23 9 7.1843 -11.4912 1.6182 24 6 7.3020 -9.3329 -0.7471 25 6 7.3981 -7.9977 -1.0802 26 6 5.5259 -2.3660 0.5972 27 1 -0.4849 0.8400 0.0004 28 1 3.8647 -0.3621 0.0014 29 1 5.0148 -1.9088 -1.9393 30 1 4.2797 -3.5696 -1.9133 31 1 5.2550 -5.0205 0.4958 32 1 5.0422 -6.7653 1.0294 33 1 4.8806 -9.1524 1.6001 34 1 5.2799 -11.4343 0.8888 35 1 6.5541 -11.8119 -0.2953 36 1 7.9342 -10.0577 -1.2385 37 1 8.1042 -7.6768 -1.8319 38 1 5.6130 -2.7996 1.5934 39 1 5.9547 -1.3662 0.5306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021109041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:09 Heat of formation + Delta-G solvation = -48.428956 kcal Electronic energy + Delta-G solvation = -21987.566257 eV Core-core repulsion = 18423.424044 eV Total energy + Delta-G solvation = -3564.142214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.59117 -41.54285 -40.13425 -38.98048 -35.90742 -34.45614 -33.28406 -32.38072 -31.87201 -28.05433 -26.58970 -26.33893 -24.14421 -23.77257 -23.26388 -21.61481 -20.69030 -19.54511 -18.99350 -17.61831 -17.15760 -16.98659 -16.78003 -16.53189 -16.29441 -16.08601 -15.87385 -15.41155 -15.19522 -14.88681 -14.55547 -14.33523 -14.11849 -13.93543 -13.80984 -13.45088 -13.34140 -12.89709 -12.59531 -12.30955 -12.10536 -12.05710 -11.87871 -11.83666 -11.82607 -11.26983 -11.11323 -10.89975 -10.23772 -10.03730 -9.93170 -9.28751 -8.02708 -5.35971 -0.33042 0.32992 1.38857 1.42091 1.49187 1.71058 2.03087 2.48739 2.74952 3.27295 3.40912 3.59188 3.67406 3.69419 3.72427 3.79592 3.91579 4.12168 4.13633 4.21925 4.25118 4.35850 4.52860 4.64830 4.66628 4.81594 4.86540 4.88562 4.97324 5.08533 5.13557 5.17597 5.20037 5.29116 5.38954 5.60651 5.76999 5.80182 6.22330 6.45589 7.07607 7.10490 7.84410 8.02921 9.18653 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.002728 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.422846 B =10262.212899 C =10898.361385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.741 5.741 10 C 0.155 3.845 11 H 0.081 0.919 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.097 0.903 15 N -0.693 5.693 16 C 0.556 3.444 17 O -0.579 6.579 18 C -0.142 4.142 19 C -0.088 4.088 20 C -0.106 4.106 21 C -0.116 4.116 22 C 0.100 3.900 23 F -0.228 7.228 24 C -0.107 4.107 25 C -0.077 4.077 26 C -0.142 4.142 27 H 0.257 0.743 28 H 0.367 0.633 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.413 0.587 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.001 -22.087 2.463 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.382 5.382 10 C 0.046 3.954 11 H 0.099 0.901 12 C -0.216 4.216 13 C 0.024 3.976 14 H 0.115 0.885 15 N -0.344 5.344 16 C 0.345 3.655 17 O -0.460 6.460 18 C -0.145 4.145 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.046 3.954 23 F -0.209 7.209 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.201 0.799 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.251 0.749 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.172 0.828 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.338 -21.891 1.928 27.384 hybrid contribution -0.323 1.318 -0.010 1.357 sum 16.016 -20.573 1.918 26.143 Atomic orbital electron populations 1.69883 1.07181 1.26665 1.59734 1.25527 0.96117 1.01335 1.02735 0.85422 0.78849 0.79646 0.77944 1.20841 1.22433 1.17150 1.19108 0.82773 0.93476 1.41064 0.92277 1.42746 1.02457 1.03927 1.89070 1.21949 0.90821 0.88244 0.94402 0.90066 1.24185 0.97428 1.00660 0.99336 1.21593 0.98862 0.79890 0.97284 0.88538 1.45537 1.40314 1.06506 1.42020 1.18662 0.79771 0.86547 0.80485 1.90739 1.39358 1.81494 1.34368 1.20002 1.01259 0.92083 1.01115 1.21577 0.96442 0.97391 0.95226 1.21369 0.99349 0.92072 0.99623 1.20789 0.96754 0.97218 0.96881 1.21117 0.94212 0.91029 0.89062 1.92792 1.72155 1.94434 1.61511 1.21306 0.98273 0.95440 0.97452 1.21371 0.97206 0.92920 0.98125 1.23725 0.95789 1.00037 0.98557 0.93394 0.79898 0.90015 0.92845 0.74920 0.83424 0.82473 0.87217 0.87353 0.82813 0.85139 0.89137 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.95 44.70 27.74 68.60 1.90 46.60 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 7 C -0.23 -12.92 10.45 84.03 0.88 -12.04 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.74 -32.91 5.20 -320.45 -1.67 -34.58 16 10 C 0.16 5.34 4.36 45.52 0.20 5.54 16 11 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 12 C -0.17 -5.60 7.68 31.12 0.24 -5.36 16 13 C 0.13 3.47 4.32 45.52 0.20 3.67 16 14 H 0.10 2.73 7.46 -2.39 -0.02 2.71 16 15 N -0.69 -16.33 5.21 -442.91 -2.31 -18.64 16 16 C 0.56 14.89 7.77 86.79 0.67 15.57 16 17 O -0.58 -19.80 15.95 -3.88 -0.06 -19.86 16 18 C -0.14 -3.01 5.87 -20.09 -0.12 -3.13 16 19 C -0.09 -1.39 9.54 22.53 0.21 -1.18 16 20 C -0.11 -1.37 9.68 22.23 0.22 -1.15 16 21 C -0.12 -1.47 5.60 -19.81 -0.11 -1.58 16 22 C 0.10 0.82 7.67 71.24 0.55 1.36 16 23 F -0.23 -3.43 17.34 44.97 0.78 -2.65 16 24 C -0.11 -1.53 9.68 22.23 0.22 -1.32 16 25 C -0.08 -1.52 9.60 22.53 0.22 -1.30 16 26 C -0.14 -3.70 7.58 31.12 0.24 -3.46 16 27 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.37 15.63 5.78 -92.70 -0.54 15.09 16 29 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.41 7.63 6.74 -92.71 -0.62 7.00 16 32 H 0.15 1.75 6.41 -2.91 -0.02 1.73 16 33 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.11 0.42 8.08 -2.38 -0.02 0.40 16 35 H 0.11 0.41 8.08 -2.39 -0.02 0.40 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.13 2.71 7.65 -2.91 -0.02 2.69 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 2.50 8.12 -2.39 -0.02 2.48 16 Total: -1.00 -74.72 334.78 2.88 -71.84 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.13 Total: 27.22 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.07 Total: -7.74 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.67 Total: -115.41 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -74.72 2.88 -71.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021109041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.408 kcal (2) G-P(sol) polarization free energy of solvation -74.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds