Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48507 * 109.46828 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47187 * 120.00100 * 3 2 1 7 7 C 1.38807 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00560 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.48263 * 126.38860 * 359.97438 * 9 7 2 11 11 C 1.55290 * 106.98878 * 184.94156 * 10 9 7 12 12 C 1.53741 * 101.87962 * 22.48621 * 11 10 9 13 13 H 1.09000 * 111.30675 * 79.82399 * 12 11 10 14 14 C 1.52241 * 114.74486 * 207.22492 * 12 11 10 15 15 N 1.47712 * 106.36692 * 169.57927 * 14 12 11 16 16 C 1.34778 * 119.68876 * 127.93741 * 15 14 12 17 17 O 1.21500 * 120.00175 * 175.65754 * 16 15 14 18 18 C 1.48282 * 119.99471 * 355.66005 * 16 15 14 19 19 C 1.47488 * 128.70683 * 186.32844 * 18 16 15 20 20 N 1.30656 * 102.71169 * 179.85010 * 19 18 16 21 21 O 1.20837 * 109.62110 * 0.42488 * 20 19 18 22 22 N 1.20904 * 115.90429 * 359.69593 * 21 20 19 23 23 C 1.46601 * 120.63046 * 307.96022 * 15 14 12 24 24 C 1.53957 * 110.57512 * 47.80309 * 23 15 14 25 25 C 1.45458 * 126.40962 * 179.97438 * 9 7 2 26 26 H 1.08998 * 108.77477 * 265.96048 * 25 9 7 27 27 H 0.97002 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.95299 * 65.59988 * 10 9 7 29 29 H 1.09005 * 109.93148 * 304.26188 * 10 9 7 30 30 H 1.09000 * 110.95417 * 264.32582 * 11 10 9 31 31 H 1.09004 * 110.95220 * 140.64361 * 11 10 9 32 32 H 1.09003 * 110.06435 * 288.78663 * 14 12 11 33 33 H 1.08999 * 110.06638 * 50.36161 * 14 12 11 34 34 H 1.08002 * 128.64669 * 359.97438 * 19 18 16 35 35 H 1.08998 * 109.25674 * 168.08707 * 23 15 14 36 36 H 1.09004 * 109.25334 * 287.52048 * 23 15 14 37 37 H 1.09004 * 109.87915 * 68.40878 * 24 23 15 38 38 H 1.09001 * 109.88172 * 189.48386 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1478 -2.5531 0.0005 11 6 -0.4340 -4.0740 0.1285 12 6 0.8683 -4.5889 0.7628 13 1 0.8850 -4.4057 1.8371 14 6 1.2009 -6.0404 0.4463 15 7 2.5823 -6.2636 0.9193 16 6 2.8488 -7.3023 1.7358 17 8 3.9944 -7.5381 2.0648 18 6 1.7437 -8.1572 2.2325 19 6 1.7962 -9.2502 3.2213 20 7 0.5523 -9.6458 3.2789 21 8 -0.1185 -8.9872 2.5197 22 7 0.4713 -8.1346 1.8976 23 6 3.6664 -5.3658 0.5094 24 6 3.2472 -3.8951 0.6870 25 6 1.9078 -3.7211 0.0005 26 1 1.9815 -4.0716 -1.0289 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5646 -2.1739 -0.9325 29 1 -0.5813 -2.0212 0.8475 30 1 -0.5951 -4.5241 -0.8511 31 1 -1.2857 -4.2566 0.7839 32 1 0.5140 -6.7045 0.9712 33 1 1.1411 -6.2121 -0.6284 34 1 2.6499 -9.6281 3.7643 35 1 4.5477 -5.5645 1.1192 36 1 3.9065 -5.5472 -0.5383 37 1 3.1536 -3.6618 1.7477 38 1 3.9872 -3.2405 0.2265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036847486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = 113.275418 kcal Electronic energy + Delta-G solvation = -23972.965252 eV Core-core repulsion = 20435.755028 eV Total energy + Delta-G solvation = -3537.210224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.96204 -41.63274 -39.84257 -36.96900 -35.89051 -35.57096 -34.45191 -33.25123 -31.39047 -29.72390 -27.63271 -26.48974 -25.48865 -24.50921 -23.70227 -22.02595 -21.48877 -20.79504 -20.08322 -19.28043 -18.68263 -18.27094 -17.27220 -16.89857 -16.60146 -16.07066 -15.80939 -15.68952 -15.13195 -14.84787 -14.61323 -14.28586 -13.91994 -13.86979 -13.59235 -13.25270 -13.12902 -12.74466 -12.66869 -12.45218 -12.26810 -12.12734 -12.02314 -11.88202 -11.82897 -11.60764 -11.53127 -11.50096 -10.89049 -10.69661 -9.93145 -8.87272 -7.83365 -5.17622 -0.38979 0.33132 1.36517 1.46074 1.48430 1.54459 1.74026 2.24824 2.44396 2.50739 2.78374 3.32776 3.35993 3.42974 3.72150 3.81598 3.93451 3.96369 4.17123 4.23655 4.34645 4.44832 4.46039 4.63697 4.69543 4.78277 4.81892 4.91466 4.96856 5.08981 5.15123 5.37575 5.49539 5.52193 5.66493 5.77699 6.01113 6.21117 6.66673 7.09921 7.37493 7.79926 8.47931 9.28055 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028336 B = 0.004155 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.907747 B = 6737.069934 C = 7396.433044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.233 4.233 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.180 3.820 11 C -0.119 4.119 12 C -0.108 4.108 13 H 0.064 0.936 14 C 0.101 3.899 15 N -0.588 5.588 16 C 0.601 3.399 17 O -0.543 6.543 18 C -0.049 4.049 19 C 0.055 3.945 20 N -0.359 5.359 21 O 0.339 5.661 22 N -0.318 5.318 23 C 0.126 3.874 24 C -0.121 4.121 25 C 0.156 3.844 26 H 0.025 0.975 27 H 0.245 0.755 28 H 0.005 0.995 29 H 0.017 0.983 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.257 0.743 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -19.044 3.451 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.056 3.944 11 C -0.157 4.157 12 C -0.129 4.129 13 H 0.082 0.918 14 C -0.021 4.021 15 N -0.320 5.320 16 C 0.386 3.614 17 O -0.419 6.419 18 C -0.214 4.214 19 C -0.130 4.130 20 N -0.084 5.084 21 O 0.115 5.885 22 N -0.040 5.040 23 C 0.004 3.996 24 C -0.160 4.160 25 C 0.049 3.951 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.273 0.727 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.104 -19.058 3.431 19.478 hybrid contribution 1.026 1.767 0.049 2.044 sum 3.130 -17.291 3.480 17.913 Atomic orbital electron populations 1.70148 1.06258 1.25154 1.58599 1.25583 0.96504 1.00841 1.03048 0.85236 0.77177 0.79268 0.78175 1.20309 1.22343 1.20471 1.19358 0.90982 0.83524 1.42332 0.89728 1.44516 1.02342 1.00743 1.86499 1.21348 0.83532 0.91904 0.97660 1.22575 0.96725 0.95234 1.01194 1.22450 0.96653 0.94518 0.99232 0.91795 1.22579 0.81161 0.96550 1.01782 1.48235 1.11067 1.26552 1.46106 1.16788 0.85841 0.80130 0.78601 1.90803 1.20603 1.71191 1.59352 1.26147 0.91711 1.01622 1.01874 1.28192 0.96293 0.92005 0.96537 1.75103 1.05661 1.16515 1.11074 1.85121 1.35540 1.31081 1.36736 1.75165 1.06992 1.07459 1.14389 1.21689 0.88962 0.87167 1.01769 1.21794 0.98038 0.95548 1.00624 1.20909 0.93003 0.85333 0.95888 0.95709 0.94581 0.97669 0.96490 0.90056 0.90020 0.85219 0.89034 0.72672 0.88457 0.89400 0.92918 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.09 10.44 21.65 0.23 -56.86 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 3 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.23 -12.70 9.88 84.03 0.83 -11.87 16 8 H 0.08 4.36 7.21 -2.91 -0.02 4.34 16 9 N -0.62 -30.59 3.35 -669.63 -2.24 -32.83 16 10 C 0.18 8.70 5.45 86.83 0.47 9.18 16 11 C -0.12 -4.06 6.53 31.63 0.21 -3.85 16 12 C -0.11 -3.50 2.86 -9.97 -0.03 -3.52 16 13 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.10 2.53 5.84 85.90 0.50 3.03 16 15 N -0.59 -15.13 3.00 -820.93 -2.46 -17.59 16 16 C 0.60 15.15 7.69 86.92 0.67 15.82 16 17 O -0.54 -15.65 16.40 -3.71 -0.06 -15.71 16 18 C -0.05 -1.02 7.24 44.29 0.32 -0.70 16 19 C 0.06 0.85 12.63 87.31 1.10 1.95 16 20 N -0.36 -6.22 12.22 -61.38 -0.75 -6.97 16 21 O 0.34 6.25 11.65 140.85 1.64 7.89 16 22 N -0.32 -6.46 8.80 -52.04 -0.46 -6.92 16 23 C 0.13 3.28 6.31 86.68 0.55 3.83 16 24 C -0.12 -3.98 5.48 30.43 0.17 -3.82 16 25 C 0.16 5.92 2.55 45.52 0.12 6.03 16 26 H 0.03 0.96 7.95 -2.39 -0.02 0.94 16 27 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.01 0.27 7.77 -2.39 -0.02 0.26 16 29 H 0.02 0.93 7.21 -2.38 -0.02 0.91 16 30 H 0.08 2.45 8.11 -2.39 -0.02 2.44 16 31 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.13 2.99 3.83 -38.42 -0.15 2.85 16 33 H 0.09 2.08 8.08 -2.39 -0.02 2.06 16 34 H 0.26 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.10 2.48 6.99 -2.39 -0.02 2.47 16 36 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 38 H 0.08 2.56 7.62 -2.39 -0.02 2.54 16 Total: -1.00 -66.92 308.40 4.24 -62.68 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.95 Total: 6.02 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.37 Total: 12.76 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.69 Total: -121.17 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 1.58 Total: -7.82 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.92 4.24 -62.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036847486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.951 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds