Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 C 1.52998 * 109.46807 * 95.00377 * 13 12 11 15 15 N 1.46504 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99778 * 179.97438 * 15 14 13 17 17 O 1.21497 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.48284 * 119.99567 * 179.97438 * 16 15 14 19 19 C 1.47492 * 128.70695 * 180.02562 * 18 16 15 20 20 N 1.30643 * 102.71368 * 180.02562 * 19 18 16 21 21 O 1.20843 * 109.62010 * 359.97438 * 20 19 18 22 22 N 1.20898 * 115.90412 * 359.69723 * 21 20 19 23 23 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 24 24 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 25 25 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 27 27 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 28 28 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 29 29 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 30 30 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 31 31 H 1.09007 * 109.47212 * 299.99326 * 14 13 12 32 32 H 1.08991 * 109.47395 * 60.00031 * 14 13 12 33 33 H 0.97001 * 120.00117 * 0.02562 * 15 14 13 34 34 H 1.07996 * 128.64370 * 359.97438 * 19 18 16 35 35 H 1.09000 * 109.31400 * 101.00822 * 23 12 11 36 36 H 1.08997 * 109.31188 * 220.43728 * 23 12 11 37 37 H 1.09009 * 109.77415 * 237.78568 * 24 9 7 38 38 H 1.09001 * 109.77952 * 358.58972 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 6 0.2866 -6.6897 2.6398 15 7 0.2321 -7.7269 3.6730 16 6 -0.4067 -8.8884 3.4289 17 8 -0.9369 -9.0754 2.3519 18 6 -0.4613 -9.9384 4.4745 19 6 -1.1002 -11.2664 4.4155 20 7 -0.8429 -11.7619 5.5967 21 8 -0.2066 -10.9628 6.2422 22 7 0.0532 -9.9215 5.6856 23 6 2.2135 -4.5080 1.0841 24 6 1.8587 -3.6723 -0.1509 25 1 -0.4850 0.8401 0.0004 26 1 -0.7268 -2.5109 0.5011 27 1 0.0584 -1.4121 1.6624 28 1 -0.5058 -3.5065 2.9383 29 1 2.0762 -5.7888 3.4311 30 1 0.5631 -5.0881 4.0537 31 1 -0.7264 -6.3836 2.3781 32 1 0.7868 -7.0843 1.7555 33 1 0.6551 -7.5775 4.5330 34 1 -1.6456 -11.7167 3.5994 35 1 3.1438 -4.1408 1.5174 36 1 2.3432 -5.5488 0.7876 37 1 1.0843 -4.1745 -0.7309 38 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161544418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = 117.675013 kcal Electronic energy + Delta-G solvation = -22190.845550 eV Core-core repulsion = 18653.826107 eV Total energy + Delta-G solvation = -3537.019444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.35907 -40.06123 -37.97164 -35.72886 -35.16903 -34.90897 -33.63086 -31.45297 -29.92091 -28.99071 -26.65824 -25.14701 -24.43014 -23.08788 -22.53708 -21.28785 -20.89798 -19.47702 -18.96580 -17.96260 -17.62134 -16.51150 -15.90425 -15.65283 -15.34851 -15.05153 -14.44321 -14.22372 -14.05880 -13.62587 -13.39783 -13.22568 -12.70023 -12.37811 -12.30738 -12.09022 -11.80991 -11.65893 -11.47302 -11.22664 -11.09344 -10.96157 -10.79856 -10.71682 -10.33694 -10.25996 -9.83118 -9.58860 -9.45883 -8.67035 -7.96833 -6.73950 -5.79969 -3.18573 0.30815 0.88602 2.22650 2.55667 2.86372 2.99874 3.07527 3.37080 3.43923 3.46136 3.54298 4.31399 4.40619 4.48890 4.89690 5.00169 5.03003 5.19296 5.38409 5.49612 5.56411 5.69022 5.87684 5.91384 6.05256 6.12387 6.17888 6.35654 6.52735 6.76169 6.88407 6.94499 7.20349 7.29772 7.37539 7.58599 7.73698 7.85254 7.95274 8.38087 9.19527 9.82425 10.40846 11.30496 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.048688 B = 0.002430 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.946471 B =11518.123930 C =11582.705399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.092 4.092 14 C 0.122 3.878 15 N -0.707 5.707 16 C 0.602 3.398 17 O -0.510 6.510 18 C -0.039 4.039 19 C 0.038 3.962 20 N -0.354 5.354 21 O 0.342 5.658 22 N -0.322 5.322 23 C -0.091 4.091 24 C 0.143 3.857 25 H 0.254 0.746 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.228 0.772 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -19.574 10.645 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.163 4.163 12 C -0.145 4.145 13 C -0.130 4.130 14 C 0.000 4.000 15 N -0.359 5.359 16 C 0.383 3.617 17 O -0.384 6.384 18 C -0.205 4.205 19 C -0.148 4.148 20 N -0.077 5.077 21 O 0.116 5.884 22 N -0.042 5.042 23 C -0.130 4.130 24 C 0.016 3.984 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.668 -19.686 10.931 22.527 hybrid contribution 0.217 1.042 -0.370 1.127 sum -0.451 -18.643 10.561 21.432 Atomic orbital electron populations 1.70016 1.05179 1.25477 1.54811 1.24993 0.95394 0.98294 1.01317 0.86264 0.79041 0.83600 0.77685 1.21432 1.21578 1.20571 1.19170 0.92194 0.84395 1.41718 0.91420 1.44136 1.29269 1.01164 1.57332 1.19716 0.88676 0.94771 0.89761 1.23148 0.96578 0.97284 0.99314 1.20198 0.99457 0.96600 0.98224 1.20923 1.00104 0.93917 0.98080 1.21646 1.01972 0.86317 0.90021 1.45986 1.54937 1.15611 1.19317 1.16471 0.79795 0.80675 0.84735 1.90877 1.45410 1.78937 1.23147 1.26338 1.02057 0.98452 0.93681 1.27779 1.00095 0.90565 0.96316 1.75092 1.10057 1.16275 1.06265 1.85096 1.49822 1.15864 1.37645 1.75382 1.15835 1.05247 1.07746 1.20798 0.96558 0.99012 0.96671 1.20991 0.97349 0.87225 0.92810 0.93625 0.94344 0.89098 0.89017 0.91219 0.91301 0.90476 0.90471 0.75770 0.75517 0.91861 0.92913 0.95777 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.19 11.08 55.49 0.61 -25.58 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.71 9.71 -15.06 -0.15 -6.85 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -14.89 3.01 -173.56 -0.52 -15.41 16 10 C 0.20 4.63 5.23 -5.10 -0.03 4.60 16 11 C -0.14 -2.68 9.47 -35.78 -0.34 -3.02 16 12 C -0.14 -2.36 5.11 -100.99 -0.52 -2.88 16 13 C -0.09 -1.11 5.32 -27.88 -0.15 -1.26 16 14 C 0.12 1.42 5.66 -4.04 -0.02 1.40 16 15 N -0.71 -7.04 5.55 -61.11 -0.34 -7.38 16 16 C 0.60 6.64 7.85 -12.13 -0.10 6.55 16 17 O -0.51 -7.15 17.05 5.37 0.09 -7.06 16 18 C -0.04 -0.36 7.56 -80.07 -0.61 -0.97 16 19 C 0.04 0.28 12.63 -14.29 -0.18 0.10 16 20 N -0.35 -2.89 12.22 30.72 0.38 -2.51 16 21 O 0.34 2.84 11.65 27.27 0.32 3.16 16 22 N -0.32 -2.83 12.13 33.49 0.41 -2.42 16 23 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 24 C 0.14 2.95 6.59 -3.44 -0.02 2.93 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 28 H 0.09 1.51 7.73 -52.48 -0.41 1.10 16 29 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 31 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.41 3.28 8.33 -40.82 -0.34 2.94 16 34 H 0.23 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.86 329.01 -6.30 -37.16 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.82 Total: -0.23 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.36 Total: -1.27 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.54 Total: -53.30 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.41 Total: -3.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.86 -6.30 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161544418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.835 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds