Wall clock time and date at job start Tue Mar 31 2020 07:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47034 * 270.00182 * 3 2 1 5 5 H 1.48495 * 109.47227 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47074 * 150.00423 * 3 2 1 7 7 C 1.38815 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99888 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.90773 * 336.25150 * 10 9 7 12 12 C 1.53778 * 113.61440 * 107.50760 * 10 9 7 13 13 C 1.53780 * 87.08454 * 139.98212 * 12 10 9 14 14 H 1.08997 * 113.69618 * 89.12089 * 13 12 10 15 15 N 1.46503 * 113.61660 * 220.02238 * 13 12 10 16 16 C 1.34784 * 119.99566 * 252.49657 * 15 13 12 17 17 O 1.21274 * 119.99883 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99605 * 179.97438 * 16 15 13 19 19 C 1.50697 * 109.46835 * 179.97438 * 18 16 15 20 20 C 1.38247 * 119.97529 * 270.01638 * 19 18 16 21 21 C 1.38193 * 120.03115 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.97094 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.02117 * 179.97438 * 22 21 20 24 24 C 1.38457 * 119.94943 * 0.02562 * 22 21 20 25 25 C 1.38194 * 119.97373 * 359.97438 * 24 22 21 26 26 C 1.53785 * 113.61479 * 205.00467 * 10 9 7 27 27 H 0.96994 * 120.00309 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00455 * 0.02562 * 9 7 2 29 29 H 1.09004 * 113.61735 * 25.43100 * 12 10 9 30 30 H 1.09008 * 113.61411 * 254.52635 * 12 10 9 31 31 H 0.96999 * 120.00501 * 72.48824 * 15 13 12 32 32 H 1.09001 * 109.47692 * 59.99314 * 18 16 15 33 33 H 1.09003 * 109.47190 * 299.99595 * 18 16 15 34 34 H 1.08001 * 119.98390 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.01643 * 180.27414 * 21 20 19 36 36 H 1.08004 * 120.00993 * 180.02562 * 24 22 21 37 37 H 1.07998 * 119.98911 * 180.02562 * 25 24 22 38 38 H 1.08996 * 113.61873 * 105.46792 * 26 10 9 39 39 H 1.09002 * 113.61267 * 334.56470 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 -0.4049 12 6 1.9991 -4.4021 1.3432 13 6 1.8481 -5.6976 0.5284 14 1 2.7979 -6.1646 0.2681 15 7 0.8875 -6.6433 1.1023 16 6 1.3253 -7.7707 1.6972 17 8 2.5141 -8.0025 1.7569 18 6 0.3372 -8.7432 2.2880 19 6 1.0784 -9.9107 2.8868 20 6 1.3584 -11.0215 2.1129 21 6 2.0384 -12.0925 2.6608 22 6 2.4390 -12.0530 3.9856 23 9 3.1035 -13.0997 4.5224 24 6 2.1572 -10.9404 4.7601 25 6 1.4770 -9.8706 4.2100 26 6 1.2603 -4.8287 -0.5961 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 1.1208 -4.1570 1.9403 30 1 2.9272 -4.3502 1.9125 31 1 -0.0634 -6.4580 1.0543 32 1 -0.3326 -9.1009 1.5060 33 1 -0.2437 -8.2446 3.0639 34 1 1.0454 -11.0523 1.0797 35 1 2.2609 -12.9583 2.0548 36 1 2.4696 -10.9084 5.7935 37 1 1.2574 -9.0025 4.8137 38 1 1.5918 -5.1211 -1.5924 39 1 0.1800 -4.7002 -0.5292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023043650.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:43 Heat of formation + Delta-G solvation = -51.327960 kcal Electronic energy + Delta-G solvation = -21775.979684 eV Core-core repulsion = 18211.711760 eV Total energy + Delta-G solvation = -3564.267924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.89975 -41.19515 -40.03612 -38.98202 -35.74577 -34.28109 -33.41030 -32.07136 -31.75916 -28.42912 -26.52032 -26.25093 -24.03208 -24.01326 -22.56848 -21.38658 -20.66476 -19.15489 -18.64842 -17.96140 -17.56869 -17.42828 -16.61795 -16.58657 -16.20336 -16.05191 -15.88561 -15.21895 -14.98557 -14.79541 -14.50454 -14.40599 -14.28542 -13.64417 -13.28129 -13.15166 -13.09364 -12.86951 -12.74412 -12.67438 -12.22266 -12.16107 -12.02997 -11.90789 -11.72489 -11.48680 -10.89135 -10.80298 -10.03565 -9.91889 -9.52778 -8.97454 -7.95102 -5.22687 0.13467 0.31132 1.48620 1.49161 1.57682 1.71353 2.24000 2.57006 2.74296 3.30689 3.36782 3.67473 3.72817 3.77512 3.87934 3.98302 3.99138 4.05320 4.27356 4.30843 4.34192 4.34589 4.65717 4.67445 4.76969 4.91474 4.93357 4.99045 5.06596 5.17399 5.17711 5.18447 5.27020 5.42552 5.52393 5.54252 5.72640 5.94501 6.27705 6.68110 7.34394 7.35900 8.10360 8.33817 9.27894 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.002294 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.427020 B =12204.398547 C =12368.430072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.147 3.853 11 H 0.075 0.925 12 C -0.170 4.170 13 C 0.137 3.863 14 H 0.102 0.898 15 N -0.706 5.706 16 C 0.511 3.489 17 O -0.583 6.583 18 C -0.095 4.095 19 C -0.083 4.083 20 C -0.083 4.083 21 C -0.159 4.159 22 C 0.071 3.929 23 F -0.151 7.151 24 C -0.161 4.161 25 C -0.087 4.087 26 C -0.139 4.139 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.416 0.584 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -24.314 5.277 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.361 5.361 10 C 0.037 3.963 11 H 0.093 0.907 12 C -0.212 4.212 13 C 0.031 3.969 14 H 0.120 0.880 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.463 6.463 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.101 4.101 21 C -0.178 4.178 22 C 0.052 3.948 23 F -0.130 7.130 24 C -0.180 4.180 25 C -0.105 4.105 26 C -0.178 4.178 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.253 0.747 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.053 -24.374 5.327 24.971 hybrid contribution -0.021 1.049 0.240 1.076 sum -1.074 -23.325 5.567 24.004 Atomic orbital electron populations 1.69787 1.06433 1.26058 1.59502 1.25519 0.96401 1.00947 1.03795 0.85192 0.77701 0.79770 0.77422 1.21385 1.22230 1.19723 1.19680 0.91502 0.85465 1.41013 0.90783 1.42487 1.05389 1.00732 1.87480 1.21685 0.95683 0.84254 0.94718 0.90691 1.24154 1.01088 0.96588 0.99336 1.22057 0.93692 0.86974 0.94146 0.88008 1.45927 1.10907 1.20856 1.58024 1.21168 0.89698 0.81982 0.77247 1.90714 1.19404 1.76800 1.59407 1.20753 0.96725 0.92475 1.03508 1.19644 0.99450 0.95284 0.94002 1.21162 0.96477 0.91890 1.00555 1.21344 1.01251 1.01539 0.93649 1.18015 0.97636 0.85707 0.93422 1.91463 1.78666 1.56279 1.86614 1.21322 1.01879 0.93269 1.01514 1.21147 0.96161 0.97897 0.95252 1.23658 1.01070 0.94828 0.98261 0.93995 0.79121 0.90840 0.93233 0.74736 0.84488 0.85130 0.83111 0.83326 0.83639 0.83719 0.90140 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.33 9.97 84.04 0.84 -12.49 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -34.99 5.40 -320.45 -1.73 -36.73 16 10 C 0.15 5.49 4.48 45.52 0.20 5.69 16 11 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 12 C -0.17 -5.62 7.68 31.12 0.24 -5.38 16 13 C 0.14 3.67 4.24 45.52 0.19 3.87 16 14 H 0.10 2.96 7.46 -2.39 -0.02 2.94 16 15 N -0.71 -14.38 5.36 -440.03 -2.36 -16.73 16 16 C 0.51 11.02 7.82 87.65 0.69 11.71 16 17 O -0.58 -18.29 15.63 -3.01 -0.05 -18.34 16 18 C -0.10 -1.18 5.83 29.10 0.17 -1.01 16 19 C -0.08 -1.39 4.37 -19.86 -0.09 -1.48 16 20 C -0.08 -1.34 9.70 22.26 0.22 -1.12 16 21 C -0.16 -2.80 10.03 22.31 0.22 -2.57 16 22 C 0.07 1.44 7.30 22.38 0.16 1.61 16 23 F -0.15 -3.31 17.27 44.97 0.78 -2.54 16 24 C -0.16 -2.98 10.03 22.31 0.22 -2.76 16 25 C -0.09 -1.51 9.70 22.26 0.22 -1.29 16 26 C -0.14 -3.90 7.58 31.12 0.24 -3.66 16 27 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.38 19.24 7.92 -92.71 -0.73 18.50 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 30 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.42 6.03 8.73 -92.71 -0.81 5.22 16 32 H 0.14 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.13 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 Total: -1.00 -71.09 341.09 2.48 -68.61 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.46 Total: 28.22 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.99 Total: -12.61 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -3.80 Total: -110.91 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.09 2.48 -68.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023043650.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.286 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds