Wall clock time and date at job start Tue Mar 31 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47202 * 2 1 4 4 C 1.34774 * 119.99998 * 269.72325 * 3 2 1 5 5 O 1.21365 * 119.99807 * 1.29894 * 4 3 2 6 6 C 1.49307 * 120.00254 * 181.30030 * 4 3 2 7 7 O 1.21413 * 119.99838 * 354.82792 * 6 4 3 8 8 N 1.34775 * 120.00440 * 174.83057 * 6 4 3 9 9 C 1.40291 * 119.99952 * 179.97438 * 8 6 4 10 10 C 1.40718 * 126.10571 * 359.69299 * 9 8 6 11 11 N 1.30874 * 108.37956 * 179.87104 * 10 9 8 12 12 N 1.40057 * 108.43487 * 0.38556 * 11 10 9 13 13 C 1.37299 * 126.05602 * 179.75017 * 12 11 10 14 14 H 1.07998 * 119.99845 * 173.47982 * 13 12 11 15 15 C 1.39006 * 119.99641 * 353.47948 * 13 12 11 16 16 N 1.31278 * 120.00158 * 6.62776 * 15 13 12 17 17 Si 1.86803 * 119.99625 * 186.62225 * 15 13 12 18 18 H 1.48500 * 109.47007 * 94.97183 * 17 15 13 19 19 H 1.48508 * 109.47026 * 214.96783 * 17 15 13 20 20 H 1.48502 * 109.47418 * 334.96672 * 17 15 13 21 21 C 1.35791 * 126.09546 * 179.97438 * 9 8 6 22 22 C 1.46501 * 119.99775 * 90.00177 * 3 2 1 23 23 C 1.52998 * 117.49970 * 1.85450 * 22 3 2 24 24 C 1.53000 * 117.49724 * 293.19556 * 22 3 2 25 25 H 1.09002 * 109.46813 * 300.00378 * 1 2 3 26 26 H 1.09003 * 109.46758 * 59.99932 * 1 2 3 27 27 H 1.08997 * 109.47628 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46813 * 239.99622 * 2 1 3 29 29 H 1.09003 * 109.46758 * 120.00068 * 2 1 3 30 30 H 0.96996 * 119.99780 * 0.02562 * 8 6 4 31 31 H 1.08006 * 125.80554 * 0.02562 * 10 9 8 32 32 H 0.97003 * 119.99543 * 179.97438 * 16 15 13 33 33 H 1.08001 * 126.25190 * 359.95532 * 21 9 8 34 34 H 1.09004 * 115.54624 * 147.53007 * 22 3 2 35 35 H 1.08998 * 117.49949 * 0.02562 * 23 22 3 36 36 H 1.09000 * 117.49454 * 145.02322 * 23 22 3 37 37 H 1.09003 * 117.49715 * 214.98058 * 24 22 3 38 38 H 1.08993 * 117.49776 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2483 2.0146 -1.1672 5 8 2.0284 1.4490 -2.2182 6 6 2.7736 3.4123 -1.1673 7 8 2.9048 4.0115 -0.1195 8 7 3.1020 4.0087 -2.3303 9 6 3.5950 5.3222 -2.3304 10 6 3.7915 6.1341 -1.1980 11 7 4.2655 7.2877 -1.5946 12 7 4.3820 7.2625 -2.9901 13 6 4.8376 8.2877 -3.7817 14 1 4.9869 8.1279 -4.8393 15 6 5.1067 9.5312 -3.2217 16 7 5.0509 9.6908 -1.9199 17 14 5.5478 10.9751 -4.3218 18 1 4.3253 11.7657 -4.6148 19 1 6.5413 11.8372 -3.6324 20 1 6.1274 10.4704 -5.5924 21 6 3.9627 6.0386 -3.4237 22 6 2.2625 2.0717 1.2688 23 6 2.0301 1.2826 2.5587 24 6 1.0499 2.3841 2.1478 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9968 3.5302 -3.1674 31 1 3.5883 5.8522 -0.1754 32 1 5.2390 10.5585 -1.5292 33 1 3.9295 5.7013 -4.4491 34 1 3.0782 2.7948 1.2610 35 1 1.6960 0.2495 2.4634 36 1 2.6927 1.4867 3.3998 37 1 1.0679 3.3124 2.7188 38 1 0.0704 2.0762 1.7820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116331957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:20 Heat of formation + Delta-G solvation = 40.429608 kcal Electronic energy + Delta-G solvation = -23039.916905 eV Core-core repulsion = 19499.547849 eV Total energy + Delta-G solvation = -3540.369056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15547 -41.34045 -39.58609 -38.69192 -36.07792 -35.08610 -34.71433 -32.30310 -31.82294 -29.86649 -27.28545 -25.97684 -24.23037 -23.44770 -22.94571 -22.62921 -21.33233 -20.77536 -19.44297 -18.87012 -17.89497 -17.46474 -17.07665 -16.94083 -16.52403 -15.99613 -15.68187 -15.57619 -15.02741 -14.87498 -14.85588 -14.49197 -14.18812 -13.74541 -13.52072 -13.34850 -12.99836 -12.85702 -12.67446 -12.63772 -12.25497 -12.06684 -11.98752 -11.92801 -11.71155 -11.54424 -11.07443 -10.85927 -10.22228 -10.13472 -9.67315 -8.61363 -8.49632 -6.26610 0.26443 1.24187 1.28944 1.41646 1.58964 1.71370 2.01577 2.10076 2.38191 2.52215 2.82334 2.93665 3.06296 3.39997 3.81519 3.98561 4.04946 4.14943 4.30571 4.39514 4.44378 4.52912 4.68183 4.80339 4.86077 4.94672 4.96376 4.98867 5.07340 5.22591 5.25262 5.30201 5.34937 5.41569 5.91464 5.98591 6.21427 6.40487 6.66561 6.75238 7.08356 7.41355 7.63090 8.49921 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003268 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.882003 B = 8564.705558 C = 9157.988991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.549 5.549 4 C 0.520 3.480 5 O -0.542 6.542 6 C 0.485 3.515 7 O -0.528 6.528 8 N -0.584 5.584 9 C -0.056 4.056 10 C -0.045 4.045 11 N -0.308 5.308 12 N -0.164 5.164 13 C -0.355 4.355 14 H 0.140 0.860 15 C -0.003 4.003 16 N -0.820 5.820 17 Si 1.019 2.981 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.244 1.244 21 C -0.075 4.075 22 C 0.038 3.962 23 C -0.160 4.160 24 C -0.188 4.188 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.421 0.579 31 H 0.178 0.822 32 H 0.278 0.722 33 H 0.186 0.814 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -16.484 4.104 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.279 5.279 4 C 0.303 3.697 5 O -0.420 6.420 6 C 0.267 3.733 7 O -0.406 6.406 8 N -0.229 5.229 9 C -0.162 4.162 10 C -0.221 4.221 11 N -0.140 5.140 12 N 0.068 4.932 13 C -0.486 4.486 14 H 0.158 0.842 15 C -0.216 4.216 16 N -0.447 5.447 17 Si 0.838 3.162 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.167 1.167 21 C -0.226 4.226 22 C -0.066 4.066 23 C -0.197 4.197 24 C -0.226 4.226 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.259 0.741 31 H 0.194 0.806 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.893 -15.101 4.828 16.914 hybrid contribution -0.202 -0.170 -0.900 0.938 sum -6.095 -15.271 3.928 16.905 Atomic orbital electron populations 1.22206 0.94567 1.03774 1.01880 1.21904 0.95500 0.79995 1.04914 1.47348 1.61776 1.14394 1.04422 1.19758 0.79220 0.86254 0.84513 1.90720 1.52787 1.67349 1.31182 1.20214 0.80916 0.88052 0.84084 1.90551 1.53774 1.65243 1.30991 1.42111 1.59578 1.11615 1.09587 1.17302 1.17711 0.87419 0.93799 1.24252 1.06234 0.91992 0.99609 1.78142 1.25563 1.20311 0.89969 1.44831 1.35420 1.08716 1.04214 1.20645 1.46091 0.88832 0.93034 0.84219 1.26868 0.94881 1.02175 0.97654 1.70376 1.36742 1.25286 1.12326 0.84576 0.78401 0.75366 0.77861 1.19204 1.19994 1.16678 1.21994 1.13196 0.88383 0.99040 1.22560 1.02594 1.01009 0.80438 1.23524 1.02213 0.97846 0.96097 1.23424 0.95057 1.00987 1.03176 0.91599 0.94330 0.88838 0.89958 0.86744 0.74149 0.80552 0.91227 0.79663 0.84380 0.86188 0.86442 0.88317 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.21 71.98 0.73 -1.83 16 2 C 0.10 1.69 5.65 86.38 0.49 2.18 16 3 N -0.55 -13.44 2.80 -799.57 -2.24 -15.67 16 4 C 0.52 16.16 7.73 87.23 0.67 16.83 16 5 O -0.54 -17.94 16.07 -3.29 -0.05 -17.99 16 6 C 0.49 17.70 7.76 87.22 0.68 18.38 16 7 O -0.53 -21.00 10.30 -3.44 -0.04 -21.03 16 8 N -0.58 -22.04 5.45 -305.33 -1.66 -23.70 16 9 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 10 C -0.05 -2.40 10.84 85.44 0.93 -1.47 16 11 N -0.31 -18.25 10.42 -56.43 -0.59 -18.83 16 12 N -0.16 -9.04 3.73 -189.97 -0.71 -9.75 16 13 C -0.35 -18.69 10.24 84.02 0.86 -17.83 16 14 H 0.14 6.41 7.84 -2.91 -0.02 6.39 16 15 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 16 N -0.82 -46.55 11.84 21.66 0.26 -46.30 16 17 Si 1.02 38.18 29.56 68.60 2.03 40.21 16 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 21 C -0.08 -3.52 11.50 83.41 0.96 -2.57 16 22 C 0.04 0.88 5.26 44.99 0.24 1.11 16 23 C -0.16 -2.38 9.73 30.62 0.30 -2.08 16 24 C -0.19 -3.70 10.20 30.62 0.31 -3.38 16 25 H 0.07 0.95 5.95 -2.39 -0.01 0.93 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.57 7.43 -2.39 -0.02 1.55 16 29 H 0.11 1.31 6.03 -2.39 -0.01 1.29 16 30 H 0.42 13.58 8.30 -92.71 -0.77 12.81 16 31 H 0.18 9.09 5.92 -2.91 -0.02 9.07 16 32 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16 34 H 0.14 4.03 5.59 -2.38 -0.01 4.02 16 35 H 0.12 1.26 6.13 -2.39 -0.01 1.24 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.10 1.86 6.19 -2.39 -0.01 1.84 16 Total: -1.00 -71.07 321.33 4.24 -66.83 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.35 Total: 38.95 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.90 Total: 7.29 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.94 Total: -114.26 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.09 Total: -39.03 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -71.07 4.24 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116331957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.260 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds