Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.53007 * 114.20496 * 272.48077 * 11 10 9 13 13 N 1.46502 * 109.46729 * 268.59777 * 12 11 10 14 14 C 1.34782 * 119.99467 * 179.97438 * 13 12 11 15 15 O 1.21549 * 120.00322 * 359.97438 * 14 13 12 16 16 C 1.47853 * 119.99565 * 180.02562 * 14 13 12 17 17 C 1.39572 * 120.14220 * 359.71955 * 16 14 13 18 18 C 1.37962 * 119.84788 * 179.74838 * 17 16 14 19 19 C 1.38363 * 120.14583 * 0.53445 * 18 17 16 20 20 C 1.50697 * 119.85217 * 179.71704 * 19 18 17 21 21 F 1.39898 * 109.47467 * 270.02234 * 20 19 18 22 22 C 1.38362 * 120.28973 * 359.74339 * 19 18 17 23 23 C 1.37955 * 120.14478 * 359.97438 * 22 19 18 24 24 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 26 26 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 27 27 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 28 28 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 29 29 H 1.09003 * 109.46769 * 28.59074 * 12 11 10 30 30 H 1.08994 * 109.47332 * 148.59586 * 12 11 10 31 31 H 0.96991 * 120.00330 * 359.97438 * 13 12 11 32 32 H 1.07998 * 120.07908 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.92888 * 180.27585 * 18 17 16 34 34 H 1.08999 * 109.47204 * 30.02871 * 20 19 18 35 35 H 1.09004 * 109.46607 * 150.01803 * 20 19 18 36 36 H 1.08000 * 119.92487 * 179.97438 * 22 19 18 37 37 H 1.08002 * 120.07143 * 180.02562 * 23 22 19 38 38 H 1.09005 * 113.46156 * 321.64040 * 24 9 7 39 39 H 1.08994 * 113.46837 * 92.01680 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 0.3898 -3.9958 -2.2186 13 7 -0.9049 -4.3938 -2.7768 14 6 -1.0946 -4.3856 -4.1112 15 8 -0.1917 -4.0477 -4.8514 16 6 -2.4015 -4.7867 -4.6745 17 6 -3.4388 -5.1798 -3.8275 18 6 -4.6574 -5.5479 -4.3593 19 6 -4.8489 -5.5385 -5.7296 20 6 -6.1807 -5.9479 -6.3038 21 9 -6.1800 -7.3255 -6.5473 22 6 -3.8228 -5.1553 -6.5750 23 6 -2.6012 -4.7794 -6.0558 24 6 1.6797 -3.8155 0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 -0.4897 -2.9528 1.0077 27 1 -0.7251 -2.1596 -0.6083 28 1 -0.1731 -4.9861 -0.3346 29 1 0.6110 -2.9690 -2.5101 30 1 1.1682 -4.6572 -2.5990 31 1 -1.6256 -4.6630 -2.1861 32 1 -3.2894 -5.1916 -2.7580 33 1 -5.4625 -5.8480 -3.7049 34 1 -6.9722 -5.7046 -5.5949 35 1 -6.3531 -5.4137 -7.2382 36 1 -3.9786 -5.1505 -7.6437 37 1 -1.8012 -4.4802 -6.7168 38 1 2.5452 -4.0479 -0.6200 39 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032216533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = -4.757362 kcal Electronic energy + Delta-G solvation = -22198.469015 eV Core-core repulsion = 18636.220544 eV Total energy + Delta-G solvation = -3562.248471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.97329 -40.22126 -38.76367 -37.96261 -34.39018 -32.69965 -32.12670 -31.25004 -28.78383 -27.28172 -25.69227 -24.61467 -22.98213 -22.83956 -22.09940 -20.32139 -19.06636 -17.67446 -16.79059 -16.63492 -16.41693 -16.17291 -15.73846 -15.27263 -15.03546 -14.75428 -14.54942 -14.28026 -13.85490 -13.75869 -13.53603 -13.06069 -12.82205 -12.56969 -12.33417 -11.69252 -11.53738 -11.41811 -11.21974 -11.10853 -10.99241 -10.73867 -10.55515 -9.98438 -9.84037 -9.75718 -9.27758 -9.26178 -9.21726 -8.81211 -8.69488 -6.88886 -5.76776 -3.09020 0.55995 1.10313 2.81187 3.32147 3.41057 3.45024 3.45970 3.71395 4.08265 4.29622 4.46732 4.51710 4.66258 4.68583 4.83800 5.06822 5.22316 5.25601 5.28729 5.30232 5.34615 5.49475 5.59637 5.70194 5.96888 5.99493 6.09174 6.12113 6.16801 6.34588 6.50843 6.55626 6.57456 6.63941 6.78491 7.15850 7.27289 7.54094 7.70514 7.97704 8.37479 9.03919 9.70743 10.63436 11.40690 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002935 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.922591 B = 9537.916061 C = 9794.583212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.158 3.842 11 C -0.162 4.162 12 C 0.150 3.850 13 N -0.714 5.714 14 C 0.551 3.449 15 O -0.537 6.537 16 C -0.115 4.115 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.120 4.120 20 C 0.105 3.895 21 F -0.211 7.211 22 C -0.106 4.106 23 C -0.064 4.064 24 C 0.127 3.873 25 H 0.254 0.746 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.827 -13.547 -9.765 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.335 5.335 10 C 0.033 3.967 11 C -0.182 4.182 12 C 0.028 3.972 13 N -0.365 5.365 14 C 0.337 3.663 15 O -0.415 6.415 16 C -0.118 4.118 17 C -0.106 4.106 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.050 3.950 21 F -0.192 7.192 22 C -0.124 4.124 23 C -0.083 4.083 24 C 0.000 4.000 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.060 0.940 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.102 -12.939 -10.277 20.481 hybrid contribution 0.094 0.770 0.619 0.993 sum -12.008 -12.168 -9.658 19.635 Atomic orbital electron populations 1.69806 1.05007 1.25424 1.56481 1.24780 0.95691 0.97505 1.02405 0.86195 0.78498 0.83101 0.77954 1.20996 1.21561 1.21200 1.18890 0.90133 0.81497 1.44070 0.90168 1.45622 1.02614 0.99280 1.86011 1.22147 0.89159 0.89197 0.96239 1.23272 1.01097 0.99914 0.93938 1.21074 0.82858 1.01645 0.91670 1.45963 1.16525 1.67678 1.06340 1.18205 0.87270 0.78218 0.82570 1.90779 1.43722 1.47895 1.59146 1.20176 0.94368 1.02608 0.94618 1.21369 0.92505 0.96902 0.99864 1.20985 0.97528 0.99470 0.94277 1.20411 0.96272 1.01009 0.94402 1.20838 0.95049 0.77057 1.02030 1.92819 1.97636 1.32789 1.95963 1.21031 0.92521 0.98966 0.99894 1.21308 0.97242 0.95554 0.94160 1.22341 0.94253 0.86877 0.96496 0.93655 0.95733 0.90844 0.91031 0.89634 0.92021 0.76775 0.84989 0.85093 0.89628 0.89678 0.85121 0.84220 0.93972 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 11.51 55.49 0.64 -26.67 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.22 -6.16 10.75 -15.06 -0.16 -6.32 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.47 3.62 -184.77 -0.67 -16.14 16 10 C 0.16 3.58 6.89 -8.51 -0.06 3.52 16 11 C -0.16 -2.85 4.18 -90.11 -0.38 -3.23 16 12 C 0.15 2.69 5.50 -4.04 -0.02 2.66 16 13 N -0.71 -10.77 5.51 -61.24 -0.34 -11.11 16 14 C 0.55 8.94 7.77 -12.32 -0.10 8.84 16 15 O -0.54 -10.76 16.35 5.32 0.09 -10.67 16 16 C -0.11 -1.48 5.87 -104.97 -0.62 -2.09 16 17 C -0.09 -0.90 9.54 -39.19 -0.37 -1.27 16 18 C -0.10 -0.92 9.68 -39.64 -0.38 -1.30 16 19 C -0.12 -1.05 5.60 -104.53 -0.59 -1.64 16 20 C 0.10 0.69 7.67 36.00 0.28 0.96 16 21 F -0.21 -1.99 17.34 2.25 0.04 -1.95 16 22 C -0.11 -1.00 9.68 -39.64 -0.38 -1.38 16 23 C -0.06 -0.75 9.60 -39.19 -0.38 -1.13 16 24 C 0.13 2.54 8.26 -8.52 -0.07 2.47 16 25 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.86 7.10 -51.93 -0.37 1.49 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.91 7.91 -51.93 -0.41 1.50 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 4.78 6.51 -40.82 -0.27 4.51 16 32 H 0.13 1.08 6.41 -52.49 -0.34 0.75 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 38 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -34.21 336.36 -8.65 -42.86 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.13 Total: 1.45 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.32 Total: -0.22 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.37 Total: -53.91 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.21 -8.65 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032216533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.099 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds