Wall clock time and date at job start Tue Mar 31 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00075 * 2 1 4 4 H 1.48507 * 109.47582 * 270.00269 * 3 2 1 5 5 H 1.48498 * 109.47457 * 30.00037 * 3 2 1 6 6 H 1.48506 * 109.47228 * 150.00147 * 3 2 1 7 7 C 1.38809 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00013 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47183 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99791 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00207 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00086 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.26564 * 60.62151 * 15 13 12 17 17 C 1.54603 * 110.30988 * 182.77303 * 15 13 12 18 18 C 1.54349 * 102.27090 * 92.56616 * 17 15 13 19 19 C 1.51376 * 105.25701 * 26.37518 * 18 17 15 20 20 C 1.38465 * 130.36842 * 162.78666 * 19 18 17 21 21 C 1.38322 * 120.19373 * 179.97438 * 20 19 18 22 22 F 1.35098 * 120.05774 * 179.97438 * 21 20 19 23 23 C 1.38483 * 119.88367 * 359.97438 * 21 20 19 24 24 C 1.38058 * 119.90431 * 0.02562 * 23 21 20 25 25 C 1.38234 * 109.75588 * 342.76479 * 19 18 17 26 26 H 0.97000 * 119.99689 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99954 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46976 * 60.00217 * 10 9 7 29 29 H 1.09001 * 109.46916 * 300.00856 * 10 9 7 30 30 H 1.08996 * 109.46696 * 60.00145 * 11 10 9 31 31 H 1.09002 * 109.46939 * 300.00016 * 11 10 9 32 32 H 0.96999 * 120.00281 * 359.97438 * 12 11 10 33 33 H 1.08999 * 110.90351 * 334.37227 * 17 15 13 34 34 H 1.08995 * 110.85503 * 210.74037 * 17 15 13 35 35 H 1.09002 * 110.30534 * 267.40009 * 18 17 15 36 36 H 1.08997 * 110.29932 * 145.34584 * 18 17 15 37 37 H 1.07998 * 119.90498 * 359.95582 * 20 19 18 38 38 H 1.08002 * 120.04381 * 180.02562 * 23 21 20 39 39 H 1.08007 * 119.87277 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 7 6.3487 -3.4602 -0.0017 13 6 7.6965 -3.4602 -0.0013 14 8 8.3029 -2.4100 -0.0009 15 6 8.4499 -4.7653 -0.0013 16 1 8.2045 -5.3429 -0.8926 17 6 9.9724 -4.5060 0.0693 18 6 10.2433 -4.5543 1.5881 19 6 9.1551 -5.4383 2.1589 20 6 9.0734 -6.0845 3.3808 21 6 7.9640 -6.8508 3.6897 22 9 7.8874 -7.4805 4.8824 23 6 6.9320 -6.9713 2.7741 24 6 7.0139 -6.3268 1.5559 25 6 8.1246 -5.5597 1.2455 26 1 -0.4850 0.8401 -0.0004 27 1 3.8645 -0.3622 -0.0007 28 1 3.8484 -3.0427 -0.8908 29 1 3.8489 -3.0424 0.8891 30 1 5.8796 -1.6199 0.8889 31 1 5.8796 -1.6198 -0.8911 32 1 5.8637 -4.3002 -0.0016 33 1 10.2192 -3.5252 -0.3372 34 1 10.5242 -5.2910 -0.4478 35 1 10.1806 -3.5535 2.0155 36 1 11.2240 -4.9877 1.7837 37 1 9.8783 -5.9903 4.0946 38 1 6.0644 -7.5686 3.0128 39 1 6.2085 -6.4208 0.8424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131418418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:05 Heat of formation + Delta-G solvation = -47.464219 kcal Electronic energy + Delta-G solvation = -22455.736778 eV Core-core repulsion = 18891.636398 eV Total energy + Delta-G solvation = -3564.100380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.16957 -41.02972 -39.01464 -36.13711 -35.33750 -34.01774 -32.06859 -31.35734 -29.12367 -28.84589 -27.42017 -23.79792 -23.29257 -22.07795 -21.57076 -21.35573 -19.99809 -17.95275 -17.46660 -17.25878 -16.99036 -16.11901 -15.86412 -15.72778 -15.13296 -14.80403 -14.60464 -14.38274 -13.93005 -13.76927 -13.73343 -13.39915 -13.17651 -12.71275 -12.64902 -12.30415 -11.93534 -11.65021 -11.54786 -11.52580 -11.28873 -11.14995 -10.96929 -10.87296 -10.18782 -10.09573 -9.65004 -9.27701 -9.08568 -8.92671 -8.73138 -7.33284 -5.82497 -3.20099 0.74743 0.87384 2.54468 3.02951 3.29554 3.36442 3.39988 3.44317 3.75364 4.08386 4.13384 4.49829 4.55291 4.56553 4.66016 4.80166 4.88121 4.94651 5.22886 5.29359 5.34066 5.37802 5.41872 5.53847 5.57124 5.62408 5.64169 5.75181 5.76962 5.84253 5.92477 5.96633 6.15484 6.33768 6.52940 6.54758 6.57513 7.46466 7.90644 8.16426 8.35533 9.13065 9.85398 10.03577 11.35349 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.003359 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.639603 B = 8334.567070 C = 9255.480779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.719 5.719 13 C 0.523 3.477 14 O -0.537 6.537 15 C -0.069 4.069 16 H 0.111 0.889 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.056 4.056 20 C -0.145 4.145 21 C 0.104 3.896 22 F -0.138 7.138 23 C -0.152 4.152 24 C -0.070 4.070 25 C -0.107 4.107 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.775 -16.146 2.702 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.370 5.370 13 C 0.308 3.692 14 O -0.413 6.413 15 C -0.090 4.090 16 H 0.129 0.871 17 C -0.143 4.143 18 C -0.121 4.121 19 C -0.056 4.056 20 C -0.164 4.164 21 C 0.085 3.915 22 F -0.117 7.117 23 C -0.171 4.171 24 C -0.088 4.088 25 C -0.108 4.108 26 H 0.071 0.929 27 H 0.196 0.804 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.944 -15.465 2.749 26.986 hybrid contribution 0.049 0.611 0.355 0.708 sum 21.993 -14.854 3.104 26.720 Atomic orbital electron populations 1.69699 1.05118 1.26015 1.57039 1.24668 0.95259 0.97315 1.01609 0.86548 0.79288 0.84783 0.77939 1.20888 1.21554 1.20196 1.19004 0.80206 0.94879 1.43835 0.89093 1.42529 1.04160 1.01828 1.91353 1.20729 0.87643 0.90290 0.99265 1.21618 0.92511 0.85087 1.02464 1.45868 1.06137 1.10181 1.74797 1.20217 0.82367 0.90605 0.76005 1.90692 1.68006 1.33047 1.49602 1.20851 0.97203 0.93600 0.97394 0.87119 1.22305 0.91961 1.04160 0.95837 1.21127 0.96593 0.99086 0.95291 1.20449 0.96693 0.95741 0.92734 1.20536 0.98454 0.99616 0.97768 1.17537 0.95959 0.95940 0.82057 1.91511 1.96482 1.80193 1.43516 1.21045 0.99095 1.03027 0.93892 1.20499 0.96927 0.95217 0.96162 1.20274 0.95415 0.98923 0.96143 0.92913 0.80384 0.94892 0.94988 0.91367 0.91231 0.76634 0.88260 0.90074 0.89209 0.90052 0.84779 0.84167 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.11 27.73 -169.99 -4.71 17.40 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.77 5.41 -59.91 -0.32 -18.09 16 10 C 0.15 2.72 6.37 -4.04 -0.03 2.70 16 11 C 0.11 1.69 5.79 -4.04 -0.02 1.66 16 12 N -0.72 -8.98 5.48 -60.30 -0.33 -9.31 16 13 C 0.52 6.68 7.17 -10.99 -0.08 6.60 16 14 O -0.54 -8.78 15.46 5.56 0.09 -8.70 16 15 C -0.07 -0.62 3.27 -91.75 -0.30 -0.93 16 16 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.11 -0.85 6.41 -25.18 -0.16 -1.02 16 18 C -0.08 -0.69 6.75 -26.84 -0.18 -0.88 16 19 C -0.06 -0.53 6.14 -104.21 -0.64 -1.17 16 20 C -0.14 -1.36 10.02 -39.47 -0.40 -1.76 16 21 C 0.10 1.04 7.30 -39.46 -0.29 0.76 16 22 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 23 C -0.15 -1.35 10.03 -39.56 -0.40 -1.75 16 24 C -0.07 -0.59 9.66 -39.55 -0.38 -0.97 16 25 C -0.11 -0.99 5.34 -104.19 -0.56 -1.54 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.40 3.94 7.75 -40.82 -0.32 3.62 16 33 H 0.10 0.94 6.95 -51.93 -0.36 0.58 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.81 7.76 -52.48 -0.41 0.41 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -33.76 331.88 -8.28 -42.04 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.13 Total: 6.76 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.68 Total: -5.33 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.12 Total: -55.71 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.76 -8.28 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131418418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.427 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds