Wall clock time and date at job start Tue Mar 31 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99753 * 2 1 4 4 H 1.48502 * 109.47027 * 239.99563 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47543 * 119.99511 * 3 2 1 7 7 C 1.38814 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61384 * 154.99768 * 10 9 7 12 12 C 1.53777 * 87.08001 * 89.11786 * 11 10 9 13 13 C 1.53004 * 113.61786 * 139.98426 * 12 11 10 14 14 N 1.46494 * 109.47513 * 176.52564 * 13 12 11 15 15 C 1.34777 * 120.00390 * 179.97438 * 14 13 12 16 16 O 1.21576 * 119.99434 * 0.02562 * 15 14 13 17 17 C 1.47691 * 120.00289 * 180.02562 * 15 14 13 18 18 C 1.39654 * 120.16650 * 0.02562 * 17 15 14 19 19 C 1.37850 * 119.88048 * 180.02562 * 18 17 15 20 20 C 1.38458 * 120.21845 * 359.97438 * 19 18 17 21 21 C 1.38205 * 120.33997 * 0.02562 * 20 19 18 22 22 C 1.38323 * 120.11600 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.11520 * 179.97438 * 22 21 20 24 24 C 1.53774 * 87.17577 * 25.39059 * 12 11 10 25 25 H 0.96993 * 120.00217 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99811 * 359.97438 * 9 7 2 27 27 H 1.09007 * 112.84983 * 23.80224 * 10 9 7 28 28 H 1.08993 * 113.61727 * 334.56707 * 11 10 9 29 29 H 1.09002 * 113.61654 * 203.66322 * 11 10 9 30 30 H 1.09003 * 113.61385 * 270.79748 * 12 11 10 31 31 H 1.08994 * 109.47227 * 56.52447 * 13 12 11 32 32 H 1.09003 * 109.46794 * 296.52934 * 13 12 11 33 33 H 0.97005 * 119.99810 * 0.02562 * 14 13 12 34 34 H 1.08002 * 120.06187 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.89208 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.83371 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.94706 * 179.72583 * 21 20 19 38 38 H 1.09003 * 113.61821 * 89.16014 * 24 12 11 39 39 H 1.08996 * 113.61446 * 220.06096 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.2604 -4.8287 0.5961 12 6 0.7207 -5.0791 -0.8220 13 6 0.6198 -6.5616 -1.1866 14 7 0.0213 -6.6979 -2.5167 15 6 -0.1666 -7.9217 -3.0491 16 8 0.1603 -8.9126 -2.4252 17 6 -0.7696 -8.0590 -4.3903 18 6 -1.1458 -6.9230 -5.1102 19 6 -1.7086 -7.0580 -6.3613 20 6 -1.9014 -8.3159 -6.9066 21 6 -1.5324 -9.4462 -6.2022 22 6 -0.9675 -9.3270 -4.9452 23 9 -0.6073 -10.4319 -4.2564 24 6 1.9980 -4.4015 -1.3455 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0658 -3.5637 0.4059 28 1 0.4941 -4.5190 1.3065 29 1 1.8873 -5.6366 0.9736 30 1 -0.1909 -4.5252 -1.0463 31 1 -0.0029 -7.0745 -0.4537 32 1 1.6162 -7.0036 -1.1895 33 1 -0.2392 -5.9071 -3.0146 34 1 -0.9962 -5.9404 -4.6875 35 1 -2.0000 -6.1796 -6.9181 36 1 -2.3425 -8.4145 -7.8875 37 1 -1.6898 -10.4245 -6.6317 38 1 2.8269 -5.0922 -1.4999 39 1 1.8262 -3.7473 -2.2002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090900826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:36 Heat of formation + Delta-G solvation = -24.975958 kcal Electronic energy + Delta-G solvation = -22182.208061 eV Core-core repulsion = 18619.082846 eV Total energy + Delta-G solvation = -3563.125215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.04439 -40.22359 -38.88471 -38.17801 -34.74324 -33.28485 -31.83733 -30.83341 -30.11638 -27.42563 -25.09125 -24.36947 -23.63210 -22.88666 -21.68486 -20.73317 -18.73472 -18.17428 -17.38806 -17.17737 -16.71347 -15.96894 -15.60777 -15.49968 -15.16074 -14.86065 -14.73326 -14.14971 -14.08236 -13.48711 -13.39462 -13.31798 -12.90621 -12.59538 -12.39374 -12.26851 -11.94452 -11.70639 -11.42573 -11.06728 -10.85480 -10.52021 -10.24233 -10.18275 -9.84279 -9.71802 -9.56539 -9.49657 -9.15382 -8.98022 -8.90262 -7.03377 -5.83707 -3.12868 0.38083 0.78600 2.62514 3.04118 3.40312 3.42524 3.45001 3.45757 3.87141 4.27879 4.38896 4.53148 4.54105 4.83356 4.83924 5.03239 5.03715 5.20376 5.30728 5.42435 5.57879 5.61117 5.62644 5.68908 5.75340 5.84612 5.91729 5.94139 6.08117 6.19265 6.34457 6.35564 6.41344 6.56126 6.71201 6.86893 7.01194 7.41746 7.65835 8.11133 8.35574 9.46174 10.03538 10.37793 11.38659 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002876 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.549626 B = 9733.200008 C =10638.901417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.131 3.869 14 N -0.717 5.717 15 C 0.553 3.447 16 O -0.530 6.530 17 C -0.172 4.172 18 C -0.057 4.057 19 C -0.138 4.138 20 C -0.067 4.067 21 C -0.167 4.167 22 C 0.157 3.843 23 F -0.116 7.116 24 C -0.169 4.169 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -16.528 -13.190 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.008 3.992 14 N -0.368 5.368 15 C 0.339 3.661 16 O -0.408 6.408 17 C -0.176 4.176 18 C -0.076 4.076 19 C -0.157 4.157 20 C -0.085 4.085 21 C -0.186 4.186 22 C 0.136 3.864 23 F -0.094 7.094 24 C -0.210 4.210 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.786 -17.084 -12.650 21.592 hybrid contribution -0.021 1.108 -0.244 1.135 sum -3.807 -15.976 -12.895 20.880 Atomic orbital electron populations 1.69647 1.05138 1.25931 1.57400 1.24762 0.95541 0.97790 1.02740 0.86243 0.78524 0.83352 0.77918 1.21209 1.21673 1.21178 1.19250 0.91104 0.83977 1.43098 0.91035 1.42167 1.05676 0.99439 1.87152 1.21089 0.95126 0.85574 0.92690 1.23439 1.00514 0.99713 0.95046 1.22721 0.99616 0.92808 0.98758 1.21525 0.98139 0.97186 0.82318 1.45951 1.63290 1.07632 1.19949 1.18015 0.79008 0.83847 0.85209 1.90834 1.50752 1.37193 1.62032 1.20156 1.07179 0.93230 0.96995 1.21322 0.94556 0.97560 0.94113 1.21208 1.00584 0.98136 0.95729 1.21233 0.96081 0.91621 0.99561 1.21184 1.02750 1.00957 0.93714 1.17743 0.96121 0.82134 0.90364 1.91597 1.88627 1.50356 1.78781 1.23924 0.95683 0.99635 1.01772 0.93371 0.78114 0.91920 0.91265 0.90404 0.88867 0.91604 0.91355 0.76321 0.84360 0.84470 0.84494 0.84078 0.91363 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.08 5.31 -52.55 -0.28 -17.36 16 10 C 0.17 3.20 4.57 -67.03 -0.31 2.90 16 11 C -0.15 -2.32 7.39 -25.92 -0.19 -2.52 16 12 C -0.12 -1.76 3.62 -89.81 -0.33 -2.08 16 13 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 14 N -0.72 -8.99 5.51 -61.30 -0.34 -9.32 16 15 C 0.55 7.90 7.77 -12.40 -0.10 7.80 16 16 O -0.53 -9.54 15.34 5.30 0.08 -9.46 16 17 C -0.17 -2.00 5.88 -104.91 -0.62 -2.62 16 18 C -0.06 -0.49 9.54 -39.19 -0.37 -0.86 16 19 C -0.14 -0.94 10.03 -39.64 -0.40 -1.34 16 20 C -0.07 -0.43 10.03 -39.51 -0.40 -0.82 16 21 C -0.17 -1.37 10.01 -39.56 -0.40 -1.76 16 22 C 0.16 1.82 7.29 -38.96 -0.28 1.54 16 23 F -0.12 -1.63 15.55 2.25 0.04 -1.60 16 24 C -0.17 -2.74 7.44 -25.83 -0.19 -2.94 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.38 9.82 7.90 -40.82 -0.32 9.50 16 27 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.40 4.19 6.51 -40.82 -0.27 3.92 16 34 H 0.14 0.96 6.41 -52.49 -0.34 0.62 16 35 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -32.63 335.86 -8.67 -41.30 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.09 Total: 9.35 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.84 Total: -8.13 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.11 Total: -53.40 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.63 -8.67 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090900826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.325 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds