Wall clock time and date at job start Tue Mar 31 2020 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47180 * 274.98475 * 3 2 1 5 5 H 1.48497 * 109.47099 * 34.98669 * 3 2 1 6 6 H 1.48503 * 109.47190 * 154.98427 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00292 * 187.06196 * 7 2 1 9 9 N 1.36941 * 119.99839 * 7.06534 * 7 2 1 10 10 C 1.47019 * 125.65043 * 354.86943 * 9 7 2 11 11 C 1.54322 * 107.27565 * 178.92356 * 10 9 7 12 12 C 1.55159 * 102.93904 * 337.80778 * 11 10 9 13 13 H 1.09005 * 111.00496 * 277.38837 * 12 11 10 14 14 C 1.52996 * 111.00650 * 153.57599 * 12 11 10 15 15 N 1.46496 * 109.47461 * 174.99982 * 14 12 11 16 16 C 1.34777 * 120.00279 * 180.02562 * 15 14 12 17 17 O 1.21572 * 119.99886 * 0.02562 * 16 15 14 18 18 C 1.47688 * 120.00123 * 179.72382 * 16 15 14 19 19 C 1.39661 * 120.16853 * 359.97438 * 18 16 15 20 20 C 1.37856 * 119.87900 * 179.74380 * 19 18 16 21 21 C 1.38466 * 120.21584 * 0.53213 * 20 19 18 22 22 C 1.38201 * 120.34008 * 359.74471 * 21 20 19 23 23 C 1.38320 * 120.11645 * 359.97385 * 22 21 20 24 24 F 1.35105 * 120.10831 * 180.02562 * 23 22 21 25 25 C 1.47429 * 125.64902 * 174.85084 * 9 7 2 26 26 H 0.96994 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.88194 * 59.50331 * 10 9 7 28 28 H 1.09001 * 109.88280 * 298.34201 * 10 9 7 29 29 H 1.09002 * 110.72162 * 219.45195 * 11 10 9 30 30 H 1.08996 * 110.87696 * 96.23771 * 11 10 9 31 31 H 1.09006 * 109.47219 * 54.99985 * 14 12 11 32 32 H 1.09000 * 109.47075 * 295.00479 * 14 12 11 33 33 H 0.96999 * 120.00036 * 359.97438 * 15 14 12 34 34 H 1.08003 * 120.05765 * 0.02562 * 19 18 16 35 35 H 1.07993 * 119.89058 * 180.25501 * 20 19 18 36 36 H 1.08000 * 119.82818 * 179.76099 * 21 20 19 37 37 H 1.07998 * 119.94115 * 179.97438 * 22 21 20 38 38 H 1.09004 * 110.36577 * 85.30681 * 25 9 7 39 39 H 1.09007 * 110.36412 * 322.98606 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0840 -1.2057 0.1155 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1282 -2.5323 -0.2032 11 6 -0.4287 -4.0332 -0.3994 12 6 0.8919 -4.5754 -1.0072 13 1 0.9277 -4.4008 -2.0826 14 6 1.0725 -6.0610 -0.6896 15 7 2.2638 -6.5660 -1.3766 16 6 2.6221 -7.8584 -1.2424 17 8 1.9564 -8.6052 -0.5517 18 6 3.8197 -8.3689 -1.9399 19 6 4.5831 -7.5157 -2.7397 20 6 5.7028 -7.9973 -3.3838 21 6 6.0666 -9.3265 -3.2491 22 6 5.3144 -10.1800 -2.4645 23 6 4.1916 -9.7102 -1.8073 24 9 3.4567 -10.5447 -1.0399 25 6 1.9494 -3.7172 -0.2691 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5256 -1.9618 -1.0427 28 1 -0.5737 -2.1837 0.7285 29 1 -1.2582 -4.1730 -1.0926 30 1 -0.6401 -4.5150 0.5552 31 1 0.1962 -6.6141 -1.0279 32 1 1.1910 -6.1908 0.3861 33 1 2.7944 -5.9705 -1.9286 34 1 4.2994 -6.4795 -2.8498 35 1 6.2956 -7.3367 -3.9990 36 1 6.9428 -9.6980 -3.7596 37 1 5.6038 -11.2157 -2.3642 38 1 2.1547 -4.1337 0.7172 39 1 2.8666 -3.6583 -0.8553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028376782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:58 Heat of formation + Delta-G solvation = -31.261602 kcal Electronic energy + Delta-G solvation = -22559.360537 eV Core-core repulsion = 18995.962755 eV Total energy + Delta-G solvation = -3563.397781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.01736 -40.16875 -38.58082 -37.57509 -34.73583 -32.70407 -31.68757 -30.81727 -29.72998 -28.26484 -25.71253 -24.41373 -23.45007 -22.62203 -20.82538 -20.00926 -19.85311 -18.33104 -17.30566 -16.75963 -16.72663 -15.95834 -15.64778 -15.49599 -15.08537 -14.75399 -14.64819 -14.40010 -13.77318 -13.41169 -13.37181 -13.13796 -12.55838 -12.38288 -12.35437 -12.04284 -11.79016 -11.68845 -11.38784 -10.91783 -10.82581 -10.43472 -10.17793 -10.04787 -9.91792 -9.77980 -9.69071 -9.54246 -9.13517 -8.94546 -8.59571 -6.85012 -5.74429 -3.06929 0.40129 0.80148 2.65378 3.07638 3.38283 3.43444 3.45112 3.45781 3.89169 4.29587 4.40861 4.47814 4.55677 4.85149 4.85908 5.06601 5.20227 5.32495 5.41115 5.51935 5.61171 5.63591 5.68627 5.76679 5.87284 5.93566 6.02909 6.04577 6.32869 6.37155 6.42905 6.47512 6.52044 6.66143 6.88649 7.45415 7.54044 7.62143 7.80839 8.15032 8.24047 9.19811 9.80481 10.46982 11.37722 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.003166 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.027398 B = 8841.912476 C = 9766.970159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.553 3.447 17 O -0.529 6.529 18 C -0.171 4.171 19 C -0.057 4.057 20 C -0.139 4.139 21 C -0.067 4.067 22 C -0.167 4.167 23 C 0.157 3.843 24 F -0.115 7.115 25 C 0.142 3.858 26 H 0.252 0.748 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.019 0.981 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -17.815 -8.418 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.369 5.369 16 C 0.340 3.660 17 O -0.407 6.407 18 C -0.175 4.175 19 C -0.076 4.076 20 C -0.157 4.157 21 C -0.085 4.085 22 C -0.186 4.186 23 C 0.137 3.863 24 F -0.093 7.093 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.037 0.963 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.360 -18.121 -7.840 21.851 hybrid contribution 0.590 1.104 -0.134 1.259 sum 9.950 -17.017 -7.974 21.264 Atomic orbital electron populations 1.69977 1.04928 1.25067 1.56691 1.24826 0.95698 0.97686 1.02135 0.86123 0.78696 0.83625 0.77483 1.21617 1.21759 1.20634 1.19056 0.91114 0.82584 1.43158 0.90459 1.44489 1.01748 1.00909 1.86136 1.21158 0.84424 0.88395 1.00866 1.22853 0.95216 0.99638 0.99625 1.22624 0.98724 0.91739 1.00689 0.90167 1.21456 0.86383 0.93942 0.97298 1.45963 1.29773 1.10036 1.51124 1.17992 0.84220 0.82469 0.81367 1.90837 1.53733 1.56512 1.39582 1.20164 0.99452 0.93700 1.04141 1.21317 0.93506 0.99416 0.93332 1.21197 0.97446 0.96028 1.01025 1.21226 0.98476 0.93163 0.95680 1.21181 0.95348 1.01832 1.00236 1.17747 0.90454 0.86896 0.91235 1.91603 1.75571 1.70041 1.72118 1.21592 0.94028 0.86667 0.96155 0.93732 0.93382 0.94059 0.91944 0.92149 0.91417 0.91088 0.76399 0.84382 0.84522 0.84529 0.84089 0.96306 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.36 55.49 0.57 -26.29 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.37 10.27 -15.06 -0.15 -6.53 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 9 N -0.61 -15.25 3.39 -170.07 -0.58 -15.83 16 10 C 0.18 4.22 5.38 -3.07 -0.02 4.20 16 11 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 12 C -0.12 -1.92 3.05 -88.47 -0.27 -2.19 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.92 5.13 -4.05 -0.02 1.90 16 15 N -0.72 -9.31 5.45 -61.30 -0.33 -9.65 16 16 C 0.55 8.07 7.77 -12.40 -0.10 7.97 16 17 O -0.53 -9.73 15.34 5.30 0.08 -9.65 16 18 C -0.17 -2.01 5.88 -104.91 -0.62 -2.63 16 19 C -0.06 -0.49 9.54 -39.19 -0.37 -0.86 16 20 C -0.14 -0.93 10.03 -39.64 -0.40 -1.33 16 21 C -0.07 -0.43 10.04 -39.51 -0.40 -0.82 16 22 C -0.17 -1.38 10.01 -39.56 -0.40 -1.77 16 23 C 0.16 1.85 7.29 -38.96 -0.28 1.56 16 24 F -0.12 -1.65 15.55 2.25 0.04 -1.61 16 25 C 0.14 2.80 6.65 -2.53 -0.02 2.79 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 28 H 0.04 1.10 7.61 -51.93 -0.40 0.71 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 33 H 0.40 4.27 6.51 -40.82 -0.27 4.00 16 34 H 0.14 0.94 6.41 -52.48 -0.34 0.60 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 39 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -33.64 328.52 -8.71 -42.35 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.12 Total: -0.51 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.29 Total: -0.59 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.34 Total: -51.77 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.64 -8.71 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028376782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.087 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds