Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48504 * 109.47164 * 240.00522 * 3 2 1 5 5 H 1.48497 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47088 * 120.00761 * 3 2 1 7 7 C 1.38808 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00486 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47337 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99881 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99764 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.50694 * 109.47297 * 180.02562 * 15 13 12 17 17 C 1.32573 * 120.00297 * 127.45824 * 16 15 13 18 18 C 1.47800 * 119.99582 * 7.49618 * 17 16 15 19 19 C 1.39555 * 120.11300 * 218.73461 * 18 17 16 20 20 C 1.37932 * 119.87816 * 179.74127 * 19 18 17 21 21 C 1.38568 * 120.11758 * 0.53888 * 20 19 18 22 22 F 1.35099 * 119.88709 * 179.74095 * 21 20 19 23 23 C 1.38574 * 120.23559 * 359.71765 * 21 20 19 24 24 C 1.37928 * 120.11803 * 0.02562 * 23 21 20 25 25 H 0.97002 * 120.00150 * 359.97438 * 1 2 3 26 26 H 0.97006 * 120.00060 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46787 * 60.00222 * 10 9 7 28 28 H 1.09003 * 109.46946 * 300.01046 * 10 9 7 29 29 H 1.09000 * 109.47369 * 60.00127 * 11 10 9 30 30 H 1.08999 * 109.47104 * 300.00148 * 11 10 9 31 31 H 0.96998 * 120.00318 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.47172 * 59.99695 * 15 13 12 33 33 H 1.08999 * 109.47024 * 299.99886 * 15 13 12 34 34 H 1.08004 * 119.99698 * 307.74073 * 16 15 13 35 35 H 1.07996 * 120.00188 * 187.49338 * 17 16 15 36 36 H 1.08000 * 120.06095 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.93836 * 180.25326 * 20 19 18 38 38 H 1.08001 * 119.94494 * 179.97438 * 23 21 20 39 39 H 1.07999 * 120.06757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2123 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8196 -0.0012 12 7 1.7966 -6.0884 -0.0006 13 6 1.1228 -7.2556 -0.0005 14 8 -0.0901 -7.2556 -0.0013 15 6 1.8763 -8.5607 0.0008 16 6 0.8971 -9.7062 0.0000 17 6 0.9981 -10.6640 -0.9109 18 6 2.1631 -10.6995 -1.8198 19 6 1.9963 -11.0574 -3.1583 20 6 3.0860 -11.0838 -4.0035 21 6 4.3464 -10.7666 -3.5230 22 9 5.4114 -10.7990 -4.3536 23 6 4.5185 -10.4158 -2.1934 24 6 3.4347 -10.3811 -1.3410 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7144 0.8895 28 1 2.6850 -3.7144 -0.8905 29 1 0.4377 -4.7618 -0.8914 30 1 0.4370 -4.7621 0.8886 31 1 2.7666 -6.0884 0.0005 32 1 2.5023 -8.6180 0.8912 33 1 2.5036 -8.6189 -0.8887 34 1 0.1102 -9.7444 0.7388 35 1 0.2292 -11.4184 -0.9889 36 1 1.0150 -11.3087 -3.5328 37 1 2.9574 -11.3566 -5.0405 38 1 5.5030 -10.1698 -1.8238 39 1 3.5696 -10.1072 -0.3051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130171178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -52.745272 kcal Electronic energy + Delta-G solvation = -21483.188109 eV Core-core repulsion = 17918.858726 eV Total energy + Delta-G solvation = -3564.329383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88461 -40.93846 -40.01749 -37.36293 -35.91606 -35.45787 -33.19152 -32.23572 -31.22630 -29.71592 -28.16400 -25.54307 -23.98998 -23.63553 -23.05517 -21.64857 -20.15288 -19.33275 -18.62882 -18.10800 -17.35787 -16.99310 -16.85333 -16.61396 -16.57217 -16.20479 -15.85564 -15.36446 -15.10124 -14.87083 -14.75813 -14.53743 -14.24764 -14.18008 -13.76880 -13.16946 -13.07002 -13.01676 -12.81646 -12.60432 -12.52024 -12.12535 -11.96263 -11.95605 -11.86447 -11.04281 -10.98264 -10.58924 -10.13156 -10.02227 -9.11143 -9.07365 -7.97299 -5.28936 -0.10492 0.28514 1.29367 1.48321 1.52023 1.58188 1.65807 2.22219 2.58488 2.69786 3.31368 3.36824 3.71379 3.78362 3.84298 3.96004 4.00696 4.05642 4.18211 4.21678 4.32615 4.41731 4.44038 4.57707 4.59549 4.85696 4.98119 5.03297 5.06967 5.13240 5.17851 5.20745 5.38963 5.40140 5.48776 5.63920 5.78023 5.93816 6.23430 6.57525 7.27360 7.29596 8.01617 8.24407 9.26281 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002507 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.207002 B =11164.825763 C =12162.157072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.127 3.873 12 N -0.713 5.713 13 C 0.508 3.492 14 O -0.589 6.589 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.074 4.074 19 C -0.087 4.087 20 C -0.159 4.159 21 C 0.072 3.928 22 F -0.152 7.152 23 C -0.154 4.154 24 C -0.089 4.089 25 H 0.253 0.747 26 H 0.373 0.627 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.418 0.582 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -27.758 -2.944 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.366 5.366 13 C 0.297 3.703 14 O -0.469 6.469 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.140 4.140 18 C -0.074 4.074 19 C -0.105 4.105 20 C -0.177 4.177 21 C 0.053 3.947 22 F -0.131 7.131 23 C -0.173 4.173 24 C -0.106 4.106 25 H 0.061 0.939 26 H 0.205 0.795 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.255 0.745 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.999 -27.647 -2.982 29.227 hybrid contribution 0.212 1.155 -0.326 1.219 sum 9.210 -26.492 -3.308 28.242 Atomic orbital electron populations 1.69831 1.06870 1.26403 1.59080 1.25682 0.96431 1.01512 1.03289 0.85123 0.77117 0.78581 0.78385 1.20110 1.22299 1.20030 1.19625 0.91746 0.84887 1.41896 0.89880 1.42438 1.05755 1.01161 1.89803 1.20854 0.93603 0.84081 0.99241 1.21119 0.94811 0.83010 1.00870 1.45785 1.11251 1.04673 1.74883 1.21366 0.87905 0.86371 0.74684 1.90700 1.16406 1.88363 1.51418 1.21268 0.98636 0.88367 1.07350 1.22912 0.98992 0.93514 0.98536 1.21711 0.96863 1.00754 0.94642 1.19360 0.94034 1.00034 0.94008 1.21382 0.99209 0.97539 0.92406 1.21306 0.91161 1.03168 1.02101 1.18145 0.83905 1.03563 0.89095 1.91477 1.55402 1.94321 1.71854 1.21350 1.01697 1.02606 0.91608 1.21576 0.90470 0.97452 1.01143 0.93870 0.79505 0.94292 0.94615 0.93291 0.92913 0.74492 0.84216 0.86113 0.86280 0.84223 0.83353 0.83599 0.82828 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -38.17 5.60 -343.46 -1.92 -40.10 16 10 C 0.15 5.63 6.37 86.38 0.55 6.18 16 11 C 0.13 4.31 5.79 86.38 0.50 4.81 16 12 N -0.71 -17.55 5.56 -463.05 -2.57 -20.12 16 13 C 0.51 12.97 7.82 87.66 0.69 13.65 16 14 O -0.59 -20.96 16.02 -3.04 -0.05 -21.01 16 15 C -0.12 -1.73 4.47 29.10 0.13 -1.60 16 16 C -0.12 -1.93 8.71 24.53 0.21 -1.72 16 17 C -0.12 -1.68 9.78 23.65 0.23 -1.44 16 18 C -0.07 -1.02 5.13 -20.11 -0.10 -1.12 16 19 C -0.09 -1.20 9.78 22.51 0.22 -0.98 16 20 C -0.16 -2.33 10.01 22.28 0.22 -2.11 16 21 C 0.07 1.19 7.30 22.43 0.16 1.35 16 22 F -0.15 -2.91 17.26 44.97 0.78 -2.14 16 23 C -0.15 -2.01 10.01 22.28 0.22 -1.78 16 24 C -0.09 -1.02 7.31 22.51 0.16 -0.86 16 25 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.37 20.64 7.67 -92.70 -0.71 19.93 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.42 7.17 8.47 -92.71 -0.79 6.38 16 32 H 0.14 1.10 8.01 -2.39 -0.02 1.08 16 33 H 0.12 1.53 4.83 -2.39 -0.01 1.52 16 34 H 0.12 2.09 8.04 -2.91 -0.02 2.06 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.16 1.06 6.40 -2.91 -0.02 1.04 16 Total: -1.00 -73.90 340.73 2.64 -71.27 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.41 Total: 26.82 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.51 Total: -2.56 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.21 Total: -120.06 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.90 2.64 -71.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130171178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.521 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds