Wall clock time and date at job start Tue Mar 31 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46961 * 275.28394 * 3 2 1 5 5 H 1.48493 * 109.47193 * 35.28675 * 3 2 1 6 6 H 1.48503 * 109.46989 * 155.28821 * 3 2 1 7 7 C 1.39916 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 30.10225 * 7 2 1 9 9 C 1.40989 * 120.00384 * 210.10075 * 7 2 1 10 10 C 1.41002 * 120.31744 * 34.56151 * 9 7 2 11 11 F 1.35097 * 120.11953 * 359.97438 * 10 9 7 12 12 C 1.37736 * 119.76278 * 179.70194 * 10 9 7 13 13 C 1.38787 * 120.42908 * 0.53101 * 12 10 9 14 14 C 1.38220 * 120.66260 * 359.48304 * 13 12 10 15 15 C 1.38634 * 120.21827 * 0.23419 * 14 13 12 16 16 N 1.38804 * 120.21679 * 180.02562 * 15 14 13 17 17 C 1.46495 * 120.00058 * 359.97438 * 16 15 14 18 18 C 1.53006 * 109.47265 * 180.02562 * 17 16 15 19 19 C 1.56010 * 116.12367 * 303.09461 * 18 17 16 20 20 N 1.50375 * 104.01209 * 200.94539 * 19 18 17 21 21 C 1.49788 * 105.85739 * 357.08400 * 20 19 18 22 22 H 1.09009 * 116.41213 * 165.81184 * 21 20 19 23 23 C 1.56102 * 103.75751 * 295.25918 * 21 20 19 24 24 O 1.44107 * 105.40692 * 71.47527 * 23 21 20 25 25 C 1.57062 * 116.37398 * 185.03761 * 18 17 16 26 26 H 0.96996 * 119.99837 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.78399 * 180.26571 * 12 10 9 28 28 H 1.08006 * 119.66822 * 179.75975 * 13 12 10 29 29 H 1.07998 * 119.89267 * 180.25830 * 14 13 12 30 30 H 0.97003 * 119.99802 * 180.02562 * 16 15 14 31 31 H 1.09005 * 109.47397 * 300.00267 * 17 16 15 32 32 H 1.08994 * 109.47566 * 60.00431 * 17 16 15 33 33 H 1.08998 * 110.33444 * 320.10160 * 19 18 17 34 34 H 1.09003 * 110.33554 * 82.34439 * 19 18 17 35 35 H 1.00903 * 111.14099 * 117.70566 * 20 19 18 36 36 H 1.09002 * 110.25306 * 312.49408 * 23 21 20 37 37 H 1.09001 * 110.33241 * 190.50426 * 23 21 20 38 38 H 1.08999 * 112.44810 * 294.45704 * 25 18 17 39 39 H 1.09003 * 112.44832 * 62.12135 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3789 2.1108 -1.3941 5 1 1.5009 2.6178 0.8087 6 1 3.5921 1.4105 0.5853 7 6 2.0087 -1.2117 0.0005 8 1 1.5779 -2.0841 -0.4682 9 6 3.2760 -1.2938 0.6129 10 6 3.5574 -0.5395 1.7705 11 9 2.6124 0.2680 2.2997 12 6 4.7973 -0.6331 2.3629 13 6 5.7746 -1.4565 1.8217 14 6 5.5180 -2.2035 0.6873 15 6 4.2776 -2.1344 0.0722 16 7 4.0198 -2.8849 -1.0666 17 6 5.0604 -3.7532 -1.6227 18 6 4.5219 -4.4621 -2.8672 19 6 3.2276 -5.3101 -2.6687 20 7 3.2369 -6.2659 -3.8296 21 6 4.4343 -5.8997 -4.6516 22 1 4.7468 -6.6250 -5.4030 23 6 4.1076 -4.4616 -5.1634 24 8 4.2185 -3.6092 -4.0068 25 6 5.4667 -5.5302 -3.5255 26 1 -0.4850 0.8400 0.0004 27 1 5.0118 -0.0587 3.2521 28 1 6.7440 -1.5177 2.2941 29 1 6.2863 -2.8433 0.2790 30 1 3.1508 -2.8339 -1.4947 31 1 5.9283 -3.1523 -1.8943 32 1 5.3505 -4.4950 -0.8787 33 1 3.2675 -5.8459 -1.7203 34 1 2.3459 -4.6702 -2.7064 35 1 3.2941 -7.2223 -3.5131 36 1 3.0944 -4.4247 -5.5637 37 1 4.8253 -4.1587 -5.9258 38 1 6.3727 -5.0864 -3.9381 39 1 5.6859 -6.3614 -2.8553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163206477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:10 Heat of formation + Delta-G solvation = -28.546569 kcal Electronic energy + Delta-G solvation = -23766.424551 eV Core-core repulsion = 20203.144502 eV Total energy + Delta-G solvation = -3563.280049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.51344 -40.91859 -37.99621 -34.64131 -34.36801 -33.52938 -30.93376 -29.94375 -29.47989 -27.70720 -25.42656 -24.99213 -24.53383 -21.40208 -20.92552 -20.36053 -19.19897 -17.71611 -17.28536 -16.67209 -16.28970 -15.52864 -15.46880 -15.22399 -14.31202 -14.09909 -14.05135 -13.94108 -13.77048 -13.55159 -13.10699 -12.77488 -12.69096 -12.45455 -12.06934 -12.01063 -11.62643 -11.55765 -11.44115 -11.33966 -11.05923 -10.86862 -10.70134 -10.25209 -9.98185 -9.52840 -9.48984 -9.12882 -8.92928 -8.76800 -7.44849 -6.88984 -6.55321 -4.24080 2.55308 2.74540 3.27092 3.35044 3.42975 3.52456 3.73351 3.99241 4.16316 4.25301 4.49644 4.53981 4.67338 4.75344 5.13883 5.22274 5.28492 5.36597 5.47868 5.52575 5.57746 5.69934 5.83245 5.85027 5.91895 6.00071 6.02724 6.27270 6.29216 6.33865 6.77724 6.81016 7.05225 7.07251 7.22729 7.27057 7.53795 7.70931 8.01374 8.20147 8.37208 8.68238 8.75761 8.88563 10.11918 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.005109 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.147486 B = 5479.510449 C = 6293.520837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.097 3.903 3 Si 0.914 3.086 4 H -0.292 1.292 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.026 3.974 10 C 0.000 4.000 11 F -0.151 7.151 12 C -0.158 4.158 13 C -0.172 4.172 14 C -0.184 4.184 15 C 0.151 3.849 16 N -0.738 5.738 17 C 0.172 3.828 18 C 0.075 3.925 19 C 0.022 3.978 20 N -0.669 5.669 21 C 0.030 3.970 22 H 0.128 0.872 23 C 0.055 3.945 24 O -0.364 6.364 25 C -0.182 4.182 26 H 0.283 0.717 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.405 0.595 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.336 0.664 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -10.602 -7.295 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.124 4.124 3 Si 0.740 3.260 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.493 4.493 8 H 0.107 0.893 9 C 0.020 3.980 10 C -0.021 4.021 11 F -0.130 7.130 12 C -0.178 4.178 13 C -0.192 4.192 14 C -0.208 4.208 15 C 0.050 3.950 16 N -0.372 5.372 17 C 0.046 3.954 18 C 0.034 3.966 19 C -0.107 4.107 20 N -0.298 5.298 21 C -0.080 4.080 22 H 0.146 0.854 23 C -0.022 4.022 24 O -0.283 6.283 25 C -0.222 4.222 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.241 0.759 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.151 0.849 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.593 -10.024 -7.735 15.302 hybrid contribution 0.484 0.345 0.407 0.720 sum 9.077 -9.680 -7.328 15.159 Atomic orbital electron populations 1.69828 1.08439 1.30284 1.33096 1.26087 0.94441 1.01840 0.90009 0.86211 0.83079 0.79819 0.76854 1.22045 1.20681 1.16838 1.18826 0.98840 0.97667 1.34015 0.89314 1.17205 0.93376 0.94861 0.92566 1.17281 0.87233 1.01531 0.96093 1.91008 1.64832 1.71420 1.85775 1.20378 0.93222 1.03055 1.01169 1.19916 0.97998 1.02218 0.99097 1.20094 0.95625 1.05511 0.99595 1.17532 0.92621 0.96794 0.88081 1.43897 1.15514 1.48435 1.29383 1.20571 0.91917 0.93070 0.89828 1.24548 0.94027 0.89328 0.88654 1.24079 0.98757 0.95028 0.92825 1.63791 1.39571 1.06882 1.19511 1.24886 0.89072 0.97919 0.96122 0.85410 1.23569 1.01790 0.88031 0.88789 1.89159 1.91949 1.30909 1.16301 1.24811 0.99196 0.99566 0.98616 0.90630 0.88200 0.88274 0.88484 0.75853 0.92038 0.91508 0.91182 0.88646 0.84900 0.90292 0.91151 0.89279 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.91 13.93 55.55 0.77 -21.13 16 2 C 0.10 2.66 4.70 -17.32 -0.08 2.58 16 3 Si 0.91 22.68 25.30 -169.99 -4.30 18.38 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.24 -6.23 5.49 56.52 0.31 -5.92 16 7 C -0.47 -12.65 8.64 -37.91 -0.33 -12.98 16 8 H 0.09 2.46 7.20 -52.49 -0.38 2.08 16 9 C 0.03 0.66 4.89 -106.57 -0.52 0.14 16 10 C 0.00 0.00 5.05 -38.72 -0.20 -0.19 16 11 F -0.15 -4.00 12.82 2.25 0.03 -3.97 16 12 C -0.16 -3.56 9.99 -39.56 -0.40 -3.95 16 13 C -0.17 -3.54 10.03 -39.38 -0.40 -3.93 16 14 C -0.18 -3.76 9.29 -39.44 -0.37 -4.13 16 15 C 0.15 3.37 6.68 -83.32 -0.56 2.81 16 16 N -0.74 -14.32 5.50 -58.23 -0.32 -14.64 16 17 C 0.17 2.59 4.97 -4.04 -0.02 2.57 16 18 C 0.07 1.00 1.45 -86.80 -0.13 0.87 16 19 C 0.02 0.29 6.36 -0.26 0.00 0.29 16 20 N -0.67 -7.29 7.23 -96.24 -0.70 -7.98 16 21 C 0.03 0.28 5.87 -62.16 -0.36 -0.08 16 22 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 23 C 0.06 0.66 7.13 38.82 0.28 0.93 16 24 O -0.36 -5.69 11.14 -35.23 -0.39 -6.08 16 25 C -0.18 -1.79 6.58 -22.26 -0.15 -1.93 16 26 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 27 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.10 1.69 6.71 -52.49 -0.35 1.34 16 30 H 0.40 8.34 6.42 -40.82 -0.26 8.08 16 31 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.07 0.91 7.94 -51.93 -0.41 0.49 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.49 7.99 -51.93 -0.42 1.07 16 35 H 0.34 2.95 8.95 -39.29 -0.35 2.60 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -29.81 313.66 -8.59 -38.40 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.19 Total: 9.31 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.22 Total: -17.01 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.24 Total: -43.75 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.39 Total: -6.08 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.03 Total: -3.97 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.30 Total: 18.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.81 -8.59 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163206477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds