Wall clock time and date at job start Tue Mar 31 2020 07:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99470 * 2 1 4 4 H 1.48501 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47134 * 299.99947 * 3 2 1 6 6 H 1.48501 * 109.47223 * 59.99818 * 3 2 1 7 7 C 1.38809 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.47064 * 136.05496 * 359.95106 * 9 7 2 11 11 C 1.53496 * 87.98324 * 207.15013 * 10 9 7 12 12 C 1.47064 * 136.05764 * 180.02562 * 9 7 2 13 13 H 1.09007 * 113.46452 * 267.68270 * 12 9 7 14 14 C 1.52993 * 113.46665 * 38.06351 * 12 9 7 15 15 N 1.46506 * 109.47556 * 285.49487 * 14 12 9 16 16 C 1.34777 * 120.00268 * 180.02562 * 15 14 12 17 17 O 1.21552 * 119.99899 * 0.27240 * 16 15 14 18 18 C 1.47846 * 119.99810 * 180.02562 * 16 15 14 19 19 C 1.39574 * 120.14263 * 359.72495 * 18 16 15 20 20 C 1.37965 * 119.84583 * 179.72432 * 19 18 16 21 21 C 1.38361 * 120.14656 * 0.52931 * 20 19 18 22 22 C 1.50696 * 119.85112 * 179.74636 * 21 20 19 23 23 F 1.39900 * 109.47073 * 270.01772 * 22 21 20 24 24 C 1.38352 * 120.29259 * 359.76252 * 21 20 19 25 25 C 1.37966 * 120.14854 * 359.96055 * 24 21 20 26 26 H 0.96998 * 120.00750 * 0.02562 * 1 2 3 27 27 H 1.08995 * 113.47343 * 321.93738 * 10 9 7 28 28 H 1.09004 * 113.46512 * 92.31731 * 10 9 7 29 29 H 1.09000 * 114.20668 * 220.34017 * 11 10 9 30 30 H 1.09002 * 114.19931 * 87.52522 * 11 10 9 31 31 H 1.09004 * 109.46862 * 165.49683 * 14 12 9 32 32 H 1.08992 * 109.47399 * 45.49981 * 14 12 9 33 33 H 0.96999 * 119.99689 * 0.02562 * 15 14 12 34 34 H 1.07989 * 120.07782 * 359.97438 * 19 18 16 35 35 H 1.08001 * 119.92434 * 180.27174 * 20 19 18 36 36 H 1.09003 * 109.47584 * 30.01915 * 22 21 20 37 37 H 1.09007 * 109.46971 * 150.02093 * 22 21 20 38 38 H 1.08004 * 119.92940 * 179.97438 * 24 21 20 39 39 H 1.07999 * 120.07558 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.0876 -2.7949 0.0033 11 6 0.3427 -4.0915 0.7031 12 6 1.6801 -3.8154 0.0029 13 1 1.7455 -4.2472 -0.9959 14 6 2.8993 -4.1396 0.8684 15 7 4.1157 -3.6898 0.1869 16 6 5.3192 -3.8724 0.7655 17 8 5.3957 -4.4148 1.8506 18 6 6.5466 -3.4179 0.0779 19 6 6.4629 -2.8046 -1.1730 20 6 7.6117 -2.3778 -1.8066 21 6 8.8456 -2.5664 -1.2096 22 6 10.0966 -2.1027 -1.9102 23 9 10.5890 -3.1343 -2.7167 24 6 8.9359 -3.1791 0.0275 25 6 7.7944 -3.6055 0.6745 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7218 -2.1584 0.6202 28 1 -0.4946 -2.9540 -0.9953 29 1 -0.1726 -4.9836 0.3473 30 1 0.3844 -4.0200 1.7900 31 1 2.9520 -5.2158 1.0332 32 1 2.8103 -3.6292 1.8273 33 1 4.0549 -3.2605 -0.6808 34 1 5.5009 -2.6609 -1.6421 35 1 7.5481 -1.8991 -2.7727 36 1 9.8662 -1.2357 -2.5295 37 1 10.8483 -1.8304 -1.1692 38 1 9.9021 -3.3237 0.4880 39 1 7.8662 -4.0833 1.6404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039067727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:06 Heat of formation + Delta-G solvation = -6.303671 kcal Electronic energy + Delta-G solvation = -22671.699603 eV Core-core repulsion = 19109.384079 eV Total energy + Delta-G solvation = -3562.315524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.90050 -40.12123 -38.66323 -37.88830 -34.22099 -32.58532 -32.22113 -31.15622 -28.35535 -27.92411 -26.50536 -23.51854 -22.90877 -22.84230 -21.67729 -20.21685 -19.30418 -18.03589 -16.73645 -16.50272 -16.34628 -16.09733 -15.59993 -15.35519 -14.98426 -14.61656 -14.41250 -14.22143 -13.86181 -13.66584 -13.36844 -13.14414 -12.86173 -12.55648 -11.90992 -11.59477 -11.56491 -11.34168 -11.16933 -11.11459 -11.01902 -10.82193 -10.59973 -10.05982 -9.86728 -9.75523 -9.27361 -9.16722 -9.12523 -8.86507 -8.59864 -6.94863 -5.81871 -3.14735 0.65611 1.20570 2.89752 3.33548 3.38734 3.41805 3.44641 3.80721 4.17159 4.38340 4.38619 4.59647 4.77181 4.78749 4.92657 5.15809 5.18704 5.33046 5.35345 5.37341 5.52771 5.57703 5.69299 5.80402 5.87165 6.04324 6.10075 6.20272 6.23012 6.29990 6.37137 6.55719 6.65223 6.67651 6.82861 7.18272 7.35071 7.53496 7.81631 7.92515 8.45840 8.97696 9.65186 10.57827 11.35281 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004275 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.376852 B = 6548.828489 C = 7768.181179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.706 5.706 16 C 0.551 3.449 17 O -0.547 6.547 18 C -0.116 4.116 19 C -0.085 4.085 20 C -0.104 4.104 21 C -0.120 4.120 22 C 0.105 3.895 23 F -0.211 7.211 24 C -0.108 4.108 25 C -0.064 4.064 26 H 0.253 0.747 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.739 -6.336 -3.502 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.356 5.356 16 C 0.338 3.662 17 O -0.426 6.426 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.121 4.121 22 C 0.051 3.949 23 F -0.192 7.192 24 C -0.126 4.126 25 C -0.083 4.083 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.801 -6.362 -2.750 16.344 hybrid contribution 0.335 1.220 -0.615 1.407 sum 15.136 -5.142 -3.365 16.336 Atomic orbital electron populations 1.69833 1.04972 1.25213 1.56348 1.24769 0.95628 0.97414 1.02471 0.86125 0.78763 0.84017 0.77346 1.20473 1.21728 1.21658 1.18878 0.89990 0.81343 1.44014 0.90208 1.45682 1.02646 0.98536 1.85914 1.22028 0.88672 0.90200 0.96519 1.23654 0.96806 0.99084 1.00410 1.22426 0.92037 0.87826 0.95866 0.93404 1.21861 0.82877 0.98365 0.97249 1.45915 1.05894 1.60392 1.23368 1.18227 0.83481 0.79286 0.85231 1.90737 1.87105 1.43878 1.20906 1.20177 0.94256 1.01746 0.95697 1.21430 0.99188 0.95843 0.93901 1.21000 0.91473 0.99683 1.00026 1.20395 0.95189 1.00590 0.95923 1.20837 0.93237 0.87764 0.93102 1.92816 1.88965 1.62063 1.75399 1.21003 0.98751 0.98297 0.94541 1.21275 0.90672 0.96551 0.99840 0.93691 0.90969 0.95696 0.92281 0.90158 0.92049 0.90884 0.76158 0.84873 0.85074 0.89625 0.89714 0.85196 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 11.51 55.49 0.64 -25.92 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -5.65 10.55 -15.06 -0.16 -5.81 16 8 H 0.08 2.02 7.50 -52.49 -0.39 1.62 16 9 N -0.60 -14.38 3.65 -177.02 -0.65 -15.02 16 10 C 0.15 3.40 7.39 -8.51 -0.06 3.34 16 11 C -0.16 -2.87 8.03 -26.23 -0.21 -3.08 16 12 C 0.13 2.38 4.10 -72.41 -0.30 2.08 16 13 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 14 C 0.12 2.17 5.52 -4.04 -0.02 2.15 16 15 N -0.71 -12.08 5.28 -61.25 -0.32 -12.40 16 16 C 0.55 9.62 7.77 -12.33 -0.10 9.53 16 17 O -0.55 -11.06 16.35 5.32 0.09 -10.98 16 18 C -0.12 -1.69 5.87 -104.97 -0.62 -2.31 16 19 C -0.08 -1.09 9.54 -39.18 -0.37 -1.46 16 20 C -0.10 -1.14 9.68 -39.64 -0.38 -1.52 16 21 C -0.12 -1.24 5.60 -104.54 -0.59 -1.83 16 22 C 0.11 0.83 7.67 36.00 0.28 1.11 16 23 F -0.21 -2.24 17.34 2.25 0.04 -2.20 16 24 C -0.11 -1.15 9.68 -39.64 -0.38 -1.53 16 25 C -0.06 -0.84 9.60 -39.18 -0.38 -1.21 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 6.48 6.41 -40.82 -0.26 6.22 16 34 H 0.13 1.59 6.40 -52.49 -0.34 1.26 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.14 1.76 7.65 -52.49 -0.40 1.36 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -32.26 336.03 -8.67 -40.93 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.12 Total: 4.68 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.39 Total: -0.80 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.33 Total: -53.34 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.26 -8.67 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039067727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.623 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds