Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48507 * 109.46646 * 269.72407 * 3 2 1 5 5 H 1.48507 * 109.47216 * 29.71892 * 3 2 1 6 6 H 1.48497 * 109.47472 * 149.72072 * 3 2 1 7 7 C 1.38816 * 119.99801 * 179.71739 * 2 1 3 8 8 H 1.07998 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99409 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99537 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84760 * 333.58804 * 10 9 7 12 12 C 1.53777 * 113.61728 * 104.89620 * 10 9 7 13 13 C 1.53778 * 87.07870 * 89.11476 * 12 10 9 14 14 H 1.09004 * 113.61537 * 139.98705 * 13 12 10 15 15 N 1.46498 * 113.69290 * 270.87171 * 13 12 10 16 16 C 1.34777 * 120.00421 * 182.57787 * 15 13 12 17 17 O 1.21282 * 119.99890 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00317 * 180.02562 * 16 15 13 19 19 H 1.08996 * 109.46842 * 344.99788 * 18 16 15 20 20 F 1.39901 * 109.47041 * 104.99659 * 18 16 15 21 21 C 1.50690 * 109.47126 * 224.99574 * 18 16 15 22 22 C 1.38235 * 120.00448 * 294.72695 * 21 18 16 23 23 C 1.38237 * 120.00512 * 179.80602 * 22 21 18 24 24 C 1.38240 * 119.99618 * 0.40366 * 23 22 21 25 25 C 1.38233 * 120.00181 * 359.84939 * 24 23 22 26 26 C 1.38236 * 120.00090 * 114.99945 * 21 18 16 27 27 C 1.53777 * 87.08250 * 25.43458 * 13 12 10 28 28 H 0.97006 * 120.00247 * 0.27957 * 1 2 3 29 29 H 0.96998 * 120.00269 * 0.02562 * 9 7 2 30 30 H 1.08998 * 113.61793 * 203.66337 * 12 10 9 31 31 H 1.08999 * 113.61446 * 334.56774 * 12 10 9 32 32 H 0.97001 * 120.00233 * 2.57641 * 15 13 12 33 33 H 1.08003 * 119.99560 * 0.02562 * 22 21 18 34 34 H 1.07998 * 120.00140 * 180.22579 * 23 22 21 35 35 H 1.07995 * 119.99563 * 179.83005 * 24 23 22 36 36 H 1.07995 * 120.00406 * 179.97438 * 25 24 23 37 37 H 1.08006 * 119.99800 * 359.97438 * 26 21 18 38 38 H 1.09008 * 113.60938 * 220.01901 * 27 13 12 39 39 H 1.08998 * 113.61498 * 89.11699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5035 2.0429 -1.4002 5 1 1.4447 2.6544 0.6941 6 1 3.5448 1.4419 0.7059 7 6 2.0102 -1.2022 0.0059 8 1 1.4702 -2.1375 0.0101 9 7 3.3796 -1.2021 0.0065 10 6 4.1121 -2.4709 0.0122 11 1 3.5445 -3.2853 0.4622 12 6 4.7344 -2.8291 -1.3477 13 6 5.9789 -2.0472 -0.8956 14 1 6.9189 -2.5204 -1.1795 15 7 5.9343 -0.6226 -1.2343 16 6 6.9830 0.1725 -0.9435 17 8 7.9635 -0.2914 -0.4009 18 6 6.9369 1.6381 -1.2914 19 1 6.1226 1.8194 -1.9929 20 9 6.7262 2.3870 -0.1287 21 6 8.2434 2.0461 -1.9218 22 6 9.4096 2.0103 -1.1805 23 6 10.6087 2.3807 -1.7600 24 6 10.6403 2.7949 -3.0785 25 6 9.4734 2.8357 -3.8183 26 6 8.2749 2.4615 -3.2399 27 6 5.5481 -2.3507 0.5491 28 1 -0.4851 0.8401 -0.0041 29 1 3.8646 -0.3621 0.0031 30 1 4.9129 -3.8964 -1.4787 31 1 4.2195 -2.3779 -2.1959 32 1 5.1500 -0.2515 -1.6680 33 1 9.3843 1.6895 -0.1495 34 1 11.5203 2.3492 -1.1818 35 1 11.5767 3.0869 -3.5303 36 1 9.4980 3.1597 -4.8482 37 1 7.3631 2.4933 -3.8180 38 1 5.6902 -1.5131 1.2321 39 1 5.9492 -3.2871 0.9367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022777288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = -36.010758 kcal Electronic energy + Delta-G solvation = -23407.579512 eV Core-core repulsion = 19843.975792 eV Total energy + Delta-G solvation = -3563.603720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.16040 -41.43869 -40.17355 -39.20681 -35.64073 -34.42759 -33.37247 -32.46412 -31.87320 -28.61400 -26.64532 -26.21628 -24.36807 -23.62959 -22.83149 -21.62753 -20.71242 -19.55393 -18.85469 -18.27425 -17.83482 -17.01080 -16.92632 -16.50531 -16.34965 -15.96606 -15.56756 -15.50910 -15.33154 -14.96348 -14.71497 -14.36703 -13.98934 -13.83441 -13.60608 -13.54289 -13.23093 -13.16131 -12.87776 -12.63490 -12.17346 -12.12249 -11.99745 -11.95942 -11.82528 -11.20841 -10.98443 -10.96545 -10.15346 -9.90808 -9.88645 -9.34518 -8.05311 -5.39050 0.17996 0.42857 1.19811 1.29475 1.37963 1.41698 1.82619 2.42963 2.75582 3.18079 3.24744 3.26854 3.47009 3.52139 3.64327 3.80591 3.90790 4.09433 4.14265 4.17867 4.23673 4.29132 4.53337 4.63401 4.72555 4.86485 4.90774 4.94397 4.99093 5.08165 5.19594 5.23687 5.44105 5.48142 5.51537 5.53395 5.79088 5.99306 6.19322 6.24477 6.87748 7.04221 7.80568 7.98461 9.15979 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.004903 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.764290 B = 5709.860521 C = 6615.375636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.931 3.069 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.065 0.935 9 N -0.735 5.735 10 C 0.146 3.854 11 H 0.068 0.932 12 C -0.153 4.153 13 C 0.125 3.875 14 H 0.100 0.900 15 N -0.696 5.696 16 C 0.496 3.504 17 O -0.544 6.544 18 C 0.117 3.883 19 H 0.132 0.868 20 F -0.198 7.198 21 C -0.144 4.144 22 C -0.094 4.094 23 C -0.134 4.134 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.102 4.102 27 C -0.159 4.159 28 H 0.258 0.742 29 H 0.363 0.637 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.043 0.957 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.607 3.135 -9.511 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.247 4.247 3 Si 0.758 3.242 4 H -0.182 1.182 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.083 0.917 9 N -0.377 5.377 10 C 0.036 3.964 11 H 0.086 0.914 12 C -0.193 4.193 13 C 0.020 3.980 14 H 0.118 0.882 15 N -0.348 5.348 16 C 0.280 3.720 17 O -0.421 6.421 18 C 0.078 3.922 19 H 0.150 0.850 20 F -0.179 7.179 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.152 4.152 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.120 4.120 27 C -0.199 4.199 28 H 0.067 0.933 29 H 0.197 0.803 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.062 0.938 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 22.056 2.729 -9.078 24.007 hybrid contribution -0.636 1.266 0.527 1.511 sum 21.420 3.994 -8.551 23.407 Atomic orbital electron populations 1.69851 1.06913 1.26597 1.59548 1.25359 0.95919 1.00597 1.02779 0.85777 0.78439 0.80742 0.79193 1.18173 1.22478 1.19146 1.19090 0.82298 0.93658 1.41126 0.91732 1.42579 1.02442 1.03409 1.89313 1.21475 0.91152 0.88126 0.95605 0.91423 1.23951 0.94513 1.01415 0.99428 1.21924 0.99856 0.79930 0.96262 0.88202 1.45967 1.18466 1.09848 1.60509 1.20985 0.83094 0.88898 0.79011 1.90668 1.33195 1.76042 1.42172 1.20541 0.99761 0.86904 0.84973 0.84999 1.92889 1.96184 1.77083 1.51757 1.19774 0.93117 1.05235 0.96389 1.21114 0.92940 0.97161 0.99982 1.21432 0.97605 0.99641 0.96477 1.21657 0.99766 0.97168 0.93680 1.21513 0.91752 0.99680 1.01432 1.21335 1.00423 0.97274 0.92923 1.23859 0.96984 1.02645 0.96413 0.93274 0.80318 0.85855 0.91189 0.75460 0.87305 0.84071 0.82789 0.82572 0.83415 0.93822 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.30 13.97 21.65 0.30 -61.00 16 2 C -0.05 -3.13 5.50 84.86 0.47 -2.66 16 3 Si 0.93 44.10 27.73 68.60 1.90 46.00 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.27 -12.10 6.53 99.48 0.65 -11.45 16 7 C -0.23 -12.64 10.46 84.03 0.88 -11.76 16 8 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 9 N -0.74 -32.68 4.83 -320.44 -1.55 -34.22 16 10 C 0.15 5.14 4.55 45.51 0.21 5.35 16 11 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 12 C -0.15 -4.15 7.58 31.12 0.24 -3.92 16 13 C 0.12 3.48 3.99 45.52 0.18 3.66 16 14 H 0.10 2.58 8.05 -2.38 -0.02 2.56 16 15 N -0.70 -20.51 4.34 -440.04 -1.91 -22.42 16 16 C 0.50 15.57 7.16 87.66 0.63 16.20 16 17 O -0.54 -19.70 15.16 -3.04 -0.05 -19.75 16 18 C 0.12 3.26 4.01 29.10 0.12 3.38 16 19 H 0.13 2.85 7.74 -2.39 -0.02 2.83 16 20 F -0.20 -6.63 16.91 44.97 0.76 -5.87 16 21 C -0.14 -3.63 5.00 -19.87 -0.10 -3.73 16 22 C -0.09 -2.45 8.57 22.27 0.19 -2.25 16 23 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 24 C -0.10 -1.63 10.05 22.27 0.22 -1.41 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 26 C -0.10 -1.94 9.67 22.27 0.22 -1.72 16 27 C -0.16 -4.87 7.62 31.12 0.24 -4.63 16 28 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 29 H 0.36 15.80 4.23 -92.71 -0.39 15.41 16 30 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.41 11.67 7.72 -92.71 -0.72 10.95 16 33 H 0.11 3.23 7.43 -2.91 -0.02 3.21 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.15 2.08 7.95 -2.91 -0.02 2.06 16 38 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -71.97 332.25 3.31 -68.66 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.09 Total: 36.24 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 3.93 Total: -7.64 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -3.15 Total: -117.65 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.76 Total: -5.87 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.90 Total: 46.00 kcal Total: -71.97 3.31 -68.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022777288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.652 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds