Wall clock time and date at job start Tue Mar 31 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00075 * 2 1 4 4 H 1.48507 * 109.47582 * 270.00269 * 3 2 1 5 5 H 1.48498 * 109.47457 * 30.00037 * 3 2 1 6 6 H 1.48506 * 109.47228 * 150.00147 * 3 2 1 7 7 C 1.38809 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00013 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47183 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99791 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00207 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00086 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.26564 * 60.62151 * 15 13 12 17 17 C 1.54603 * 110.30988 * 182.77303 * 15 13 12 18 18 C 1.54349 * 102.27090 * 92.56616 * 17 15 13 19 19 C 1.51376 * 105.25701 * 26.37518 * 18 17 15 20 20 C 1.38465 * 130.36842 * 162.78666 * 19 18 17 21 21 C 1.38322 * 120.19373 * 179.97438 * 20 19 18 22 22 F 1.35098 * 120.05774 * 179.97438 * 21 20 19 23 23 C 1.38483 * 119.88367 * 359.97438 * 21 20 19 24 24 C 1.38058 * 119.90431 * 0.02562 * 23 21 20 25 25 C 1.38234 * 109.75588 * 342.76479 * 19 18 17 26 26 H 0.97000 * 119.99689 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99954 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46976 * 60.00217 * 10 9 7 29 29 H 1.09001 * 109.46916 * 300.00856 * 10 9 7 30 30 H 1.08996 * 109.46696 * 60.00145 * 11 10 9 31 31 H 1.09002 * 109.46939 * 300.00016 * 11 10 9 32 32 H 0.96999 * 120.00281 * 359.97438 * 12 11 10 33 33 H 1.08999 * 110.90351 * 334.37227 * 17 15 13 34 34 H 1.08995 * 110.85503 * 210.74037 * 17 15 13 35 35 H 1.09002 * 110.30534 * 267.40009 * 18 17 15 36 36 H 1.08997 * 110.29932 * 145.34584 * 18 17 15 37 37 H 1.07998 * 119.90498 * 359.95582 * 20 19 18 38 38 H 1.08002 * 120.04381 * 180.02562 * 23 21 20 39 39 H 1.08007 * 119.87277 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 7 6.3487 -3.4602 -0.0017 13 6 7.6965 -3.4602 -0.0013 14 8 8.3029 -2.4100 -0.0009 15 6 8.4499 -4.7653 -0.0013 16 1 8.2045 -5.3429 -0.8926 17 6 9.9724 -4.5060 0.0693 18 6 10.2433 -4.5543 1.5881 19 6 9.1551 -5.4383 2.1589 20 6 9.0734 -6.0845 3.3808 21 6 7.9640 -6.8508 3.6897 22 9 7.8874 -7.4805 4.8824 23 6 6.9320 -6.9713 2.7741 24 6 7.0139 -6.3268 1.5559 25 6 8.1246 -5.5597 1.2455 26 1 -0.4850 0.8401 -0.0004 27 1 3.8645 -0.3622 -0.0007 28 1 3.8484 -3.0427 -0.8908 29 1 3.8489 -3.0424 0.8891 30 1 5.8796 -1.6199 0.8889 31 1 5.8796 -1.6198 -0.8911 32 1 5.8637 -4.3002 -0.0016 33 1 10.2192 -3.5252 -0.3372 34 1 10.5242 -5.2910 -0.4478 35 1 10.1806 -3.5535 2.0155 36 1 11.2240 -4.9877 1.7837 37 1 9.8783 -5.9903 4.0946 38 1 6.0644 -7.5686 3.0128 39 1 6.2085 -6.4208 0.8424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131418418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:05 Heat of formation + Delta-G solvation = -69.675841 kcal Electronic energy + Delta-G solvation = -22456.699946 eV Core-core repulsion = 18891.636398 eV Total energy + Delta-G solvation = -3565.063548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94172 -41.82772 -39.94697 -37.54004 -36.21427 -35.52754 -33.53868 -32.61112 -30.18806 -29.74798 -28.46549 -25.41198 -24.02337 -23.35858 -22.85035 -22.09017 -20.95295 -19.82526 -18.50486 -18.04239 -17.72868 -17.06993 -16.93284 -16.63400 -16.32395 -16.18343 -15.82090 -15.47211 -15.33280 -14.85788 -14.72282 -14.57318 -14.29005 -13.89789 -13.48651 -13.33358 -13.25229 -12.96711 -12.72038 -12.65298 -12.55675 -12.15436 -12.08616 -11.94973 -11.83519 -11.80859 -11.12924 -11.04071 -10.16496 -9.94228 -9.47183 -9.37023 -8.05757 -5.41095 0.03334 0.21013 1.38765 1.40392 1.47609 1.56750 2.05744 2.46261 2.54274 3.06688 3.26225 3.40850 3.45420 3.65365 3.80412 3.92115 3.94590 4.05138 4.15911 4.18792 4.23599 4.33456 4.54360 4.60757 4.71669 4.71965 4.92584 4.98637 5.02031 5.08733 5.09497 5.14613 5.19622 5.30347 5.38685 5.48167 5.71996 5.85671 6.17270 6.49574 7.02770 7.18584 7.77338 7.94733 9.15077 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.003359 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.639603 B = 8334.567070 C = 9255.480779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.711 5.711 13 C 0.521 3.479 14 O -0.576 6.576 15 C -0.061 4.061 16 H 0.142 0.858 17 C -0.103 4.103 18 C -0.084 4.084 19 C -0.066 4.066 20 C -0.153 4.153 21 C 0.086 3.914 22 F -0.148 7.148 23 C -0.157 4.157 24 C -0.070 4.070 25 C -0.113 4.113 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.414 0.586 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.562 -16.965 2.130 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.180 1.180 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.363 5.363 13 C 0.308 3.692 14 O -0.455 6.455 15 C -0.082 4.082 16 H 0.159 0.841 17 C -0.141 4.141 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.171 4.171 21 C 0.067 3.933 22 F -0.126 7.126 23 C -0.176 4.176 24 C -0.087 4.087 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.199 0.801 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 23.773 -16.344 2.179 28.931 hybrid contribution -0.503 0.743 0.549 1.052 sum 23.270 -15.601 2.728 28.148 Atomic orbital electron populations 1.69866 1.07031 1.26825 1.59267 1.25470 0.96092 1.01179 1.02334 0.85464 0.78597 0.79835 0.78242 1.20219 1.22065 1.17988 1.19012 0.82200 0.93797 1.41868 0.91804 1.42558 1.02783 1.03947 1.91259 1.20838 0.88787 0.88228 0.99806 1.21225 0.90939 0.86458 1.01640 1.45737 1.06266 1.09658 1.74618 1.20902 0.82098 0.91553 0.74645 1.90681 1.68712 1.34873 1.51231 1.20878 0.97106 0.91561 0.98642 0.84084 1.22344 0.91638 1.04289 0.95789 1.21143 0.97485 0.98087 0.95364 1.20637 0.97297 0.95886 0.92815 1.20699 0.98725 0.99536 0.98169 1.17807 0.96801 0.96590 0.82151 1.91485 1.96580 1.80456 1.44105 1.21298 0.99259 1.03116 0.93894 1.20795 0.97271 0.94367 0.96310 1.20391 0.95717 0.99165 0.96115 0.93176 0.80071 0.93766 0.94383 0.92637 0.91761 0.74889 0.89813 0.87308 0.90929 0.88006 0.83790 0.82767 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.19 13.97 21.65 0.30 -61.89 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 45.39 27.73 68.60 1.90 47.29 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.15 6.52 99.48 0.65 -10.51 16 7 C -0.24 -13.37 10.47 84.03 0.88 -12.49 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.76 -34.83 5.41 -343.44 -1.86 -36.68 16 10 C 0.15 5.22 6.37 86.38 0.55 5.77 16 11 C 0.12 3.64 5.79 86.38 0.50 4.14 16 12 N -0.71 -16.09 5.48 -463.07 -2.54 -18.62 16 13 C 0.52 12.27 7.17 87.66 0.63 12.90 16 14 O -0.58 -18.27 15.46 -3.02 -0.05 -18.31 16 15 C -0.06 -0.93 3.27 -11.53 -0.04 -0.97 16 16 H 0.14 1.31 8.14 -2.38 -0.02 1.30 16 17 C -0.10 -1.43 6.41 31.60 0.20 -1.23 16 18 C -0.08 -1.25 6.75 30.52 0.21 -1.04 16 19 C -0.07 -1.13 6.14 -19.60 -0.12 -1.25 16 20 C -0.15 -2.68 10.02 22.34 0.22 -2.46 16 21 C 0.09 1.62 7.30 22.35 0.16 1.78 16 22 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 23 C -0.16 -2.50 10.03 22.29 0.22 -2.28 16 24 C -0.07 -0.97 9.66 22.29 0.22 -0.76 16 25 C -0.11 -1.80 5.34 -19.58 -0.10 -1.90 16 26 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.37 16.32 5.53 -92.71 -0.51 15.80 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 6.88 7.75 -92.71 -0.72 6.17 16 33 H 0.08 1.48 6.95 -2.39 -0.02 1.46 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.16 1.33 7.76 -2.91 -0.02 1.31 16 Total: -1.00 -73.19 331.88 2.33 -70.85 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.20 Total: 22.44 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.00 Total: -2.75 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -4.09 Total: -117.20 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -73.19 2.33 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131418418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.177 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds