Wall clock time and date at job start Tue Mar 31 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46970 * 180.02562 * 19 18 17 21 21 F 1.39907 * 109.47200 * 300.00298 * 20 19 18 22 22 F 1.39909 * 109.47062 * 60.00247 * 20 19 18 23 23 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 24 24 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 26 26 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 27 27 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 28 28 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 29 29 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 30 30 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 31 31 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 32 32 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 33 33 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 34 34 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 35 35 H 1.08994 * 109.46835 * 300.00399 * 19 18 17 36 36 H 1.09000 * 109.46608 * 60.00105 * 19 18 17 37 37 H 1.09000 * 109.47351 * 180.02562 * 20 19 18 38 38 H 1.08999 * 113.61567 * 334.48111 * 23 10 9 39 39 H 1.08998 * 113.61196 * 105.38466 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 8 0.7100 -10.2459 4.4381 19 6 1.2994 -11.1216 5.4014 20 6 0.2259 -12.0529 5.9681 21 9 -0.7756 -11.2918 6.5807 22 9 -0.3313 -12.8082 4.9305 23 6 1.2469 -4.8365 -0.5606 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 3.0560 -3.5693 -0.4293 27 1 2.9742 -4.3216 1.9018 28 1 1.1688 -4.1300 1.9705 29 1 2.8060 -6.1607 0.2828 30 1 0.0882 -6.1151 1.7060 31 1 0.4334 -7.2968 0.4205 32 1 2.5317 -7.3971 2.3080 33 1 2.4196 -9.8859 3.3348 34 1 2.0731 -8.7043 4.6201 35 1 2.0793 -11.7148 4.9240 36 1 1.7339 -10.5331 6.2095 37 1 0.6753 -12.7206 6.7032 38 1 0.1684 -4.7076 -0.4690 39 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100533917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:29 Heat of formation + Delta-G solvation = -155.138144 kcal Electronic energy + Delta-G solvation = -22443.582353 eV Core-core repulsion = 18444.043657 eV Total energy + Delta-G solvation = -3999.538696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.139 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.22043 -47.26012 -39.99817 -38.65976 -37.80928 -34.71503 -33.31167 -31.11061 -30.30536 -28.66774 -26.38179 -25.11096 -23.81676 -23.37275 -21.10727 -20.84062 -19.10431 -18.28995 -17.85636 -17.73834 -17.05095 -16.69528 -16.51144 -16.42256 -15.62940 -15.14105 -14.84571 -14.62425 -14.12377 -14.07429 -13.61828 -13.60539 -13.46182 -13.17566 -12.98277 -12.58542 -12.39928 -11.92622 -11.83091 -11.39716 -11.39162 -11.25174 -10.85599 -10.54462 -10.35916 -10.27601 -10.15853 -9.85786 -9.83867 -9.50447 -9.08694 -8.88148 -6.97544 -5.79229 -3.08344 2.40104 2.48403 3.26603 3.41709 3.46625 3.48720 3.59374 3.75761 4.00675 4.41127 4.56975 4.57953 4.66596 4.68428 4.74616 4.93120 4.94748 4.98594 5.20523 5.45224 5.47383 5.79846 5.82241 5.90872 6.07664 6.20790 6.27799 6.31852 6.35032 6.43573 6.56977 6.80203 7.09578 7.37342 7.67679 8.10797 8.39268 9.50214 10.08589 10.42625 11.43101 Molecular weight = 292.14amu Principal moments of inertia in cm(-1) A = 0.036367 B = 0.002113 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.742720 B =13249.003537 C =13461.099994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.161 4.161 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.723 5.723 15 C 0.509 3.491 16 O -0.518 6.518 17 C 0.044 3.956 18 O -0.351 6.351 19 C 0.006 3.994 20 C 0.273 3.727 21 F -0.198 7.198 22 F -0.198 7.198 23 C -0.142 4.142 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 -25.205 10.894 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.202 4.202 12 C -0.146 4.146 13 C 0.010 3.990 14 N -0.377 5.377 15 C 0.293 3.707 16 O -0.392 6.392 17 C -0.036 4.036 18 O -0.269 6.269 19 C -0.072 4.072 20 C 0.219 3.781 21 F -0.179 7.179 22 F -0.180 7.180 23 C -0.181 4.181 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.080 -25.122 10.686 28.203 hybrid contribution 0.857 0.975 0.191 1.312 sum 7.936 -24.147 10.877 27.647 Atomic orbital electron populations 1.69661 1.05136 1.25777 1.57382 1.24783 0.95534 0.97818 1.02839 0.86185 0.78634 0.83811 0.77514 1.21690 1.21757 1.20761 1.19292 0.91048 0.84241 1.42991 0.91110 1.42418 1.05784 0.99883 1.87046 1.21518 0.95227 0.85083 0.92830 1.24004 1.01295 0.94771 1.00144 1.22693 0.98419 0.94430 0.99097 1.21471 0.95049 0.91728 0.90708 1.45914 1.12849 1.36166 1.42726 1.20110 0.87873 0.80972 0.81732 1.90771 1.14912 1.68523 1.65024 1.22288 0.92278 0.92564 0.96440 1.88112 1.33542 1.48773 1.56441 1.23769 0.95716 0.93678 0.94036 1.21985 0.84024 0.87083 0.85026 1.93036 1.64279 1.77430 1.83146 1.93030 1.87256 1.76795 1.60894 1.23429 1.00978 0.97012 0.96725 0.93421 0.78043 0.90760 0.92772 0.90301 0.89338 0.91050 0.91610 0.76583 0.89927 0.89801 0.89934 0.89859 0.85725 0.90039 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.68 5.41 -52.64 -0.28 -17.97 16 10 C 0.17 3.14 4.47 -67.12 -0.30 2.84 16 11 C -0.16 -2.58 7.45 -25.77 -0.19 -2.77 16 12 C -0.13 -1.62 3.76 -89.67 -0.34 -1.96 16 13 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 14 N -0.72 -7.62 5.56 -60.29 -0.33 -7.96 16 15 C 0.51 6.38 7.91 -10.99 -0.09 6.30 16 16 O -0.52 -9.32 16.50 -14.36 -0.24 -9.55 16 17 C 0.04 0.36 6.42 36.00 0.23 0.59 16 18 O -0.35 -3.85 9.76 -55.14 -0.54 -4.39 16 19 C 0.01 0.04 6.16 37.15 0.23 0.26 16 20 C 0.27 1.81 5.63 37.15 0.21 2.02 16 21 F -0.20 -2.04 17.28 2.25 0.04 -2.00 16 22 F -0.20 -2.00 17.28 2.25 0.04 -1.96 16 23 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.39 10.22 7.91 -40.82 -0.32 9.90 16 26 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.40 2.90 8.47 -40.82 -0.35 2.56 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -36.64 343.61 -6.82 -43.46 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.68 Total: 6.22 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.71 Total: -0.79 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.10 Total: -53.36 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.78 Total: -13.95 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.64 -6.82 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100533917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.676 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds