Wall clock time and date at job start Tue Mar 31 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00308 * 2 1 4 4 H 1.48496 * 109.47228 * 89.99301 * 3 2 1 5 5 H 1.48494 * 109.47030 * 210.00161 * 3 2 1 6 6 H 1.48502 * 109.46714 * 329.99697 * 3 2 1 7 7 C 1.38814 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00146 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00123 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84999 * 45.07134 * 10 9 7 12 12 C 1.53778 * 113.61636 * 176.38201 * 10 9 7 13 13 C 1.53775 * 87.08446 * 89.11073 * 12 10 9 14 14 H 1.08999 * 113.61880 * 139.97777 * 13 12 10 15 15 N 1.46500 * 113.69483 * 270.87622 * 13 12 10 16 16 C 1.34776 * 119.99824 * 255.86629 * 15 13 12 17 17 O 1.21282 * 120.00000 * 359.97438 * 16 15 13 18 18 C 1.50706 * 119.99861 * 179.97438 * 16 15 13 19 19 H 1.08994 * 109.46958 * 14.99811 * 18 16 15 20 20 F 1.39906 * 109.46844 * 254.99604 * 18 16 15 21 21 C 1.50700 * 109.47049 * 134.99869 * 18 16 15 22 22 C 1.38235 * 120.00060 * 64.72484 * 21 18 16 23 23 C 1.38234 * 119.99703 * 179.80761 * 22 21 18 24 24 C 1.38237 * 120.00126 * 0.39981 * 23 22 21 25 25 C 1.38234 * 120.00019 * 359.85523 * 24 23 22 26 26 C 1.38236 * 119.99598 * 244.99746 * 21 18 16 27 27 C 1.53781 * 87.08028 * 25.43303 * 13 12 10 28 28 H 0.96998 * 119.99473 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99979 * 359.97438 * 9 7 2 30 30 H 1.08998 * 113.61809 * 203.66222 * 12 10 9 31 31 H 1.09001 * 113.61033 * 334.56005 * 12 10 9 32 32 H 0.96997 * 120.00031 * 75.86141 * 15 13 12 33 33 H 1.07998 * 120.00015 * 0.02562 * 22 21 18 34 34 H 1.08004 * 119.99824 * 180.22848 * 23 22 21 35 35 H 1.08002 * 119.99895 * 179.83375 * 24 23 22 36 36 H 1.07991 * 120.00090 * 179.97438 * 25 24 23 37 37 H 1.07997 * 120.00296 * 359.97438 * 26 21 18 38 38 H 1.08998 * 113.61805 * 220.01677 * 27 13 12 39 39 H 1.09006 * 113.61376 * 89.11423 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.7097 -3.1920 -0.7104 12 6 5.6379 -2.3014 -0.0872 13 6 5.6410 -2.2382 1.4492 14 1 6.4741 -2.7719 1.9066 15 7 5.4706 -0.8847 1.9832 16 6 6.5300 -0.2204 2.4860 17 8 7.6243 -0.7433 2.4969 18 6 6.3549 1.1723 3.0347 19 1 5.2944 1.3714 3.1887 20 9 6.8767 2.1002 2.1269 21 6 7.0840 1.2900 4.3483 22 6 8.4611 1.1757 4.3872 23 6 9.1302 1.2876 5.5916 24 6 8.4215 1.5056 6.7583 25 6 7.0440 1.6146 6.7202 26 6 6.3752 1.5066 5.5152 27 6 4.3370 -3.0523 1.4069 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3622 0.0007 30 1 6.1518 -3.1745 -0.4893 31 1 5.9470 -1.3707 -0.5631 32 1 4.5954 -0.4666 1.9747 33 1 9.0145 1.0024 3.4761 34 1 10.2064 1.2019 5.6215 35 1 8.9441 1.5903 7.6997 36 1 6.4904 1.7845 7.6317 37 1 5.2990 1.5919 5.4854 38 1 3.5958 -2.7279 2.1373 39 1 4.4952 -4.1308 1.4132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022777287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:55 Heat of formation + Delta-G solvation = -16.842507 kcal Electronic energy + Delta-G solvation = -23342.357181 eV Core-core repulsion = 19779.584658 eV Total energy + Delta-G solvation = -3562.772523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.97212 -40.15208 -39.22631 -37.98075 -33.87040 -32.96975 -32.33716 -31.05965 -30.57190 -27.55264 -25.36977 -24.55535 -22.90718 -22.77317 -21.67628 -20.43625 -19.14560 -17.83838 -17.50612 -17.35312 -16.61250 -16.02441 -15.66823 -14.94184 -14.88303 -14.69281 -14.45919 -14.28313 -13.96686 -13.79609 -13.55513 -12.89891 -12.85686 -12.65745 -12.23904 -12.16279 -12.12600 -11.76853 -11.28461 -11.13001 -11.11524 -10.95205 -10.53499 -10.34352 -9.84948 -9.73224 -9.69690 -9.08989 -9.05320 -9.03267 -8.84804 -7.42551 -5.90351 -3.28106 1.03284 1.25491 2.43937 2.99700 3.21424 3.28908 3.35526 3.60750 4.17351 4.43734 4.46155 4.49899 4.80952 4.84564 4.91098 4.96463 5.00290 5.12825 5.17526 5.30629 5.32143 5.46448 5.54952 5.66757 5.70931 5.88831 5.97372 6.05627 6.17425 6.23387 6.33107 6.35950 6.38478 6.51001 6.62919 6.78374 6.82498 7.54199 7.87036 8.13535 8.29366 9.05604 9.77465 9.96250 11.27519 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.004903 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.568035 B = 5709.435412 C = 6537.015847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.870 3.130 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.094 0.906 9 N -0.735 5.735 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.165 4.165 13 C 0.122 3.878 14 H 0.094 0.906 15 N -0.693 5.693 16 C 0.498 3.502 17 O -0.523 6.523 18 C 0.123 3.877 19 H 0.108 0.892 20 F -0.182 7.182 21 C -0.124 4.124 22 C -0.067 4.067 23 C -0.127 4.127 24 C -0.108 4.108 25 C -0.127 4.127 26 C -0.095 4.095 27 C -0.175 4.175 28 H 0.261 0.739 29 H 0.360 0.640 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.265 1.002 11.094 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.700 3.300 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.112 0.888 9 N -0.378 5.378 10 C 0.056 3.944 11 H 0.080 0.920 12 C -0.204 4.204 13 C 0.017 3.983 14 H 0.112 0.888 15 N -0.345 5.345 16 C 0.280 3.720 17 O -0.399 6.399 18 C 0.083 3.917 19 H 0.126 0.874 20 F -0.163 7.163 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.145 4.145 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.113 4.113 27 C -0.216 4.216 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.773 0.595 11.044 19.264 hybrid contribution 0.042 1.540 -0.124 1.546 sum 15.816 2.135 10.920 19.337 Atomic orbital electron populations 1.69685 1.05033 1.25968 1.56777 1.24664 0.95193 0.96980 1.01784 0.86776 0.79688 0.85473 0.78065 1.20797 1.20112 1.21208 1.19060 0.80224 0.94896 1.43688 0.88815 1.42633 1.04080 1.01490 1.89566 1.21158 0.89713 0.89252 0.94230 0.91955 1.23756 0.98341 1.02481 0.95821 1.21857 0.99583 0.82376 0.94486 0.88799 1.45968 1.11649 1.16863 1.60068 1.20661 0.85208 0.87548 0.78536 1.90678 1.25021 1.68372 1.55839 1.20311 0.99381 0.85909 0.86054 0.87434 1.92916 1.88815 1.66087 1.68478 1.19738 0.94750 1.04687 0.93318 1.21114 0.93452 0.95159 0.98830 1.21171 1.00126 1.00832 0.92418 1.21249 0.94393 0.98671 0.98295 1.21092 0.94591 1.01226 0.97623 1.21061 1.00108 0.98299 0.91857 1.24028 0.96126 0.98898 1.02516 0.92846 0.80583 0.88862 0.91368 0.75117 0.84996 0.85715 0.85895 0.85609 0.85398 0.90229 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.87 20.71 27.74 -169.99 -4.71 16.00 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.56 10.47 -15.06 -0.16 -6.72 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.73 -16.05 4.22 -52.64 -0.22 -16.27 16 10 C 0.17 2.99 4.54 -67.12 -0.30 2.68 16 11 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 12 C -0.16 -2.53 7.57 -25.92 -0.20 -2.73 16 13 C 0.12 1.87 4.27 -67.12 -0.29 1.59 16 14 H 0.09 1.41 7.55 -51.93 -0.39 1.02 16 15 N -0.69 -11.12 4.95 -53.02 -0.26 -11.38 16 16 C 0.50 8.06 7.16 -10.98 -0.08 7.98 16 17 O -0.52 -9.47 14.82 5.56 0.08 -9.39 16 18 C 0.12 1.78 4.01 -29.03 -0.12 1.66 16 19 H 0.11 1.35 7.74 -51.93 -0.40 0.95 16 20 F -0.18 -2.92 16.92 2.25 0.04 -2.89 16 21 C -0.12 -1.66 5.01 -104.62 -0.52 -2.19 16 22 C -0.07 -0.89 8.57 -39.58 -0.34 -1.23 16 23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.10 -1.09 9.67 -39.58 -0.38 -1.47 16 27 C -0.17 -2.71 7.61 -25.92 -0.20 -2.90 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.36 7.83 4.84 -40.82 -0.20 7.63 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.41 6.82 7.08 -40.82 -0.29 6.53 16 33 H 0.13 1.84 7.39 -52.49 -0.39 1.45 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.23 7.95 -52.49 -0.42 0.82 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -31.04 331.66 -8.24 -39.28 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.06 Total: 14.70 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.87 Total: -8.01 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.29 Total: -54.68 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.04 -8.24 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022777287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds