Wall clock time and date at job start Tue Mar 31 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48507 * 109.46646 * 269.72407 * 3 2 1 5 5 H 1.48507 * 109.47216 * 29.71892 * 3 2 1 6 6 H 1.48497 * 109.47472 * 149.72072 * 3 2 1 7 7 C 1.38816 * 119.99801 * 179.71739 * 2 1 3 8 8 H 1.07998 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99409 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99537 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84760 * 333.58804 * 10 9 7 12 12 C 1.53777 * 113.61728 * 104.89620 * 10 9 7 13 13 C 1.53778 * 87.07870 * 89.11476 * 12 10 9 14 14 H 1.09004 * 113.61537 * 139.98705 * 13 12 10 15 15 N 1.46498 * 113.69290 * 270.87171 * 13 12 10 16 16 C 1.34777 * 120.00421 * 182.57787 * 15 13 12 17 17 O 1.21282 * 119.99890 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00317 * 180.02562 * 16 15 13 19 19 H 1.08996 * 109.46842 * 344.99788 * 18 16 15 20 20 F 1.39901 * 109.47041 * 104.99659 * 18 16 15 21 21 C 1.50690 * 109.47126 * 224.99574 * 18 16 15 22 22 C 1.38235 * 120.00448 * 294.72695 * 21 18 16 23 23 C 1.38237 * 120.00512 * 179.80602 * 22 21 18 24 24 C 1.38240 * 119.99618 * 0.40366 * 23 22 21 25 25 C 1.38233 * 120.00181 * 359.84939 * 24 23 22 26 26 C 1.38236 * 120.00090 * 114.99945 * 21 18 16 27 27 C 1.53777 * 87.08250 * 25.43458 * 13 12 10 28 28 H 0.97006 * 120.00247 * 0.27957 * 1 2 3 29 29 H 0.96998 * 120.00269 * 0.02562 * 9 7 2 30 30 H 1.08998 * 113.61793 * 203.66337 * 12 10 9 31 31 H 1.08999 * 113.61446 * 334.56774 * 12 10 9 32 32 H 0.97001 * 120.00233 * 2.57641 * 15 13 12 33 33 H 1.08003 * 119.99560 * 0.02562 * 22 21 18 34 34 H 1.07998 * 120.00140 * 180.22579 * 23 22 21 35 35 H 1.07995 * 119.99563 * 179.83005 * 24 23 22 36 36 H 1.07995 * 120.00406 * 179.97438 * 25 24 23 37 37 H 1.08006 * 119.99800 * 359.97438 * 26 21 18 38 38 H 1.09008 * 113.60938 * 220.01901 * 27 13 12 39 39 H 1.08998 * 113.61498 * 89.11699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5035 2.0429 -1.4002 5 1 1.4447 2.6544 0.6941 6 1 3.5448 1.4419 0.7059 7 6 2.0102 -1.2022 0.0059 8 1 1.4702 -2.1375 0.0101 9 7 3.3796 -1.2021 0.0065 10 6 4.1121 -2.4709 0.0122 11 1 3.5445 -3.2853 0.4622 12 6 4.7344 -2.8291 -1.3477 13 6 5.9789 -2.0472 -0.8956 14 1 6.9189 -2.5204 -1.1795 15 7 5.9343 -0.6226 -1.2343 16 6 6.9830 0.1725 -0.9435 17 8 7.9635 -0.2914 -0.4009 18 6 6.9369 1.6381 -1.2914 19 1 6.1226 1.8194 -1.9929 20 9 6.7262 2.3870 -0.1287 21 6 8.2434 2.0461 -1.9218 22 6 9.4096 2.0103 -1.1805 23 6 10.6087 2.3807 -1.7600 24 6 10.6403 2.7949 -3.0785 25 6 9.4734 2.8357 -3.8183 26 6 8.2749 2.4615 -3.2399 27 6 5.5481 -2.3507 0.5491 28 1 -0.4851 0.8401 -0.0041 29 1 3.8646 -0.3621 0.0031 30 1 4.9129 -3.8964 -1.4787 31 1 4.2195 -2.3779 -2.1959 32 1 5.1500 -0.2515 -1.6680 33 1 9.3843 1.6895 -0.1495 34 1 11.5203 2.3492 -1.1818 35 1 11.5767 3.0869 -3.5303 36 1 9.4980 3.1597 -4.8482 37 1 7.3631 2.4933 -3.8180 38 1 5.6902 -1.5131 1.2321 39 1 5.9492 -3.2871 0.9367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022777288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:58 Heat of formation + Delta-G solvation = -15.762070 kcal Electronic energy + Delta-G solvation = -23406.701463 eV Core-core repulsion = 19843.975792 eV Total energy + Delta-G solvation = -3562.725671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.96508 -40.19116 -39.25155 -37.93514 -33.88986 -32.98985 -32.35681 -31.09141 -30.54751 -27.57621 -25.34203 -24.55166 -22.92397 -22.80221 -21.70780 -20.43270 -19.19773 -17.83134 -17.50922 -17.37243 -16.65185 -16.03818 -15.68413 -15.03213 -14.88797 -14.68392 -14.47943 -14.34498 -13.91703 -13.66543 -13.58255 -12.90988 -12.77522 -12.65714 -12.25449 -12.19395 -12.07461 -11.84326 -11.31430 -11.14437 -11.06991 -10.94858 -10.54497 -10.29559 -9.93695 -9.72567 -9.64011 -9.10352 -9.07475 -9.06273 -8.82582 -7.40600 -5.87602 -3.24737 1.00353 1.22272 2.42667 2.96441 3.24066 3.32926 3.38404 3.57733 4.14794 4.40432 4.45599 4.48098 4.77094 4.81032 4.88293 4.93606 4.99843 5.10190 5.20052 5.28806 5.32575 5.43643 5.60326 5.67221 5.69693 5.85741 5.99686 6.02930 6.19800 6.22988 6.30469 6.33469 6.40368 6.48918 6.60087 6.75264 6.80822 7.46007 7.89866 8.10008 8.32175 9.08868 9.80960 10.00019 11.30282 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.004903 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.764290 B = 5709.860521 C = 6615.375636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.870 3.130 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.094 0.906 9 N -0.730 5.730 10 C 0.170 3.830 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.123 3.877 14 H 0.086 0.914 15 N -0.696 5.696 16 C 0.498 3.502 17 O -0.518 6.518 18 C 0.123 3.877 19 H 0.106 0.894 20 F -0.180 7.180 21 C -0.124 4.124 22 C -0.067 4.067 23 C -0.126 4.126 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.096 4.096 27 C -0.168 4.168 28 H 0.261 0.739 29 H 0.361 0.639 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.407 0.593 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.145 2.752 -7.449 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.699 3.301 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.112 0.888 9 N -0.372 5.372 10 C 0.058 3.942 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.018 3.982 14 H 0.103 0.897 15 N -0.348 5.348 16 C 0.281 3.719 17 O -0.393 6.393 18 C 0.083 3.917 19 H 0.124 0.876 20 F -0.161 7.161 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.146 4.146 26 C -0.114 4.114 27 C -0.208 4.208 28 H 0.071 0.929 29 H 0.195 0.805 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.243 0.757 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.543 2.381 -6.998 20.895 hybrid contribution 0.077 1.515 -0.135 1.523 sum 19.621 3.897 -7.133 21.237 Atomic orbital electron populations 1.69683 1.05042 1.25965 1.56862 1.24660 0.95207 0.97037 1.01751 0.86780 0.79888 0.85420 0.78014 1.20788 1.21220 1.19926 1.19119 0.80295 0.94912 1.43655 0.88824 1.42622 1.04012 1.01610 1.88921 1.21133 0.90384 0.89975 0.92691 0.90837 1.24116 0.95831 0.99423 1.02310 1.21866 0.99156 0.79917 0.97248 0.89651 1.45901 1.18584 1.09564 1.60772 1.20632 0.83535 0.88070 0.79668 1.90688 1.32236 1.75339 1.41032 1.20301 0.97734 0.88383 0.85247 0.87599 1.92936 1.95978 1.76742 1.50430 1.19744 0.93957 1.03528 0.95231 1.21127 0.91499 0.95300 1.00603 1.21181 0.97899 0.99935 0.95429 1.21250 0.98296 0.98644 0.94428 1.21084 0.92404 1.01012 1.00071 1.21032 0.98765 0.97835 0.93792 1.23868 0.98765 1.02087 0.96107 0.92872 0.80547 0.89241 0.90553 0.75681 0.84966 0.85673 0.85884 0.85636 0.85489 0.91323 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.87 21.26 27.73 -169.99 -4.71 16.55 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 7 C -0.25 -6.77 10.46 -15.06 -0.16 -6.93 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.73 -16.44 4.83 -52.64 -0.25 -16.69 16 10 C 0.17 3.10 4.55 -67.12 -0.31 2.79 16 11 H 0.07 1.36 8.11 -51.93 -0.42 0.93 16 12 C -0.18 -2.62 7.58 -25.92 -0.20 -2.82 16 13 C 0.12 1.85 3.99 -67.12 -0.27 1.59 16 14 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 15 N -0.70 -10.83 4.34 -53.02 -0.23 -11.06 16 16 C 0.50 8.04 7.16 -10.98 -0.08 7.96 16 17 O -0.52 -9.44 15.16 5.56 0.08 -9.36 16 18 C 0.12 1.77 4.01 -29.04 -0.12 1.65 16 19 H 0.11 1.25 7.74 -51.93 -0.40 0.85 16 20 F -0.18 -3.03 16.91 2.25 0.04 -2.99 16 21 C -0.12 -1.62 5.00 -104.63 -0.52 -2.15 16 22 C -0.07 -0.88 8.57 -39.58 -0.34 -1.22 16 23 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.10 -1.04 9.67 -39.58 -0.38 -1.42 16 27 C -0.17 -2.72 7.62 -25.92 -0.20 -2.91 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 8.04 4.23 -40.82 -0.17 7.87 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.41 6.19 7.72 -40.82 -0.32 5.87 16 33 H 0.13 1.86 7.43 -52.48 -0.39 1.47 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.10 7.95 -52.48 -0.42 0.69 16 38 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -32.33 332.25 -8.23 -40.56 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.09 Total: 13.60 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.85 Total: -8.05 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.29 Total: -55.33 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.33 -8.23 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022777288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds