Wall clock time and date at job start Tue Mar 31 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00523 * 2 1 4 4 H 1.48505 * 109.47309 * 240.00363 * 3 2 1 5 5 H 1.48507 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47235 * 120.00136 * 3 2 1 7 7 C 1.38816 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99943 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00451 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.84772 * 336.20029 * 10 9 7 12 12 C 1.53781 * 113.69176 * 107.46403 * 10 9 7 13 13 C 1.54049 * 87.08031 * 139.99046 * 12 10 9 14 14 H 1.09000 * 113.61076 * 89.06984 * 13 12 10 15 15 C 1.52990 * 113.70090 * 220.05426 * 13 12 10 16 16 N 1.46497 * 109.47171 * 272.42414 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21548 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.47854 * 120.00224 * 179.97438 * 17 16 15 20 20 C 1.39596 * 120.13092 * 359.72968 * 19 17 16 21 21 C 1.37942 * 119.90464 * 179.74476 * 20 19 17 22 22 C 1.38345 * 120.17425 * 0.53175 * 21 20 19 23 23 C 1.38549 * 120.26453 * 359.71666 * 22 21 20 24 24 F 1.35107 * 119.95305 * 180.02562 * 23 22 21 25 25 C 1.38210 * 120.09606 * 0.03271 * 23 22 21 26 26 C 1.53781 * 113.61760 * 205.00099 * 10 9 7 27 27 H 0.97004 * 119.99807 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00169 * 0.02562 * 9 7 2 29 29 H 1.09005 * 113.61471 * 254.54629 * 12 10 9 30 30 H 1.08996 * 113.61178 * 25.35971 * 12 10 9 31 31 H 1.09007 * 109.47036 * 32.41747 * 15 13 12 32 32 H 1.08994 * 109.47734 * 152.42153 * 15 13 12 33 33 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 34 34 H 1.08001 * 120.04675 * 0.02562 * 20 19 17 35 35 H 1.07999 * 119.91659 * 180.27965 * 21 20 19 36 36 H 1.07996 * 119.86865 * 179.70651 * 22 21 20 37 37 H 1.07994 * 120.08888 * 179.97438 * 25 23 22 38 38 H 1.09002 * 113.61445 * 334.48426 * 26 10 9 39 39 H 1.09002 * 113.61408 * 105.30156 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0651 -3.5638 -0.4078 12 6 2.0018 -4.4039 1.3413 13 6 1.8494 -5.7006 0.5238 14 1 2.7998 -6.1653 0.2610 15 6 0.8478 -6.6905 1.1218 16 7 1.5309 -7.5512 2.0907 17 6 0.8421 -8.5053 2.7477 18 8 -0.3458 -8.6520 2.5360 19 6 1.5316 -9.3743 3.7251 20 6 2.8972 -9.2128 3.9654 21 6 3.5347 -10.0226 4.8822 22 6 2.8266 -11.0017 5.5559 23 6 1.4721 -11.1718 5.3192 24 9 0.7866 -12.1296 5.9810 25 6 0.8212 -10.3631 4.4067 26 6 1.2595 -4.8285 -0.5971 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.9310 -4.3520 1.9090 30 1 1.1253 -4.1587 1.9410 31 1 0.0497 -6.1421 1.6223 32 1 0.4239 -7.3036 0.3266 33 1 2.4790 -7.4344 2.2594 34 1 3.4528 -8.4517 3.4377 35 1 4.5902 -9.8948 5.0716 36 1 3.3317 -11.6362 6.2692 37 1 -0.2345 -10.4960 4.2220 38 1 0.1792 -4.7006 -0.5280 39 1 1.5883 -5.1186 -1.5950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086017953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:48 Heat of formation + Delta-G solvation = -27.877839 kcal Electronic energy + Delta-G solvation = -21733.383798 eV Core-core repulsion = 18170.132748 eV Total energy + Delta-G solvation = -3563.251050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.28326 -40.45030 -38.87658 -38.13189 -34.86506 -33.36781 -31.80603 -31.06149 -30.18300 -27.49186 -25.12553 -24.50842 -23.63848 -23.04470 -21.13994 -20.84755 -19.23006 -18.50491 -17.07685 -16.92373 -16.64802 -16.38639 -16.03131 -15.78621 -15.42106 -14.89109 -14.69521 -14.33309 -13.99128 -13.61604 -13.54167 -13.45567 -12.97141 -12.57915 -12.46103 -11.94107 -11.84943 -11.76682 -11.43488 -11.26610 -10.84562 -10.58066 -10.35493 -10.20138 -10.00059 -9.86031 -9.60835 -9.52659 -9.26674 -9.09018 -8.88733 -6.98804 -5.80068 -3.09148 0.29452 0.70198 2.49272 2.90710 3.36863 3.41662 3.46130 3.47395 3.80940 4.24508 4.28411 4.53326 4.56626 4.61020 4.83066 4.91391 4.93849 5.18557 5.23704 5.43748 5.45105 5.49424 5.58208 5.71361 5.76354 5.77730 5.81926 5.89679 6.06350 6.17351 6.26791 6.31425 6.33348 6.38957 6.55550 6.78627 7.07780 7.31403 7.66376 8.00208 8.38443 9.49379 10.07549 10.41638 11.42219 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.002373 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.897720 B =11797.183270 C =12063.073791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.554 3.446 18 O -0.534 6.534 19 C -0.101 4.101 20 C -0.097 4.097 21 C -0.096 4.096 22 C -0.132 4.132 23 C 0.092 3.908 24 F -0.136 7.136 25 C -0.097 4.097 26 C -0.142 4.142 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -22.972 8.662 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.368 5.368 17 C 0.340 3.660 18 O -0.411 6.411 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.151 4.151 23 C 0.073 3.927 24 F -0.114 7.114 25 C -0.117 4.117 26 C -0.182 4.182 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.099 0.901 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.321 -22.880 8.485 25.477 hybrid contribution 0.501 0.766 0.313 0.967 sum 7.822 -22.114 8.799 25.053 Atomic orbital electron populations 1.69649 1.05148 1.25905 1.57285 1.24776 0.95527 0.97811 1.02783 0.86263 0.78538 0.83497 0.77842 1.21221 1.21670 1.21248 1.19251 0.91022 0.84251 1.43160 0.91157 1.42403 1.05774 0.99870 1.86990 1.21507 0.95316 0.85058 0.92743 0.90670 1.24014 1.01393 0.94851 0.99996 1.22696 0.98362 0.94354 0.99356 0.89315 1.21508 0.95382 0.91451 0.90810 1.45964 1.13280 1.34749 1.42763 1.18137 0.86658 0.80451 0.80780 1.90801 1.14892 1.70191 1.65264 1.19843 0.94039 0.97684 0.98896 1.21436 0.93300 0.99195 0.97683 1.20995 1.00596 0.94405 0.95445 1.21380 0.92515 0.99894 1.01316 1.17566 0.90458 0.89647 0.95067 1.91533 1.79664 1.61283 1.78968 1.21260 1.01832 0.93920 0.94667 1.23449 1.01093 0.96941 0.96696 0.93364 0.78048 0.92761 0.90295 0.90886 0.91429 0.76452 0.84671 0.84143 0.84225 0.83295 0.90058 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.71 -17.51 5.40 -52.64 -0.28 -17.79 16 10 C 0.17 3.11 4.48 -67.12 -0.30 2.81 16 11 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 12 C -0.16 -2.55 7.44 -25.78 -0.19 -2.74 16 13 C -0.13 -1.61 3.76 -89.67 -0.34 -1.95 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.64 5.52 -4.05 -0.02 1.62 16 16 N -0.72 -7.65 5.51 -61.25 -0.34 -7.99 16 17 C 0.55 6.91 7.77 -12.33 -0.10 6.81 16 18 O -0.53 -8.73 16.35 5.32 0.09 -8.64 16 19 C -0.10 -1.01 5.87 -104.97 -0.62 -1.62 16 20 C -0.10 -0.68 9.54 -39.18 -0.37 -1.05 16 21 C -0.10 -0.56 10.03 -39.65 -0.40 -0.95 16 22 C -0.13 -0.89 10.02 -39.43 -0.40 -1.28 16 23 C 0.09 0.82 7.29 -39.48 -0.29 0.54 16 24 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 25 C -0.10 -0.98 9.57 -39.11 -0.37 -1.36 16 26 C -0.14 -2.17 7.38 -25.92 -0.19 -2.36 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 10.12 7.92 -40.82 -0.32 9.80 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 31 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.14 6.51 -40.82 -0.27 2.87 16 34 H 0.14 0.63 6.40 -52.49 -0.34 0.30 16 35 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.15 1.59 7.65 -52.49 -0.40 1.19 16 38 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -32.49 337.85 -8.60 -41.09 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.07 Total: 8.59 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.83 Total: -8.87 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.10 Total: -53.06 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.49 -8.60 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086017953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.210 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds