Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32291 * 120.39879 * 2 1 4 4 C 1.32478 * 120.73641 * 180.28665 * 3 2 1 5 5 N 1.38409 * 119.21688 * 179.73043 * 4 3 2 6 6 C 1.46502 * 119.99712 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.41927 * 324.99987 * 6 5 4 8 8 C 1.52965 * 109.41305 * 84.86316 * 6 5 4 9 9 C 1.53237 * 109.39851 * 183.76937 * 8 6 5 10 10 C 1.51274 * 108.48476 * 305.26686 * 9 8 6 11 11 C 1.37878 * 120.84402 * 231.36828 * 10 9 8 12 12 N 1.31517 * 119.99463 * 180.02562 * 11 10 9 13 13 Si 1.86794 * 120.00483 * 0.02562 * 11 10 9 14 14 H 1.48502 * 109.47022 * 60.00256 * 13 11 10 15 15 H 1.48500 * 109.47381 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47229 * 300.00452 * 13 11 10 17 17 C 1.51263 * 118.29890 * 51.38802 * 10 9 8 18 18 C 1.52966 * 109.41125 * 205.14060 * 6 5 4 19 19 N 1.32509 * 121.56962 * 359.71173 * 4 3 2 20 20 C 1.32261 * 120.73439 * 359.97438 * 19 4 3 21 21 C 1.38581 * 120.39877 * 179.71953 * 2 1 3 22 22 N 1.48003 * 120.72015 * 359.97438 * 21 2 1 23 23 O 1.21801 * 120.00133 * 323.06078 * 22 21 2 24 24 O 1.21798 * 119.99640 * 142.78187 * 22 21 2 25 25 H 1.09003 * 109.47050 * 264.64531 * 1 2 3 26 26 H 1.09007 * 109.47011 * 24.63694 * 1 2 3 27 27 H 1.08995 * 109.47318 * 144.63627 * 1 2 3 28 28 H 0.96998 * 120.00228 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47915 * 303.67875 * 8 6 5 30 30 H 1.08998 * 109.48295 * 63.71776 * 8 6 5 31 31 H 1.08997 * 109.61956 * 185.58305 * 9 8 6 32 32 H 1.09002 * 109.84045 * 65.07322 * 9 8 6 33 33 H 0.96996 * 119.99925 * 180.02562 * 12 11 10 34 34 H 1.09009 * 109.62309 * 188.93873 * 17 10 9 35 35 H 1.08997 * 109.79001 * 68.46347 * 17 10 9 36 36 H 1.09003 * 109.48278 * 296.28048 * 18 6 5 37 37 H 1.09004 * 109.47901 * 56.30319 * 18 6 5 38 38 H 1.08008 * 120.39955 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1410 0.0000 4 6 3.5012 1.1489 -0.0057 5 7 4.1696 2.3608 -0.0112 6 6 5.6344 2.3894 -0.0170 7 1 6.0154 1.5560 0.5732 8 6 6.1396 2.2668 -1.4556 9 6 7.6706 2.2019 -1.4535 10 6 8.2007 3.4072 -0.7087 11 6 9.1617 4.2198 -1.2718 12 7 9.6111 5.2631 -0.6091 13 14 9.8254 3.8389 -2.9758 14 1 8.7120 3.8663 -3.9582 15 1 10.8404 4.8560 -3.3505 16 1 10.4507 2.4920 -2.9739 17 6 7.6497 3.6977 0.6698 18 6 6.1195 3.7066 0.5909 19 7 4.2016 0.0240 -0.0059 20 6 3.5938 -1.1507 0.0002 21 6 2.2083 -1.1953 0.0059 22 7 1.4934 -2.4912 0.0128 23 8 0.4613 -2.6140 0.6477 24 8 1.9346 -3.4334 -0.6206 25 1 -0.3633 -0.0959 1.0232 26 1 -0.3633 0.9342 -0.4284 27 1 -0.3634 -0.8380 -0.5947 28 1 3.6683 3.1912 -0.0112 29 1 5.7389 1.3584 -1.9053 30 1 5.8121 3.1326 -2.0310 31 1 8.0388 2.2144 -2.4793 32 1 8.0016 1.2899 -0.9567 33 1 10.2869 5.8350 -1.0054 34 1 8.0046 4.6713 1.0081 35 1 7.9759 2.9265 1.3676 36 1 5.7925 4.5377 -0.0340 37 1 5.7043 3.8195 1.5924 38 1 4.1700 -2.0642 -0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157054973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = 23.335215 kcal Electronic energy + Delta-G solvation = -23077.283645 eV Core-core repulsion = 19536.173321 eV Total energy + Delta-G solvation = -3541.110324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.42051 -42.23583 -39.40295 -37.66671 -36.53931 -35.67255 -34.22626 -32.67836 -31.53007 -30.31001 -29.06631 -27.13699 -24.84308 -24.52688 -23.37965 -23.03017 -21.36964 -20.39082 -20.10517 -19.46369 -18.86249 -18.03718 -17.94920 -16.70752 -16.44698 -16.40347 -15.83922 -15.15487 -14.72936 -14.60597 -14.46847 -14.13098 -14.02960 -13.74645 -13.59564 -13.46666 -12.93087 -12.78960 -12.66394 -12.57733 -12.25708 -12.20245 -12.08023 -11.98704 -11.92981 -11.75522 -11.46184 -10.93707 -10.66129 -10.64203 -10.56574 -9.59402 -8.20347 -6.14320 -1.13502 -0.33646 0.02906 0.29616 1.37299 1.40434 1.46538 1.48621 2.26956 2.38282 2.60591 2.87573 3.05841 3.18051 3.31335 3.90858 4.05635 4.09442 4.31543 4.41131 4.44950 4.53315 4.65237 4.82328 4.89538 4.92668 5.00534 5.03336 5.16437 5.18196 5.22180 5.43533 5.52793 5.58545 5.67583 5.73354 5.78333 6.09466 6.30484 6.54364 6.83900 6.92062 7.44308 8.90314 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.003457 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.039529 B = 8098.609261 C = 8557.406372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.291 3.709 3 N -0.568 5.568 4 C 0.590 3.410 5 N -0.656 5.656 6 C 0.176 3.824 7 H 0.082 0.918 8 C -0.104 4.104 9 C -0.009 4.009 10 C -0.501 4.501 11 C 0.027 3.973 12 N -0.928 5.928 13 Si 0.938 3.062 14 H -0.267 1.267 15 H -0.295 1.295 16 H -0.268 1.268 17 C 0.011 3.989 18 C -0.104 4.104 19 N -0.568 5.568 20 C 0.274 3.726 21 C -0.239 4.239 22 N 0.054 4.946 23 O -0.150 6.150 24 O -0.185 6.185 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.424 0.576 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.033 0.967 35 H 0.004 0.996 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 -9.448 1.032 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 N -0.294 5.294 4 C 0.234 3.766 5 N -0.286 5.286 6 C 0.072 3.928 7 H 0.100 0.900 8 C -0.143 4.143 9 C -0.047 4.047 10 C -0.520 4.520 11 C -0.171 4.171 12 N -0.567 5.567 13 Si 0.765 3.235 14 H -0.192 1.192 15 H -0.222 1.222 16 H -0.193 1.193 17 C -0.027 4.027 18 C -0.143 4.143 19 N -0.292 5.292 20 C 0.101 3.899 21 C -0.333 4.333 22 N 0.571 4.429 23 O -0.370 6.370 24 O -0.395 6.395 25 H 0.141 0.859 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.325 -7.664 0.997 17.164 hybrid contribution 0.182 -0.540 -0.828 1.005 sum -15.143 -8.203 0.169 17.223 Atomic orbital electron populations 1.21185 0.83789 1.05700 1.06447 1.21802 0.99385 0.84257 0.80673 1.68229 1.07070 1.28397 1.25679 1.19883 0.85207 0.87587 0.83890 1.44991 1.07533 1.03752 1.72298 1.20949 0.75127 0.99471 0.97250 0.89953 1.21799 0.97404 0.99693 0.95448 1.19591 0.92712 0.96373 0.96062 1.20602 1.20408 1.09212 1.01805 1.25524 0.96437 0.94693 1.00493 1.69936 1.30589 1.16678 1.39538 0.85878 0.78274 0.77879 0.81451 1.19215 1.22176 1.19309 1.19268 0.91019 0.97316 0.95072 1.21756 0.98311 0.95141 0.99056 1.68448 1.39070 0.97320 1.24361 1.23293 0.88726 0.97196 0.80663 1.22347 0.95539 0.85174 1.30279 1.43067 1.00099 1.01845 0.97846 1.94503 1.12254 1.89496 1.40722 1.94566 1.70784 1.31844 1.42301 0.85923 0.87526 0.89227 0.73635 0.93302 0.93239 0.95624 0.95608 0.92727 0.94868 0.97739 0.92644 0.92180 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.88 71.24 0.63 -1.01 16 2 C 0.29 6.21 6.82 42.57 0.29 6.50 16 3 N -0.57 -13.86 10.40 -186.04 -1.93 -15.79 16 4 C 0.59 16.02 8.40 261.48 2.20 18.22 16 5 N -0.66 -17.83 5.22 -330.54 -1.72 -19.55 16 6 C 0.18 5.76 2.34 44.97 0.11 5.86 16 7 H 0.08 2.87 7.50 -2.39 -0.02 2.86 16 8 C -0.10 -3.77 5.51 30.66 0.17 -3.60 16 9 C -0.01 -0.39 5.59 30.11 0.17 -0.22 16 10 C -0.50 -24.68 5.51 -16.17 -0.09 -24.77 16 11 C 0.03 1.44 5.46 84.65 0.46 1.90 16 12 N -0.93 -52.27 12.73 21.45 0.27 -52.00 16 13 Si 0.94 41.98 26.80 68.60 1.84 43.82 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 C 0.01 0.52 5.97 30.10 0.18 0.70 16 18 C -0.10 -3.75 5.40 30.66 0.17 -3.59 16 19 N -0.57 -15.45 9.20 -197.97 -1.82 -17.27 16 20 C 0.27 6.18 10.95 84.72 0.93 7.10 16 21 C -0.24 -5.37 6.52 36.55 0.24 -5.13 16 22 N 0.05 1.26 4.18 -46.06 -0.19 1.07 16 23 O -0.15 -3.44 16.92 18.88 0.32 -3.12 16 24 O -0.19 -4.69 19.00 18.89 0.36 -4.33 16 25 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.09 1.26 7.01 -2.39 -0.02 1.24 16 28 H 0.42 10.00 8.72 -92.71 -0.81 9.19 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.08 5.17 -2.39 -0.01 1.07 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 34 H 0.03 1.71 7.07 -2.38 -0.02 1.69 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.21 3.54 8.05 -2.91 -0.02 3.52 16 Total: -1.00 -58.07 320.11 2.86 -55.21 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.30 Total: 10.00 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.45 Total: 1.96 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.40 Total: -103.55 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.68 Total: -7.45 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.84 Total: 43.82 kcal Total: -58.07 2.86 -55.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157054973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.545 kcal (2) G-P(sol) polarization free energy of solvation -58.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds