Wall clock time and date at job start Tue Mar 31 2020 07:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99470 * 2 1 4 4 H 1.48501 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47134 * 299.99947 * 3 2 1 6 6 H 1.48501 * 109.47223 * 59.99818 * 3 2 1 7 7 C 1.38809 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.47064 * 136.05496 * 359.95106 * 9 7 2 11 11 C 1.53496 * 87.98324 * 207.15013 * 10 9 7 12 12 C 1.47064 * 136.05764 * 180.02562 * 9 7 2 13 13 H 1.09007 * 113.46452 * 267.68270 * 12 9 7 14 14 C 1.52993 * 113.46665 * 38.06351 * 12 9 7 15 15 N 1.46506 * 109.47556 * 285.49487 * 14 12 9 16 16 C 1.34777 * 120.00268 * 180.02562 * 15 14 12 17 17 O 1.21552 * 119.99899 * 0.27240 * 16 15 14 18 18 C 1.47846 * 119.99810 * 180.02562 * 16 15 14 19 19 C 1.39574 * 120.14263 * 359.72495 * 18 16 15 20 20 C 1.37965 * 119.84583 * 179.72432 * 19 18 16 21 21 C 1.38361 * 120.14656 * 0.52931 * 20 19 18 22 22 C 1.50696 * 119.85112 * 179.74636 * 21 20 19 23 23 F 1.39900 * 109.47073 * 270.01772 * 22 21 20 24 24 C 1.38352 * 120.29259 * 359.76252 * 21 20 19 25 25 C 1.37966 * 120.14854 * 359.96055 * 24 21 20 26 26 H 0.96998 * 120.00750 * 0.02562 * 1 2 3 27 27 H 1.08995 * 113.47343 * 321.93738 * 10 9 7 28 28 H 1.09004 * 113.46512 * 92.31731 * 10 9 7 29 29 H 1.09000 * 114.20668 * 220.34017 * 11 10 9 30 30 H 1.09002 * 114.19931 * 87.52522 * 11 10 9 31 31 H 1.09004 * 109.46862 * 165.49683 * 14 12 9 32 32 H 1.08992 * 109.47399 * 45.49981 * 14 12 9 33 33 H 0.96999 * 119.99689 * 0.02562 * 15 14 12 34 34 H 1.07989 * 120.07782 * 359.97438 * 19 18 16 35 35 H 1.08001 * 119.92434 * 180.27174 * 20 19 18 36 36 H 1.09003 * 109.47584 * 30.01915 * 22 21 20 37 37 H 1.09007 * 109.46971 * 150.02093 * 22 21 20 38 38 H 1.08004 * 119.92940 * 179.97438 * 24 21 20 39 39 H 1.07999 * 120.07558 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.0876 -2.7949 0.0033 11 6 0.3427 -4.0915 0.7031 12 6 1.6801 -3.8154 0.0029 13 1 1.7455 -4.2472 -0.9959 14 6 2.8993 -4.1396 0.8684 15 7 4.1157 -3.6898 0.1869 16 6 5.3192 -3.8724 0.7655 17 8 5.3957 -4.4148 1.8506 18 6 6.5466 -3.4179 0.0779 19 6 6.4629 -2.8046 -1.1730 20 6 7.6117 -2.3778 -1.8066 21 6 8.8456 -2.5664 -1.2096 22 6 10.0966 -2.1027 -1.9102 23 9 10.5890 -3.1343 -2.7167 24 6 8.9359 -3.1791 0.0275 25 6 7.7944 -3.6055 0.6745 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7218 -2.1584 0.6202 28 1 -0.4946 -2.9540 -0.9953 29 1 -0.1726 -4.9836 0.3473 30 1 0.3844 -4.0200 1.7900 31 1 2.9520 -5.2158 1.0332 32 1 2.8103 -3.6292 1.8273 33 1 4.0549 -3.2605 -0.6808 34 1 5.5009 -2.6609 -1.6421 35 1 7.5481 -1.8991 -2.7727 36 1 9.8662 -1.2357 -2.5295 37 1 10.8483 -1.8304 -1.1692 38 1 9.9021 -3.3237 0.4880 39 1 7.8662 -4.0833 1.6404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039067727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:06 Heat of formation + Delta-G solvation = -26.202370 kcal Electronic energy + Delta-G solvation = -22672.562476 eV Core-core repulsion = 19109.384079 eV Total energy + Delta-G solvation = -3563.178397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.59760 -41.32450 -40.05486 -39.24392 -35.67080 -34.27323 -33.44574 -32.06960 -30.01151 -29.48619 -27.50172 -25.40222 -24.12975 -23.78390 -22.97844 -21.48047 -20.94531 -19.33825 -18.37845 -17.52433 -17.23633 -17.12316 -16.78556 -16.65268 -16.27875 -16.06523 -15.71251 -15.37927 -15.31690 -14.87428 -14.71526 -14.44051 -13.96108 -13.76563 -13.49175 -13.28931 -12.99525 -12.72127 -12.60546 -12.33017 -12.29476 -12.11333 -11.86065 -11.84020 -11.63119 -11.31184 -10.91287 -10.82315 -10.24124 -10.05488 -9.90867 -8.89762 -7.87884 -5.19737 -0.33084 0.31095 1.42892 1.44856 1.53232 1.73569 2.13539 2.46546 2.75156 3.34003 3.38404 3.45230 3.67188 3.73041 3.89343 3.93545 4.07388 4.11966 4.16120 4.32727 4.34033 4.51594 4.61448 4.63872 4.69060 4.81254 4.86881 4.95384 5.05137 5.07620 5.17651 5.27257 5.32054 5.36073 5.40129 5.58660 5.73485 5.78968 5.96688 6.47213 6.93415 7.11290 7.63754 8.63339 9.29837 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004275 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.376852 B = 6548.828489 C = 7768.181179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.206 4.206 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.071 0.929 14 C 0.129 3.871 15 N -0.705 5.705 16 C 0.549 3.451 17 O -0.583 6.583 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.106 4.106 21 C -0.115 4.115 22 C 0.103 3.897 23 F -0.226 7.226 24 C -0.104 4.104 25 C -0.076 4.076 26 H 0.245 0.755 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.407 0.593 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.128 -6.773 -4.621 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.335 4.335 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.088 0.912 14 C 0.004 3.996 15 N -0.355 5.355 16 C 0.337 3.663 17 O -0.465 6.465 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.048 3.952 23 F -0.208 7.208 24 C -0.122 4.122 25 C -0.095 4.095 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.244 0.756 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.177 0.823 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.215 -6.829 -3.890 18.924 hybrid contribution -0.345 1.289 -0.286 1.365 sum 16.870 -5.540 -4.177 18.241 Atomic orbital electron populations 1.70012 1.06313 1.25149 1.58798 1.25515 0.96401 1.00475 1.03827 0.85184 0.78416 0.80358 0.76521 1.18868 1.21892 1.22715 1.19222 0.90507 0.82446 1.41290 0.89598 1.46000 1.03668 0.99979 1.85900 1.22042 0.87756 0.92068 0.96392 1.23480 0.95668 0.98174 0.99973 1.22569 0.92896 0.84884 0.97003 0.91195 1.21670 0.83066 0.99140 0.95704 1.45893 1.05714 1.60386 1.23476 1.18709 0.84289 0.78434 0.84827 1.90703 1.87665 1.45648 1.22505 1.20061 0.93431 1.04123 0.96867 1.21522 1.00221 0.95966 0.93373 1.21339 0.91099 0.99123 1.00843 1.20787 0.96147 0.99071 0.95617 1.21092 0.92616 0.87622 0.93833 1.92789 1.89062 1.62993 1.75918 1.21331 0.99089 0.97151 0.94607 1.21372 0.91042 0.97106 0.99974 0.94584 0.94608 0.95843 0.88125 0.90274 0.90067 0.93792 0.75581 0.84650 0.82645 0.87358 0.87069 0.82304 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.83 11.51 21.65 0.25 -56.58 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.21 -10.89 10.55 84.03 0.89 -10.00 16 8 H 0.09 4.31 7.50 -2.91 -0.02 4.29 16 9 N -0.63 -30.01 3.65 -713.98 -2.61 -32.62 16 10 C 0.14 6.46 7.39 83.18 0.61 7.08 16 11 C -0.13 -4.56 8.03 30.92 0.25 -4.31 16 12 C 0.13 4.81 4.10 41.78 0.17 4.98 16 13 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 14 C 0.13 4.53 5.52 86.38 0.48 5.00 16 15 N -0.70 -23.77 5.28 -465.98 -2.46 -26.23 16 16 C 0.55 19.21 7.77 86.79 0.67 19.89 16 17 O -0.58 -23.97 16.35 -3.88 -0.06 -24.04 16 18 C -0.14 -4.07 5.87 -20.09 -0.12 -4.19 16 19 C -0.09 -2.23 9.54 22.53 0.21 -2.01 16 20 C -0.11 -2.05 9.68 22.23 0.22 -1.83 16 21 C -0.12 -2.02 5.60 -19.81 -0.11 -2.13 16 22 C 0.10 1.21 7.67 71.23 0.55 1.75 16 23 F -0.23 -4.07 17.34 44.97 0.78 -3.29 16 24 C -0.10 -1.95 9.68 22.23 0.22 -1.73 16 25 C -0.08 -1.91 9.60 22.53 0.22 -1.69 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.04 1.86 7.12 -2.39 -0.02 1.85 16 28 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.08 2.72 8.12 -2.39 -0.02 2.71 16 31 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 12.81 6.41 -92.71 -0.59 12.22 16 34 H 0.14 3.09 6.40 -2.92 -0.02 3.07 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.11 0.76 8.08 -2.38 -0.02 0.74 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.13 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -71.62 336.03 3.12 -68.51 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.47 Total: 19.73 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 4.72 Total: 7.40 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.82 Total: -115.43 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.62 3.12 -68.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039067727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.303 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds