Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 110.53781 * 2 1 4 4 O 1.21295 * 120.00215 * 237.38993 * 3 2 1 5 5 N 1.34780 * 119.99642 * 57.38920 * 3 2 1 6 6 C 1.40160 * 119.99938 * 179.97438 * 5 3 2 7 7 C 1.40418 * 125.97126 * 359.71939 * 6 5 3 8 8 C 1.35241 * 107.86181 * 179.82649 * 7 6 5 9 9 N 1.34966 * 107.86567 * 0.42914 * 8 7 6 10 10 C 1.46498 * 125.97685 * 179.76241 * 9 8 7 11 11 C 1.50701 * 109.46869 * 124.98320 * 10 9 8 12 12 H 1.07994 * 120.00239 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99721 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99777 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47446 * 59.99540 * 15 13 11 17 17 H 1.48499 * 109.46820 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46774 * 299.99176 * 15 13 11 19 19 N 1.31216 * 125.97839 * 180.02562 * 6 5 3 20 20 C 1.54633 * 110.48613 * 237.39282 * 2 1 3 21 21 C 1.54480 * 101.76342 * 216.52193 * 20 2 1 22 22 N 1.46768 * 105.55098 * 25.37218 * 21 20 2 23 23 C 1.34570 * 111.21385 * 343.09005 * 22 21 20 24 24 O 1.21276 * 124.91592 * 180.34319 * 23 22 21 25 25 H 1.09008 * 109.46479 * 182.61109 * 1 2 3 26 26 H 1.08992 * 109.46923 * 302.60639 * 1 2 3 27 27 H 1.08998 * 109.46942 * 62.61325 * 1 2 3 28 28 H 0.96993 * 120.00499 * 0.02562 * 5 3 2 29 29 H 1.08002 * 126.06600 * 359.97438 * 7 6 5 30 30 H 1.08006 * 126.06366 * 180.15964 * 8 7 6 31 31 H 1.08999 * 109.47148 * 244.98269 * 10 9 8 32 32 H 1.09002 * 109.47127 * 4.98665 * 10 9 8 33 33 H 0.97005 * 119.99407 * 180.02562 * 14 13 11 34 34 H 1.08994 * 110.97090 * 98.40217 * 20 2 1 35 35 H 1.08997 * 110.96878 * 334.63867 * 20 2 1 36 36 H 1.09002 * 110.24648 * 144.41594 * 21 20 2 37 37 H 1.09002 * 110.24453 * 266.32950 * 21 20 2 38 38 H 0.96991 * 124.35055 * 163.02937 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.8016 1.7806 -0.8848 5 7 1.7060 2.2629 0.9833 6 6 2.1981 3.5753 0.9836 7 6 3.0658 4.1310 0.0297 8 6 3.3002 5.4158 0.3808 9 7 2.6173 5.6655 1.5179 10 6 2.5950 6.9359 2.2471 11 6 1.1685 7.3887 2.4236 12 1 0.3595 6.7903 2.0315 13 6 0.8963 8.5676 3.0849 14 7 1.8815 9.2966 3.5619 15 14 -0.8720 9.1285 3.3044 16 1 -1.6245 8.1044 4.0724 17 1 -0.8945 10.4164 4.0434 18 1 -1.5024 9.3106 1.9723 19 7 1.9331 4.4977 1.8784 20 6 2.0712 -0.7806 -1.2202 21 6 3.3200 -1.4685 -0.6254 22 7 3.0586 -1.5817 0.8144 23 6 2.0595 -0.7638 1.1936 24 8 1.6447 -0.6544 2.3280 25 1 -0.3632 -1.0267 0.0468 26 1 -0.3633 0.5537 0.8656 27 1 -0.3633 0.4727 -0.9125 28 1 1.1123 1.9675 1.6910 29 1 3.4719 3.6233 -0.8327 30 1 3.9266 6.1163 -0.1516 31 1 3.0573 6.8017 3.2250 32 1 3.1478 7.6879 1.6839 33 1 1.6899 10.1258 4.0274 34 1 2.3471 -0.1013 -2.0268 35 1 1.3462 -1.5182 -1.5642 36 1 3.4504 -2.4579 -1.0639 37 1 4.2062 -0.8587 -0.8011 38 1 3.5429 -2.1705 1.4139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119101960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -12.203339 kcal Electronic energy + Delta-G solvation = -23089.696491 eV Core-core repulsion = 19547.045100 eV Total energy + Delta-G solvation = -3542.651391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.62209 -41.85178 -39.98459 -37.54345 -36.26733 -35.35779 -34.28306 -32.68273 -31.00829 -29.74640 -28.63685 -26.66584 -25.32728 -24.04623 -22.76939 -22.32262 -21.46120 -20.25560 -18.73959 -18.67935 -18.35094 -18.12413 -17.09876 -16.74087 -16.55440 -16.10061 -15.90926 -15.43672 -15.10255 -14.92088 -14.72792 -14.51445 -14.25362 -13.86420 -13.74453 -13.60171 -13.39396 -13.24194 -12.94450 -12.73549 -12.32239 -12.31031 -12.18903 -12.08175 -11.65636 -11.43522 -11.16401 -10.84547 -10.73279 -10.15205 -9.81124 -9.18138 -8.34687 -6.48811 0.75479 1.12507 1.29571 1.37673 1.40002 1.48828 1.52874 2.10707 2.24369 2.33484 2.41876 2.97306 3.10693 3.26149 3.45554 3.79802 3.97178 4.06334 4.22821 4.40547 4.64607 4.68483 4.71810 4.77707 4.85631 4.89502 4.97944 5.00230 5.08761 5.12571 5.14954 5.54831 5.68517 5.77203 5.86016 5.88747 6.11229 6.26223 6.62428 6.83903 7.00629 7.08103 7.21124 8.73035 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.003417 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.794719 B = 8192.628857 C = 8570.336155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.540 3.460 4 O -0.523 6.523 5 N -0.624 5.624 6 C 0.260 3.740 7 C -0.290 4.290 8 C 0.058 3.942 9 N -0.342 5.342 10 C 0.272 3.728 11 C -0.550 4.550 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.920 5.920 15 Si 0.972 3.028 16 H -0.275 1.275 17 H -0.272 1.272 18 H -0.268 1.268 19 N -0.349 5.349 20 C -0.110 4.110 21 C 0.095 3.905 22 N -0.715 5.715 23 C 0.522 3.478 24 O -0.559 6.559 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.419 0.581 29 H 0.174 0.826 30 H 0.206 0.794 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.273 0.727 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -23.014 -12.631 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C 0.326 3.674 4 O -0.397 6.397 5 N -0.272 5.272 6 C 0.006 3.994 7 C -0.321 4.321 8 C -0.090 4.090 9 N -0.124 5.124 10 C 0.153 3.847 11 C -0.588 4.588 12 H 0.070 0.930 13 C -0.182 4.182 14 N -0.559 5.559 15 Si 0.795 3.205 16 H -0.200 1.200 17 H -0.197 1.197 18 H -0.192 1.192 19 N -0.180 5.180 20 C -0.148 4.148 21 C -0.028 4.028 22 N -0.370 5.370 23 C 0.306 3.694 24 O -0.437 6.437 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.255 0.745 29 H 0.192 0.808 30 H 0.222 0.778 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.329 -22.095 -11.533 24.959 hybrid contribution -0.282 0.236 0.607 0.710 sum 1.046 -21.859 -10.926 24.460 Atomic orbital electron populations 1.21798 0.88045 1.05249 1.03939 1.21673 1.00825 0.90376 0.98766 1.20413 0.80098 0.86667 0.80254 1.90605 1.35421 1.77376 1.36270 1.42676 1.48720 1.07313 1.28525 1.19497 0.97720 0.86456 0.95744 1.21729 1.09676 0.94761 1.05906 1.23237 0.98225 0.98177 0.89403 1.48872 1.34094 1.09536 1.19870 1.19357 0.98261 0.75535 0.91503 1.21376 0.92169 1.07008 1.38291 0.92987 1.25746 1.02398 0.95845 0.94163 1.69989 1.33418 1.14988 1.37493 0.85401 0.78743 0.77615 0.78693 1.20043 1.19664 1.19246 1.77286 1.22873 0.93278 1.24561 1.22855 0.97607 0.99465 0.94849 1.22405 0.98312 1.03871 0.78240 1.46228 1.35586 1.42776 1.12420 1.20605 0.80304 0.80141 0.88368 1.90777 1.62633 1.67542 1.22744 0.88432 0.92470 0.89220 0.74450 0.80843 0.77763 0.96248 0.92021 0.91780 0.87391 0.85516 0.85711 0.90867 0.73710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.32 71.98 0.60 -1.50 16 2 C -0.11 -2.09 0.75 -52.93 -0.04 -2.13 16 3 C 0.54 15.14 6.53 87.66 0.57 15.71 16 4 O -0.52 -16.08 12.60 -3.07 -0.04 -16.11 16 5 N -0.62 -21.19 5.32 -307.50 -1.64 -22.83 16 6 C 0.26 10.90 8.11 133.33 1.08 11.98 16 7 C -0.29 -11.31 9.61 22.11 0.21 -11.10 16 8 C 0.06 2.30 11.43 83.52 0.96 3.26 16 9 N -0.34 -16.47 3.67 -351.84 -1.29 -17.76 16 10 C 0.27 14.42 6.26 85.63 0.54 14.95 16 11 C -0.55 -31.68 9.24 25.60 0.24 -31.45 16 12 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 13 C 0.02 1.06 5.46 84.66 0.46 1.53 16 14 N -0.92 -52.84 13.29 21.45 0.28 -52.56 16 15 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 N -0.35 -17.12 12.42 -54.44 -0.68 -17.79 16 20 C -0.11 -1.19 6.02 31.65 0.19 -1.00 16 21 C 0.09 0.87 7.77 86.83 0.68 1.55 16 22 N -0.72 -10.42 6.25 -459.60 -2.87 -13.29 16 23 C 0.52 11.63 7.15 87.87 0.63 12.26 16 24 O -0.56 -17.09 17.87 -3.02 -0.05 -17.15 16 25 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.06 1.11 7.44 -2.39 -0.02 1.09 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.42 13.64 8.12 -92.71 -0.75 12.89 16 29 H 0.17 6.23 5.92 -2.91 -0.02 6.22 16 30 H 0.21 6.25 8.06 -2.91 -0.02 6.22 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 3.15 8.07 -2.39 -0.02 3.13 16 33 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 34 H 0.11 1.35 6.96 -2.39 -0.02 1.33 16 35 H 0.13 0.56 7.91 -2.39 -0.02 0.54 16 36 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.42 4.78 8.96 -92.72 -0.83 3.95 16 Total: -1.00 -75.74 327.20 1.38 -74.35 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.47 Total: 22.78 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.11 Total: 14.08 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.19 Total: -124.23 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.09 Total: -33.26 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.74 1.38 -74.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119101960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.149 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds