Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 C 1.52998 * 109.46807 * 95.00377 * 13 12 11 15 15 N 1.46504 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99778 * 179.97438 * 15 14 13 17 17 O 1.21497 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.48284 * 119.99567 * 179.97438 * 16 15 14 19 19 C 1.47492 * 128.70695 * 180.02562 * 18 16 15 20 20 N 1.30643 * 102.71368 * 180.02562 * 19 18 16 21 21 O 1.20843 * 109.62010 * 359.97438 * 20 19 18 22 22 N 1.20898 * 115.90412 * 359.69723 * 21 20 19 23 23 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 24 24 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 25 25 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 27 27 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 28 28 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 29 29 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 30 30 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 31 31 H 1.09007 * 109.47212 * 299.99326 * 14 13 12 32 32 H 1.08991 * 109.47395 * 60.00031 * 14 13 12 33 33 H 0.97001 * 120.00117 * 0.02562 * 15 14 13 34 34 H 1.07996 * 128.64370 * 359.97438 * 19 18 16 35 35 H 1.09000 * 109.31400 * 101.00822 * 23 12 11 36 36 H 1.08997 * 109.31188 * 220.43728 * 23 12 11 37 37 H 1.09009 * 109.77415 * 237.78568 * 24 9 7 38 38 H 1.09001 * 109.77952 * 358.58972 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 6 0.2866 -6.6897 2.6398 15 7 0.2321 -7.7269 3.6730 16 6 -0.4067 -8.8884 3.4289 17 8 -0.9369 -9.0754 2.3519 18 6 -0.4613 -9.9384 4.4745 19 6 -1.1002 -11.2664 4.4155 20 7 -0.8429 -11.7619 5.5967 21 8 -0.2066 -10.9628 6.2422 22 7 0.0532 -9.9215 5.6856 23 6 2.2135 -4.5080 1.0841 24 6 1.8587 -3.6723 -0.1509 25 1 -0.4850 0.8401 0.0004 26 1 -0.7268 -2.5109 0.5011 27 1 0.0584 -1.4121 1.6624 28 1 -0.5058 -3.5065 2.9383 29 1 2.0762 -5.7888 3.4311 30 1 0.5631 -5.0881 4.0537 31 1 -0.7264 -6.3836 2.3781 32 1 0.7868 -7.0843 1.7555 33 1 0.6551 -7.5775 4.5330 34 1 -1.6456 -11.7167 3.5994 35 1 3.1438 -4.1408 1.5174 36 1 2.3432 -5.5488 0.7876 37 1 1.0843 -4.1745 -0.7309 38 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161544418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = 97.080781 kcal Electronic energy + Delta-G solvation = -22191.738583 eV Core-core repulsion = 18653.826107 eV Total energy + Delta-G solvation = -3537.912476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.99519 -40.95546 -39.47036 -36.89330 -35.89901 -35.57214 -35.10599 -33.16659 -31.49640 -30.40014 -27.79166 -26.52340 -25.17580 -24.59220 -23.91536 -22.51056 -22.03030 -20.11482 -19.69888 -19.44504 -18.67622 -17.68102 -17.14420 -16.94884 -16.67879 -16.03146 -15.75448 -15.51317 -15.32469 -15.06980 -14.98770 -14.32540 -13.93881 -13.83036 -13.41409 -13.21387 -13.01476 -12.88127 -12.78902 -12.57421 -12.45699 -12.38599 -12.19090 -11.95434 -11.87653 -11.72572 -11.64647 -11.17609 -10.67975 -10.34874 -9.49133 -8.74529 -7.88187 -5.29891 -0.39669 0.29389 1.31371 1.46475 1.47679 1.57500 1.60709 1.74548 2.32171 2.44835 2.51126 2.87065 3.28820 3.64449 3.69207 3.71269 3.95681 4.05440 4.08219 4.28340 4.43093 4.56738 4.57777 4.67581 4.85852 4.89547 4.96809 4.99155 5.18106 5.19636 5.25053 5.42673 5.51672 5.61200 5.87903 6.15062 6.29095 6.34037 6.78389 7.13576 7.31667 7.84004 8.38325 9.20401 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.048688 B = 0.002430 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.946471 B =11518.123930 C =11582.705399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.206 3.794 11 C -0.172 4.172 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.130 3.870 15 N -0.697 5.697 16 C 0.605 3.395 17 O -0.544 6.544 18 C -0.052 4.052 19 C 0.052 3.948 20 N -0.362 5.362 21 O 0.344 5.656 22 N -0.320 5.320 23 C -0.088 4.088 24 C 0.135 3.865 25 H 0.249 0.751 26 H 0.003 0.997 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.419 0.581 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -21.405 12.006 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.192 4.192 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.008 3.992 15 N -0.349 5.349 16 C 0.388 3.612 17 O -0.420 6.420 18 C -0.217 4.217 19 C -0.134 4.134 20 N -0.086 5.086 21 O 0.118 5.882 22 N -0.039 5.039 23 C -0.126 4.126 24 C 0.009 3.991 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.270 0.730 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.690 -21.530 12.321 24.816 hybrid contribution -0.157 1.510 -0.829 1.730 sum 0.533 -20.020 11.492 23.090 Atomic orbital electron populations 1.70193 1.06627 1.25769 1.56238 1.25789 0.96184 1.01493 1.01725 0.85233 0.77985 0.79427 0.77558 1.21157 1.21919 1.19483 1.19528 0.92554 0.85643 1.40972 0.91148 1.44438 1.29467 1.02116 1.58005 1.19361 0.87291 0.95285 0.90012 1.22833 0.99463 0.97049 0.99815 1.20527 0.97165 0.96249 0.98079 1.20817 1.01850 0.92412 0.96779 1.21405 1.01085 0.86454 0.90294 1.45818 1.54608 1.14977 1.19453 1.16589 0.79101 0.80953 0.84576 1.90865 1.46853 1.79645 1.24600 1.26114 1.03268 0.98792 0.93510 1.28231 0.99054 0.89617 0.96502 1.75117 1.10513 1.16353 1.06633 1.85099 1.49804 1.15717 1.37614 1.75366 1.15543 1.05451 1.07583 1.20758 0.96711 1.00193 0.94951 1.21200 0.97083 0.85998 0.94779 0.94160 0.97889 0.92760 0.86807 0.88838 0.89809 0.91822 0.90814 0.74415 0.72961 0.91402 0.89312 0.96189 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 11.08 21.65 0.24 -56.17 16 2 C -0.06 -3.24 5.01 84.86 0.43 -2.82 16 3 Si 0.97 45.19 29.58 68.60 2.03 47.22 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.26 -14.29 9.71 84.03 0.82 -13.47 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 9 N -0.62 -31.43 3.01 -703.02 -2.11 -33.54 16 10 C 0.21 10.15 5.23 85.41 0.45 10.59 16 11 C -0.17 -6.37 9.47 27.10 0.26 -6.12 16 12 C -0.12 -3.65 5.11 -15.14 -0.08 -3.73 16 13 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 14 C 0.13 2.67 5.66 86.38 0.49 3.15 16 15 N -0.70 -11.96 5.55 -465.55 -2.59 -14.55 16 16 C 0.61 12.13 7.85 86.92 0.68 12.81 16 17 O -0.54 -14.45 17.05 -3.71 -0.06 -14.52 16 18 C -0.05 -0.83 7.56 44.30 0.34 -0.50 16 19 C 0.05 0.64 12.63 87.31 1.10 1.74 16 20 N -0.36 -5.15 12.22 -61.42 -0.75 -5.90 16 21 O 0.34 5.03 11.65 140.85 1.64 6.67 16 22 N -0.32 -4.93 12.13 -52.08 -0.63 -5.56 16 23 C -0.09 -2.75 5.95 29.71 0.18 -2.58 16 24 C 0.13 5.51 6.59 86.31 0.57 6.08 16 25 H 0.25 14.46 8.31 -92.70 -0.77 13.68 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.05 3.02 6.41 -2.38 -0.02 3.00 16 28 H 0.11 3.64 7.73 -2.91 -0.02 3.62 16 29 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 30 H 0.08 1.55 7.78 -2.39 -0.02 1.53 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 33 H 0.42 5.36 8.33 -92.71 -0.77 4.59 16 34 H 0.25 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.06 2.31 7.96 -2.39 -0.02 2.29 16 Total: -1.00 -68.86 329.01 3.47 -65.39 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.32 Total: 7.27 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.38 Total: 3.68 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -5.84 Total: -115.72 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 1.58 Total: -7.84 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.86 3.47 -65.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161544418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.471 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds