Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.53007 * 114.20496 * 272.48077 * 11 10 9 13 13 N 1.46502 * 109.46729 * 268.59777 * 12 11 10 14 14 C 1.34782 * 119.99467 * 179.97438 * 13 12 11 15 15 O 1.21549 * 120.00322 * 359.97438 * 14 13 12 16 16 C 1.47853 * 119.99565 * 180.02562 * 14 13 12 17 17 C 1.39572 * 120.14220 * 359.71955 * 16 14 13 18 18 C 1.37962 * 119.84788 * 179.74838 * 17 16 14 19 19 C 1.38363 * 120.14583 * 0.53445 * 18 17 16 20 20 C 1.50697 * 119.85217 * 179.71704 * 19 18 17 21 21 F 1.39898 * 109.47467 * 270.02234 * 20 19 18 22 22 C 1.38362 * 120.28973 * 359.74339 * 19 18 17 23 23 C 1.37955 * 120.14478 * 359.97438 * 22 19 18 24 24 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 26 26 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 27 27 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 28 28 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 29 29 H 1.09003 * 109.46769 * 28.59074 * 12 11 10 30 30 H 1.08994 * 109.47332 * 148.59586 * 12 11 10 31 31 H 0.96991 * 120.00330 * 359.97438 * 13 12 11 32 32 H 1.07998 * 120.07908 * 0.02562 * 17 16 14 33 33 H 1.08004 * 119.92888 * 180.27585 * 18 17 16 34 34 H 1.08999 * 109.47204 * 30.02871 * 20 19 18 35 35 H 1.09004 * 109.46607 * 150.01803 * 20 19 18 36 36 H 1.08000 * 119.92487 * 179.97438 * 22 19 18 37 37 H 1.08002 * 120.07143 * 180.02562 * 23 22 19 38 38 H 1.09005 * 113.46156 * 321.64040 * 24 9 7 39 39 H 1.08994 * 113.46837 * 92.01680 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 0.3898 -3.9958 -2.2186 13 7 -0.9049 -4.3938 -2.7768 14 6 -1.0946 -4.3856 -4.1112 15 8 -0.1917 -4.0477 -4.8514 16 6 -2.4015 -4.7867 -4.6745 17 6 -3.4388 -5.1798 -3.8275 18 6 -4.6574 -5.5479 -4.3593 19 6 -4.8489 -5.5385 -5.7296 20 6 -6.1807 -5.9479 -6.3038 21 9 -6.1800 -7.3255 -6.5473 22 6 -3.8228 -5.1553 -6.5750 23 6 -2.6012 -4.7794 -6.0558 24 6 1.6797 -3.8155 0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 -0.4897 -2.9528 1.0077 27 1 -0.7251 -2.1596 -0.6083 28 1 -0.1731 -4.9861 -0.3346 29 1 0.6110 -2.9690 -2.5101 30 1 1.1682 -4.6572 -2.5990 31 1 -1.6256 -4.6630 -2.1861 32 1 -3.2894 -5.1916 -2.7580 33 1 -5.4625 -5.8480 -3.7049 34 1 -6.9722 -5.7046 -5.5949 35 1 -6.3531 -5.4137 -7.2382 36 1 -3.9786 -5.1505 -7.6437 37 1 -1.8012 -4.4802 -6.7168 38 1 2.5452 -4.0479 -0.6200 39 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032216533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = -27.069322 kcal Electronic energy + Delta-G solvation = -22199.436534 eV Core-core repulsion = 18636.220544 eV Total energy + Delta-G solvation = -3563.215991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.57292 -41.34392 -40.13485 -39.25621 -35.83189 -34.27181 -33.40607 -32.04706 -30.45017 -28.47352 -27.04387 -26.32937 -24.43239 -23.74932 -23.26504 -21.48756 -20.54188 -18.96709 -18.58892 -17.57905 -17.20990 -16.98094 -16.76160 -16.73210 -16.46284 -16.08188 -15.71506 -15.45288 -15.30219 -14.87706 -14.55238 -14.39215 -14.18894 -13.92758 -13.48485 -13.36861 -12.96085 -12.81412 -12.57825 -12.34374 -12.26077 -12.09326 -11.83914 -11.80951 -11.64170 -11.18508 -11.00580 -10.85696 -10.26108 -10.02180 -9.90973 -8.90728 -7.91493 -5.23166 -0.30810 0.34504 1.42827 1.46503 1.51957 1.74539 2.09270 2.46608 2.77498 3.30526 3.42115 3.51385 3.63421 3.70331 3.77927 3.91679 3.96681 4.14364 4.15358 4.37449 4.50937 4.54035 4.60948 4.67092 4.77597 4.83835 4.87917 4.97203 4.98950 5.06592 5.19905 5.24088 5.30606 5.36163 5.40133 5.53151 5.62038 5.81807 5.95391 6.50048 6.91487 7.14851 7.60473 8.61183 9.25738 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002935 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.922591 B = 9537.916061 C = 9794.583212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.229 4.229 8 H 0.082 0.918 9 N -0.645 5.645 10 C 0.155 3.845 11 C -0.125 4.125 12 C 0.161 3.839 13 N -0.703 5.703 14 C 0.547 3.453 15 O -0.587 6.587 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.103 4.103 19 C -0.116 4.116 20 C 0.102 3.898 21 F -0.227 7.227 22 C -0.107 4.107 23 C -0.081 4.081 24 C 0.125 3.875 25 H 0.247 0.753 26 H 0.026 0.974 27 H 0.037 0.963 28 H 0.123 0.877 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.414 0.586 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.049 0.951 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.499 -15.309 -9.510 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.357 4.357 8 H 0.100 0.900 9 N -0.372 5.372 10 C 0.029 3.971 11 C -0.144 4.144 12 C 0.037 3.963 13 N -0.355 5.355 14 C 0.336 3.664 15 O -0.469 6.469 16 C -0.143 4.143 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.047 3.953 21 F -0.208 7.208 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.001 4.001 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.785 -14.751 -9.995 22.528 hybrid contribution 0.568 1.244 0.503 1.457 sum -13.217 -13.506 -9.492 21.147 Atomic orbital electron populations 1.69988 1.06277 1.25480 1.58195 1.25590 0.96606 1.00715 1.03174 0.85199 0.77232 0.79036 0.78182 1.20664 1.21952 1.20091 1.19269 0.90655 0.83118 1.42654 0.90038 1.45987 1.04245 1.00711 1.86209 1.22140 0.87653 0.91090 0.96175 1.23005 0.99394 0.99206 0.92789 1.20745 0.84569 0.98817 0.92198 1.45779 1.16078 1.67170 1.06471 1.18814 0.88121 0.77057 0.82406 1.90742 1.45670 1.50250 1.60246 1.19999 0.93463 1.05446 0.95415 1.21595 0.92261 0.96088 1.00540 1.21390 0.97587 0.98236 0.94883 1.20804 0.97044 0.99323 0.94533 1.21099 0.94195 0.76080 1.03879 1.92790 1.97625 1.34279 1.96137 1.21290 0.91618 0.98182 1.01355 1.21352 0.98190 0.96643 0.93832 1.22575 0.95689 0.83827 0.97971 0.94429 0.95661 0.94413 0.85897 0.94923 0.91263 0.74754 0.83100 0.81963 0.86986 0.87491 0.82852 0.85658 0.93271 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 11.51 21.65 0.25 -57.92 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.23 -13.11 10.75 84.03 0.90 -12.20 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.64 -33.01 3.62 -738.50 -2.67 -35.68 16 10 C 0.16 7.03 6.89 83.18 0.57 7.61 16 11 C -0.12 -4.16 4.18 -10.46 -0.04 -4.21 16 12 C 0.16 5.77 5.50 86.38 0.47 6.24 16 13 N -0.70 -21.01 5.51 -465.95 -2.57 -23.57 16 14 C 0.55 18.24 7.77 86.79 0.67 18.92 16 15 O -0.59 -24.87 16.35 -3.87 -0.06 -24.93 16 16 C -0.14 -3.60 5.87 -20.09 -0.12 -3.72 16 17 C -0.09 -1.59 9.54 22.53 0.21 -1.38 16 18 C -0.10 -1.48 9.68 22.23 0.22 -1.27 16 19 C -0.12 -1.70 5.60 -19.81 -0.11 -1.81 16 20 C 0.10 0.95 7.67 71.23 0.55 1.50 16 21 F -0.23 -3.61 17.34 44.97 0.78 -2.83 16 22 C -0.11 -1.84 9.68 22.23 0.22 -1.62 16 23 C -0.08 -1.94 9.60 22.52 0.22 -1.72 16 24 C 0.12 4.78 8.26 83.17 0.69 5.46 16 25 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.04 1.97 7.10 -2.39 -0.02 1.95 16 28 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.03 1.53 7.91 -2.39 -0.02 1.51 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.41 9.26 6.51 -92.72 -0.60 8.66 16 32 H 0.15 2.06 6.41 -2.91 -0.02 2.05 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.11 0.50 8.08 -2.39 -0.02 0.48 16 35 H 0.11 0.57 8.08 -2.38 -0.02 0.55 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.13 3.24 7.65 -2.91 -0.02 3.22 16 38 H 0.05 1.81 8.12 -2.38 -0.02 1.79 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.41 336.36 3.13 -75.28 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.46 Total: 12.31 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.91 Total: 8.31 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -4.99 Total: -117.17 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -78.41 3.13 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032216533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.210 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds