Wall clock time and date at job start Tue Mar 31 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46961 * 275.28394 * 3 2 1 5 5 H 1.48493 * 109.47193 * 35.28675 * 3 2 1 6 6 H 1.48503 * 109.46989 * 155.28821 * 3 2 1 7 7 C 1.39916 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 30.10225 * 7 2 1 9 9 C 1.40989 * 120.00384 * 210.10075 * 7 2 1 10 10 C 1.41002 * 120.31744 * 34.56151 * 9 7 2 11 11 F 1.35097 * 120.11953 * 359.97438 * 10 9 7 12 12 C 1.37736 * 119.76278 * 179.70194 * 10 9 7 13 13 C 1.38787 * 120.42908 * 0.53101 * 12 10 9 14 14 C 1.38220 * 120.66260 * 359.48304 * 13 12 10 15 15 C 1.38634 * 120.21827 * 0.23419 * 14 13 12 16 16 N 1.38804 * 120.21679 * 180.02562 * 15 14 13 17 17 C 1.46495 * 120.00058 * 359.97438 * 16 15 14 18 18 C 1.53006 * 109.47265 * 180.02562 * 17 16 15 19 19 C 1.56010 * 116.12367 * 303.09461 * 18 17 16 20 20 N 1.50375 * 104.01209 * 200.94539 * 19 18 17 21 21 C 1.49788 * 105.85739 * 357.08400 * 20 19 18 22 22 H 1.09009 * 116.41213 * 165.81184 * 21 20 19 23 23 C 1.56102 * 103.75751 * 295.25918 * 21 20 19 24 24 O 1.44107 * 105.40692 * 71.47527 * 23 21 20 25 25 C 1.57062 * 116.37398 * 185.03761 * 18 17 16 26 26 H 0.96996 * 119.99837 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.78399 * 180.26571 * 12 10 9 28 28 H 1.08006 * 119.66822 * 179.75975 * 13 12 10 29 29 H 1.07998 * 119.89267 * 180.25830 * 14 13 12 30 30 H 0.97003 * 119.99802 * 180.02562 * 16 15 14 31 31 H 1.09005 * 109.47397 * 300.00267 * 17 16 15 32 32 H 1.08994 * 109.47566 * 60.00431 * 17 16 15 33 33 H 1.08998 * 110.33444 * 320.10160 * 19 18 17 34 34 H 1.09003 * 110.33554 * 82.34439 * 19 18 17 35 35 H 1.00903 * 111.14099 * 117.70566 * 20 19 18 36 36 H 1.09002 * 110.25306 * 312.49408 * 23 21 20 37 37 H 1.09001 * 110.33241 * 190.50426 * 23 21 20 38 38 H 1.08999 * 112.44810 * 294.45704 * 25 18 17 39 39 H 1.09003 * 112.44832 * 62.12135 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3789 2.1108 -1.3941 5 1 1.5009 2.6178 0.8087 6 1 3.5921 1.4105 0.5853 7 6 2.0087 -1.2117 0.0005 8 1 1.5779 -2.0841 -0.4682 9 6 3.2760 -1.2938 0.6129 10 6 3.5574 -0.5395 1.7705 11 9 2.6124 0.2680 2.2997 12 6 4.7973 -0.6331 2.3629 13 6 5.7746 -1.4565 1.8217 14 6 5.5180 -2.2035 0.6873 15 6 4.2776 -2.1344 0.0722 16 7 4.0198 -2.8849 -1.0666 17 6 5.0604 -3.7532 -1.6227 18 6 4.5219 -4.4621 -2.8672 19 6 3.2276 -5.3101 -2.6687 20 7 3.2369 -6.2659 -3.8296 21 6 4.4343 -5.8997 -4.6516 22 1 4.7468 -6.6250 -5.4030 23 6 4.1076 -4.4616 -5.1634 24 8 4.2185 -3.6092 -4.0068 25 6 5.4667 -5.5302 -3.5255 26 1 -0.4850 0.8400 0.0004 27 1 5.0118 -0.0587 3.2521 28 1 6.7440 -1.5177 2.2941 29 1 6.2863 -2.8433 0.2790 30 1 3.1508 -2.8339 -1.4947 31 1 5.9283 -3.1523 -1.8943 32 1 5.3505 -4.4950 -0.8787 33 1 3.2675 -5.8459 -1.7203 34 1 2.3459 -4.6702 -2.7064 35 1 3.2941 -7.2223 -3.5131 36 1 3.0944 -4.4247 -5.5637 37 1 4.8253 -4.1587 -5.9258 38 1 6.3727 -5.0864 -3.9381 39 1 5.6859 -6.3614 -2.8553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163206477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:09 Heat of formation + Delta-G solvation = -50.859490 kcal Electronic energy + Delta-G solvation = -23767.392112 eV Core-core repulsion = 20203.144502 eV Total energy + Delta-G solvation = -3564.247610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.51146 -41.86565 -39.70810 -36.14278 -35.47177 -35.36262 -32.49703 -31.46608 -30.37511 -29.23916 -27.04803 -26.07243 -25.92456 -22.88070 -22.17819 -21.96387 -20.23378 -19.67617 -18.57592 -17.88072 -17.61218 -17.30734 -16.83559 -16.48364 -16.18821 -15.82463 -15.66898 -15.43259 -15.00967 -14.89575 -14.68338 -14.21043 -13.80419 -13.64784 -13.41452 -13.40402 -13.19758 -12.97993 -12.83034 -12.59003 -12.40289 -12.35118 -12.00689 -11.90519 -11.80449 -11.43884 -10.99663 -10.66350 -10.47812 -9.64463 -9.31768 -8.89454 -8.23224 -6.23193 0.70763 0.96277 1.26427 1.38324 1.41871 2.16945 2.52353 2.61177 2.75426 2.90568 3.34425 3.42348 3.50487 3.66402 3.90928 4.02790 4.18651 4.33270 4.37972 4.53174 4.57147 4.58307 4.65997 4.68073 4.70928 4.75749 4.81109 4.93612 4.99260 5.01950 5.25861 5.42078 5.44301 5.56201 5.69476 5.84828 5.93892 6.12040 6.34166 6.37725 6.51899 6.80899 6.99214 7.06839 8.18096 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.005109 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.147486 B = 5479.510449 C = 6293.520837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.063 3.937 3 Si 0.954 3.046 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.493 4.493 8 H 0.062 0.938 9 C -0.011 4.011 10 C -0.017 4.017 11 F -0.164 7.164 12 C -0.181 4.181 13 C -0.138 4.138 14 C -0.187 4.187 15 C 0.157 3.843 16 N -0.740 5.740 17 C 0.167 3.833 18 C 0.064 3.936 19 C 0.025 3.975 20 N -0.678 5.678 21 C 0.044 3.956 22 H 0.166 0.834 23 C 0.044 3.956 24 O -0.403 6.403 25 C -0.165 4.165 26 H 0.287 0.713 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.394 0.606 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.351 0.649 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.553 -12.535 -7.457 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.153 4.153 3 Si 0.780 3.220 4 H -0.216 1.216 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.523 4.523 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.038 4.038 11 F -0.144 7.144 12 C -0.202 4.202 13 C -0.157 4.157 14 C -0.211 4.211 15 C 0.053 3.947 16 N -0.371 5.371 17 C 0.043 3.957 18 C 0.024 3.976 19 C -0.105 4.105 20 N -0.308 5.308 21 C -0.065 4.065 22 H 0.184 0.816 23 C -0.033 4.033 24 O -0.324 6.324 25 C -0.204 4.204 26 H 0.098 0.902 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.168 0.832 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.827 -11.993 -7.919 19.263 hybrid contribution -0.573 0.782 0.476 1.080 sum 12.254 -11.211 -7.443 18.200 Atomic orbital electron populations 1.69860 1.09203 1.30852 1.36667 1.26585 0.94877 1.03682 0.90127 0.85611 0.81738 0.77874 0.76807 1.21635 1.20091 1.17667 1.18742 1.00437 0.97075 1.36054 0.92047 1.17422 0.93829 0.97097 0.93346 1.17825 0.88192 1.01320 0.96489 1.90965 1.65642 1.71849 1.85930 1.20722 0.92533 1.04558 1.02369 1.20557 0.98880 0.98677 0.97592 1.20561 0.95415 1.05752 0.99372 1.17846 0.92772 0.95453 0.88579 1.44166 1.16201 1.48292 1.28452 1.20866 0.90713 0.93003 0.91109 1.24632 0.95260 0.89771 0.87921 1.23871 0.97352 0.95173 0.94075 1.63661 1.41001 1.07332 1.18779 1.25056 0.88093 0.97011 0.96334 0.81644 1.23774 1.01558 0.89687 0.88271 1.89116 1.92293 1.33080 1.17898 1.24777 0.98644 0.98656 0.98313 0.90233 0.85998 0.83704 0.84417 0.77114 0.91465 0.89025 0.90528 0.92712 0.83167 0.92039 0.89173 0.88131 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.31 13.93 21.83 0.30 -49.01 16 2 C 0.06 3.62 4.70 85.24 0.40 4.02 16 3 Si 0.95 48.22 25.30 68.60 1.74 49.96 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.25 -12.92 5.49 99.48 0.55 -12.37 16 7 C -0.49 -28.41 8.64 23.35 0.20 -28.21 16 8 H 0.06 3.72 7.20 -2.91 -0.02 3.69 16 9 C -0.01 -0.59 4.89 -21.13 -0.10 -0.69 16 10 C -0.02 -0.87 5.05 22.83 0.12 -0.76 16 11 F -0.16 -8.88 12.82 44.97 0.58 -8.30 16 12 C -0.18 -7.70 9.99 22.28 0.22 -7.47 16 13 C -0.14 -4.98 10.03 22.40 0.22 -4.75 16 14 C -0.19 -6.86 9.29 22.36 0.21 -6.65 16 15 C 0.16 6.84 6.68 38.94 0.26 7.10 16 16 N -0.74 -28.57 5.50 -338.13 -1.86 -30.43 16 17 C 0.17 4.63 4.97 86.38 0.43 5.06 16 18 C 0.06 1.61 1.45 -8.32 -0.01 1.60 16 19 C 0.02 0.64 6.36 86.66 0.55 1.20 16 20 N -0.68 -13.57 7.23 -458.40 -3.31 -16.89 16 21 C 0.04 0.69 5.87 46.90 0.28 0.97 16 22 H 0.17 1.38 8.14 -2.38 -0.02 1.36 16 23 C 0.04 0.99 7.13 73.06 0.52 1.51 16 24 O -0.40 -12.53 11.14 -148.98 -1.66 -14.19 16 25 C -0.16 -2.57 6.58 33.49 0.22 -2.35 16 26 H 0.29 15.47 8.30 -92.71 -0.77 14.70 16 27 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.14 3.95 6.71 -2.91 -0.02 3.93 16 30 H 0.39 17.11 6.42 -92.71 -0.60 16.51 16 31 H 0.07 1.81 7.94 -2.38 -0.02 1.79 16 32 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 35 H 0.35 5.23 8.95 -89.69 -0.80 4.42 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.19 313.66 -1.17 -70.36 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.47 Total: 27.93 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.51 Total: -29.43 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -4.87 Total: -96.32 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.66 Total: -14.19 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.58 Total: -8.30 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.74 Total: 49.96 kcal Total: -69.19 -1.17 -70.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163206477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.498 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds