Wall clock time and date at job start Tue Mar 31 2020 07:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47034 * 270.00182 * 3 2 1 5 5 H 1.48495 * 109.47227 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47074 * 150.00423 * 3 2 1 7 7 C 1.38815 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99888 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.90773 * 336.25150 * 10 9 7 12 12 C 1.53778 * 113.61440 * 107.50760 * 10 9 7 13 13 C 1.53780 * 87.08454 * 139.98212 * 12 10 9 14 14 H 1.08997 * 113.69618 * 89.12089 * 13 12 10 15 15 N 1.46503 * 113.61660 * 220.02238 * 13 12 10 16 16 C 1.34784 * 119.99566 * 252.49657 * 15 13 12 17 17 O 1.21274 * 119.99883 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99605 * 179.97438 * 16 15 13 19 19 C 1.50697 * 109.46835 * 179.97438 * 18 16 15 20 20 C 1.38247 * 119.97529 * 270.01638 * 19 18 16 21 21 C 1.38193 * 120.03115 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.97094 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.02117 * 179.97438 * 22 21 20 24 24 C 1.38457 * 119.94943 * 0.02562 * 22 21 20 25 25 C 1.38194 * 119.97373 * 359.97438 * 24 22 21 26 26 C 1.53785 * 113.61479 * 205.00467 * 10 9 7 27 27 H 0.96994 * 120.00309 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00455 * 0.02562 * 9 7 2 29 29 H 1.09004 * 113.61735 * 25.43100 * 12 10 9 30 30 H 1.09008 * 113.61411 * 254.52635 * 12 10 9 31 31 H 0.96999 * 120.00501 * 72.48824 * 15 13 12 32 32 H 1.09001 * 109.47692 * 59.99314 * 18 16 15 33 33 H 1.09003 * 109.47190 * 299.99595 * 18 16 15 34 34 H 1.08001 * 119.98390 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.01643 * 180.27414 * 21 20 19 36 36 H 1.08004 * 120.00993 * 180.02562 * 24 22 21 37 37 H 1.07998 * 119.98911 * 180.02562 * 25 24 22 38 38 H 1.08996 * 113.61873 * 105.46792 * 26 10 9 39 39 H 1.09002 * 113.61267 * 334.56470 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 -0.4049 12 6 1.9991 -4.4021 1.3432 13 6 1.8481 -5.6976 0.5284 14 1 2.7979 -6.1646 0.2681 15 7 0.8875 -6.6433 1.1023 16 6 1.3253 -7.7707 1.6972 17 8 2.5141 -8.0025 1.7569 18 6 0.3372 -8.7432 2.2880 19 6 1.0784 -9.9107 2.8868 20 6 1.3584 -11.0215 2.1129 21 6 2.0384 -12.0925 2.6608 22 6 2.4390 -12.0530 3.9856 23 9 3.1035 -13.0997 4.5224 24 6 2.1572 -10.9404 4.7601 25 6 1.4770 -9.8706 4.2100 26 6 1.2603 -4.8287 -0.5961 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 1.1208 -4.1570 1.9403 30 1 2.9272 -4.3502 1.9125 31 1 -0.0634 -6.4580 1.0543 32 1 -0.3326 -9.1009 1.5060 33 1 -0.2437 -8.2446 3.0639 34 1 1.0454 -11.0523 1.0797 35 1 2.2609 -12.9583 2.0548 36 1 2.4696 -10.9084 5.7935 37 1 1.2574 -9.0025 4.8137 38 1 1.5918 -5.1211 -1.5924 39 1 0.1800 -4.7002 -0.5292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023043650.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:43 Heat of formation + Delta-G solvation = -30.557267 kcal Electronic energy + Delta-G solvation = -21775.078999 eV Core-core repulsion = 18211.711760 eV Total energy + Delta-G solvation = -3563.367239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.11112 -40.22762 -39.09624 -37.81453 -34.10186 -33.04627 -32.43472 -31.39809 -29.92547 -27.62285 -25.15248 -24.48674 -23.33329 -22.73185 -21.57211 -20.38635 -19.28444 -17.91939 -17.24726 -16.96473 -16.70199 -16.40116 -15.79333 -15.57409 -15.08574 -14.59981 -14.55433 -14.21758 -13.84212 -13.82435 -13.56532 -13.06385 -12.96229 -12.44961 -12.31976 -12.00207 -11.95557 -11.93472 -11.28891 -11.25179 -10.94762 -10.66700 -10.51835 -10.36154 -10.07954 -9.81758 -9.62675 -9.35160 -8.94104 -8.79499 -8.77412 -7.01601 -5.83103 -3.11957 0.85949 0.99335 2.63910 3.10498 3.40640 3.46213 3.47634 3.52313 4.01750 4.34633 4.41521 4.55903 4.63415 4.82498 4.85717 4.97683 5.05258 5.20003 5.20518 5.27797 5.34887 5.44841 5.62811 5.72525 5.83667 5.86031 5.92448 5.95706 6.09542 6.22069 6.22192 6.27712 6.47906 6.58239 6.62645 6.72236 7.03210 7.59665 7.66316 8.26967 8.35445 9.46885 10.03271 10.37837 11.39288 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.002294 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.427020 B =12204.398547 C =12368.430072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.715 5.715 16 C 0.511 3.489 17 O -0.537 6.537 18 C -0.105 4.105 19 C -0.072 4.072 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.094 3.906 23 F -0.143 7.143 24 C -0.152 4.152 25 C -0.076 4.076 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.400 0.600 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -23.416 5.539 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.013 3.987 14 H 0.126 0.874 15 N -0.365 5.365 16 C 0.297 3.703 17 O -0.414 6.414 18 C -0.145 4.145 19 C -0.073 4.073 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.094 4.094 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.234 0.766 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.524 -23.428 5.585 24.090 hybrid contribution -0.236 0.853 0.143 0.897 sum -0.761 -22.575 5.729 23.303 Atomic orbital electron populations 1.69650 1.05151 1.25801 1.57516 1.24768 0.95547 0.97829 1.02749 0.86174 0.78708 0.83673 0.77556 1.21648 1.21752 1.20680 1.19317 0.91159 0.84147 1.42918 0.90986 1.42352 1.05670 0.99770 1.87009 1.21351 0.95486 0.84945 0.92655 0.90252 1.24329 1.01802 0.95181 1.00512 1.22494 0.93271 0.87460 0.95513 0.87366 1.46072 1.10525 1.21435 1.58466 1.20466 0.89654 0.81902 0.78292 1.90722 1.17116 1.75828 1.57704 1.20707 0.97654 0.94040 1.02091 1.19364 0.99381 0.94650 0.93896 1.20851 0.96870 0.92158 0.99590 1.21087 1.01496 1.00732 0.93838 1.17728 0.96761 0.85451 0.92619 1.91491 1.78352 1.55878 1.86423 1.21101 1.01852 0.93305 1.00821 1.20879 0.96228 0.97559 0.94710 1.23865 1.01189 0.97351 0.97452 0.93441 0.78099 0.90221 0.92303 0.76602 0.87752 0.87665 0.85114 0.84783 0.84741 0.85030 0.91538 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.21 5.40 -52.64 -0.28 -17.49 16 10 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 11 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 13 C 0.12 1.68 4.24 -67.11 -0.28 1.40 16 14 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 15 N -0.71 -8.29 5.36 -53.02 -0.28 -8.57 16 16 C 0.51 6.19 7.82 -10.98 -0.09 6.10 16 17 O -0.54 -8.83 15.63 5.56 0.09 -8.74 16 18 C -0.11 -0.84 5.83 -29.04 -0.17 -1.01 16 19 C -0.07 -0.69 4.37 -104.62 -0.46 -1.15 16 20 C -0.08 -0.70 9.70 -39.59 -0.38 -1.08 16 21 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 22 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 24 C -0.15 -1.46 10.03 -39.52 -0.40 -1.86 16 25 C -0.08 -0.72 9.70 -39.59 -0.38 -1.10 16 26 C -0.16 -2.39 7.58 -25.91 -0.20 -2.59 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.38 9.80 7.92 -40.82 -0.32 9.48 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 31 H 0.40 3.61 8.73 -40.82 -0.36 3.25 16 32 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -32.76 341.09 -8.64 -41.40 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.25 Total: 9.56 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.79 Total: -9.97 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.16 Total: -52.92 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.76 -8.64 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023043650.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.844 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds