Wall clock time and date at job start Tue Mar 31 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99753 * 2 1 4 4 H 1.48502 * 109.47027 * 239.99563 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47543 * 119.99511 * 3 2 1 7 7 C 1.38814 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53780 * 113.61384 * 154.99768 * 10 9 7 12 12 C 1.53777 * 87.08001 * 89.11786 * 11 10 9 13 13 C 1.53004 * 113.61786 * 139.98426 * 12 11 10 14 14 N 1.46494 * 109.47513 * 176.52564 * 13 12 11 15 15 C 1.34777 * 120.00390 * 179.97438 * 14 13 12 16 16 O 1.21576 * 119.99434 * 0.02562 * 15 14 13 17 17 C 1.47691 * 120.00289 * 180.02562 * 15 14 13 18 18 C 1.39654 * 120.16650 * 0.02562 * 17 15 14 19 19 C 1.37850 * 119.88048 * 180.02562 * 18 17 15 20 20 C 1.38458 * 120.21845 * 359.97438 * 19 18 17 21 21 C 1.38205 * 120.33997 * 0.02562 * 20 19 18 22 22 C 1.38323 * 120.11600 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.11520 * 179.97438 * 22 21 20 24 24 C 1.53774 * 87.17577 * 25.39059 * 12 11 10 25 25 H 0.96993 * 120.00217 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99811 * 359.97438 * 9 7 2 27 27 H 1.09007 * 112.84983 * 23.80224 * 10 9 7 28 28 H 1.08993 * 113.61727 * 334.56707 * 11 10 9 29 29 H 1.09002 * 113.61654 * 203.66322 * 11 10 9 30 30 H 1.09003 * 113.61385 * 270.79748 * 12 11 10 31 31 H 1.08994 * 109.47227 * 56.52447 * 13 12 11 32 32 H 1.09003 * 109.46794 * 296.52934 * 13 12 11 33 33 H 0.97005 * 119.99810 * 0.02562 * 14 13 12 34 34 H 1.08002 * 120.06187 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.89208 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.83371 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.94706 * 179.72583 * 21 20 19 38 38 H 1.09003 * 113.61821 * 89.16014 * 24 12 11 39 39 H 1.08996 * 113.61446 * 220.06096 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.2604 -4.8287 0.5961 12 6 0.7207 -5.0791 -0.8220 13 6 0.6198 -6.5616 -1.1866 14 7 0.0213 -6.6979 -2.5167 15 6 -0.1666 -7.9217 -3.0491 16 8 0.1603 -8.9126 -2.4252 17 6 -0.7696 -8.0590 -4.3903 18 6 -1.1458 -6.9230 -5.1102 19 6 -1.7086 -7.0580 -6.3613 20 6 -1.9014 -8.3159 -6.9066 21 6 -1.5324 -9.4462 -6.2022 22 6 -0.9675 -9.3270 -4.9452 23 9 -0.6073 -10.4319 -4.2564 24 6 1.9980 -4.4015 -1.3455 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0658 -3.5637 0.4059 28 1 0.4941 -4.5190 1.3065 29 1 1.8873 -5.6366 0.9736 30 1 -0.1909 -4.5252 -1.0463 31 1 -0.0029 -7.0745 -0.4537 32 1 1.6162 -7.0036 -1.1895 33 1 -0.2392 -5.9071 -3.0146 34 1 -0.9962 -5.9404 -4.6875 35 1 -2.0000 -6.1796 -6.9181 36 1 -2.3425 -8.4145 -7.8875 37 1 -1.6898 -10.4245 -6.6317 38 1 2.8269 -5.0922 -1.4999 39 1 1.8262 -3.7473 -2.2002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090900826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:36 Heat of formation + Delta-G solvation = -46.002793 kcal Electronic energy + Delta-G solvation = -22183.119853 eV Core-core repulsion = 18619.082846 eV Total energy + Delta-G solvation = -3564.037007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.94495 -41.22675 -40.06544 -39.16238 -36.08829 -35.02659 -32.72459 -31.86418 -31.48638 -28.71969 -26.44623 -25.83173 -24.89447 -23.71260 -22.92486 -21.72974 -19.98107 -19.41941 -19.05063 -18.09461 -17.63336 -16.92696 -16.75398 -16.56102 -16.31574 -16.18205 -15.73429 -15.55364 -15.39498 -14.76734 -14.64685 -14.46524 -14.16010 -13.75658 -13.33679 -13.24168 -13.02045 -12.92642 -12.91702 -12.62632 -12.33584 -12.19505 -12.07393 -11.57997 -11.48135 -11.12725 -10.91807 -10.77065 -10.33819 -10.05536 -9.78168 -8.99477 -7.94576 -5.22900 -0.35111 0.14712 1.49081 1.51269 1.57370 1.73468 2.03899 2.56631 2.66613 3.16405 3.37692 3.51528 3.66894 3.72572 3.78128 3.87858 3.97915 4.14355 4.26201 4.28256 4.31557 4.38604 4.66071 4.71340 4.77126 4.92586 4.96777 4.98594 5.00866 5.10434 5.20381 5.23808 5.33810 5.34577 5.45733 5.53360 5.65274 5.79610 6.29022 6.40693 7.07121 7.34246 8.10996 8.33716 9.28437 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.002876 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.549626 B = 9733.200008 C =10638.901417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.139 3.861 14 N -0.708 5.708 15 C 0.549 3.451 16 O -0.578 6.578 17 C -0.197 4.197 18 C -0.059 4.059 19 C -0.131 4.131 20 C -0.052 4.052 21 C -0.164 4.164 22 C 0.122 3.878 23 F -0.141 7.141 24 C -0.153 4.153 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.089 0.911 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -16.509 -15.262 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.035 3.965 11 C -0.175 4.175 12 C -0.120 4.120 13 C 0.016 3.984 14 N -0.360 5.360 15 C 0.337 3.663 16 O -0.459 6.459 17 C -0.200 4.200 18 C -0.078 4.078 19 C -0.149 4.149 20 C -0.070 4.070 21 C -0.183 4.183 22 C 0.101 3.899 23 F -0.119 7.119 24 C -0.194 4.194 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.194 0.806 37 H 0.179 0.821 38 H 0.108 0.892 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.785 -17.079 -14.738 22.874 hybrid contribution -0.007 1.059 0.331 1.109 sum -3.793 -16.020 -14.407 21.877 Atomic orbital electron populations 1.69796 1.06516 1.26167 1.59403 1.25531 0.96371 1.00979 1.03695 0.85237 0.77216 0.79296 0.78163 1.20354 1.22235 1.20577 1.19630 0.91509 0.85200 1.41240 0.90634 1.42290 1.05338 1.00503 1.87632 1.21403 0.95042 0.84893 0.95186 1.23350 1.00019 0.98706 0.95376 1.22501 0.98569 0.93264 0.97715 1.21355 0.98212 0.95958 0.82862 1.45858 1.62711 1.07811 1.19592 1.18486 0.78319 0.83395 0.86058 1.90796 1.52976 1.38600 1.63502 1.20091 1.09204 0.94506 0.96246 1.21549 0.94329 0.97062 0.94820 1.21649 0.98829 0.99625 0.94808 1.21735 0.94099 0.90608 1.00573 1.21496 1.01650 1.02856 0.92294 1.18236 0.98205 0.81540 0.91887 1.91524 1.89270 1.51517 1.79627 1.23743 0.97174 0.99197 0.99285 0.93981 0.79288 0.92226 0.92263 0.87770 0.89690 0.91855 0.91376 0.75044 0.83041 0.81324 0.80591 0.82128 0.89209 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.23 9.97 84.03 0.84 -12.39 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -35.00 5.31 -320.17 -1.70 -36.70 16 10 C 0.14 5.44 4.57 45.58 0.21 5.65 16 11 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 12 C -0.10 -2.87 3.62 -10.27 -0.04 -2.91 16 13 C 0.14 3.65 5.50 86.38 0.47 4.12 16 14 N -0.71 -17.41 5.51 -466.12 -2.57 -19.97 16 15 C 0.55 15.93 7.77 86.74 0.67 16.60 16 16 O -0.58 -21.57 15.34 -3.96 -0.06 -21.63 16 17 C -0.20 -4.55 5.88 -20.05 -0.12 -4.66 16 18 C -0.06 -0.91 9.54 22.52 0.21 -0.69 16 19 C -0.13 -1.31 10.03 22.23 0.22 -1.08 16 20 C -0.05 -0.46 10.03 22.31 0.22 -0.24 16 21 C -0.16 -2.36 10.01 22.28 0.22 -2.13 16 22 C 0.12 2.83 7.29 22.67 0.17 3.00 16 23 F -0.14 -4.19 15.55 44.97 0.70 -3.49 16 24 C -0.15 -4.78 7.44 31.18 0.23 -4.55 16 25 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.37 19.47 7.90 -92.71 -0.73 18.73 16 27 H 0.06 2.26 8.10 -2.38 -0.02 2.24 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.82 7.88 -2.39 -0.02 1.81 16 33 H 0.41 8.19 6.51 -92.70 -0.60 7.59 16 34 H 0.15 1.79 6.41 -2.91 -0.02 1.77 16 35 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 36 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.84 335.86 2.45 -70.39 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.25 Total: 28.56 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.02 Total: -6.81 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.98 Total: -114.15 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.70 Total: -3.49 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.84 2.45 -70.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090900826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.387 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds