Wall clock time and date at job start Tue Mar 31 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48506 * 109.47284 * 270.00281 * 3 2 1 5 5 H 1.48500 * 109.47609 * 30.00305 * 3 2 1 6 6 H 1.48506 * 109.47307 * 150.00176 * 3 2 1 7 7 C 1.39905 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99783 * 199.67809 * 7 2 1 9 9 C 1.40998 * 120.00207 * 19.67889 * 7 2 1 10 10 C 1.40997 * 120.32022 * 36.75077 * 9 7 2 11 11 F 1.35097 * 120.11651 * 0.02562 * 10 9 7 12 12 C 1.37740 * 119.76194 * 180.02562 * 10 9 7 13 13 C 1.38775 * 120.43123 * 0.02844 * 12 10 9 14 14 C 1.38227 * 120.66624 * 359.69524 * 13 12 10 15 15 C 1.38636 * 120.21317 * 0.56059 * 14 13 12 16 16 N 1.38806 * 120.21712 * 179.74865 * 15 14 13 17 17 C 1.46499 * 119.99915 * 359.71851 * 16 15 14 18 18 H 1.09004 * 110.60715 * 323.41529 * 17 16 15 19 19 C 1.54878 * 110.68133 * 86.45656 * 17 16 15 20 20 N 1.48526 * 103.35092 * 155.58879 * 19 17 16 21 21 C 1.47935 * 105.66719 * 320.33271 * 20 19 17 22 22 H 1.09000 * 112.44407 * 263.03562 * 21 20 19 23 23 C 1.56555 * 109.14428 * 137.36433 * 21 20 19 24 24 C 1.54972 * 102.22475 * 225.25678 * 23 21 20 25 25 O 1.44336 * 103.47003 * 37.54174 * 24 23 21 26 26 C 1.43733 * 107.04461 * 319.58935 * 25 24 23 27 27 H 1.08997 * 111.66080 * 263.47618 * 26 25 24 28 28 H 0.96999 * 119.99912 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.77904 * 180.02562 * 12 10 9 30 30 H 1.08004 * 119.66755 * 179.97438 * 13 12 10 31 31 H 1.07996 * 119.89641 * 180.28175 * 14 13 12 32 32 H 0.96996 * 119.99871 * 179.71980 * 16 15 14 33 33 H 1.08998 * 110.67060 * 274.09579 * 19 17 16 34 34 H 1.09000 * 110.66948 * 37.07118 * 19 17 16 35 35 H 1.00899 * 111.00219 * 80.65870 * 20 19 17 36 36 H 1.08997 * 110.49032 * 107.22920 * 23 21 20 37 37 H 1.08995 * 111.37991 * 343.67979 * 23 21 20 38 38 H 1.09003 * 110.61978 * 279.04385 * 24 23 21 39 39 H 1.09000 * 110.62012 * 156.04328 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4406 2.6527 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0086 -1.2116 -0.0005 8 1 3.0413 -1.2391 0.3144 9 6 1.3653 -2.3969 -0.4123 10 6 0.4331 -2.3704 -1.4697 11 9 0.1511 -1.2069 -2.0958 12 6 -0.1889 -3.5350 -1.8622 13 6 0.0956 -4.7336 -1.2233 14 6 1.0106 -4.7810 -0.1883 15 6 1.6486 -3.6243 0.2323 16 7 2.5637 -3.6709 1.2750 17 6 2.8534 -4.9442 1.9389 18 1 1.9514 -5.5516 2.0142 19 6 3.9686 -5.7119 1.1868 20 7 4.5489 -6.5887 2.2359 21 6 4.5903 -5.7670 3.4653 22 1 5.5675 -5.3130 3.6297 23 6 4.1190 -6.6356 4.6795 24 6 3.1476 -5.6758 5.4122 25 8 2.4786 -4.9873 4.3344 26 6 3.4718 -4.7036 3.3349 27 1 3.8636 -3.6913 3.4330 28 1 -0.4850 0.8400 0.0004 29 1 -0.9027 -3.5151 -2.6725 30 1 -0.3997 -5.6394 -1.5408 31 1 1.2260 -5.7213 0.2972 32 1 3.0112 -2.8603 1.5641 33 1 3.5468 -6.3078 0.3774 34 1 4.7198 -5.0214 0.8035 35 1 3.9829 -7.4128 2.3722 36 1 4.9655 -6.8918 5.3166 37 1 3.5995 -7.5343 4.3473 38 1 3.7002 -4.9710 6.0336 39 1 2.4317 -6.2382 6.0116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163347870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:21 Heat of formation + Delta-G solvation = -49.083116 kcal Electronic energy + Delta-G solvation = -23768.152940 eV Core-core repulsion = 20203.982359 eV Total energy + Delta-G solvation = -3564.170580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.82606 -40.42271 -37.83524 -36.08384 -33.93144 -33.48707 -31.25030 -29.67536 -28.68515 -27.52392 -26.36425 -24.94119 -22.48421 -21.82032 -21.15197 -20.46430 -19.73875 -17.43517 -16.94347 -16.72141 -16.12454 -15.48939 -15.17678 -14.89079 -14.36979 -14.28299 -14.13897 -13.82905 -13.72632 -13.59825 -13.02334 -12.68027 -12.39556 -12.24554 -11.67489 -11.60483 -11.50350 -11.33852 -11.25022 -11.15984 -11.08411 -10.84920 -10.72603 -10.49858 -10.10162 -9.75355 -9.47493 -9.23866 -8.94761 -8.52393 -7.12651 -6.69467 -6.36462 -4.20728 2.78669 2.92396 3.14717 3.16814 3.21588 3.64789 3.99527 4.05030 4.22258 4.45360 4.69874 4.75197 4.78493 4.91227 4.99145 5.26218 5.38680 5.41369 5.49752 5.55148 5.60039 5.66748 5.83024 5.98619 6.08544 6.11492 6.23969 6.43170 6.51184 6.55427 6.86621 7.00589 7.21424 7.24385 7.36405 7.37874 7.64535 7.85455 8.10595 8.35615 8.55028 8.71876 8.93186 9.02046 10.35820 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.005164 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.393198 B = 5421.355355 C = 6386.224148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.076 0.924 9 C 0.042 3.958 10 C 0.062 3.938 11 F -0.143 7.143 12 C -0.180 4.180 13 C -0.162 4.162 14 C -0.192 4.192 15 C 0.151 3.849 16 N -0.730 5.730 17 C 0.131 3.869 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.664 5.664 21 C 0.048 3.952 22 H 0.107 0.893 23 C -0.161 4.161 24 C 0.043 3.957 25 O -0.363 6.363 26 C 0.040 3.960 27 H 0.087 0.913 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.399 0.601 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.338 0.662 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -9.928 7.781 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.508 4.508 8 H 0.094 0.906 9 C 0.037 3.963 10 C 0.040 3.960 11 F -0.121 7.121 12 C -0.201 4.201 13 C -0.182 4.182 14 C -0.215 4.215 15 C 0.051 3.949 16 N -0.363 5.363 17 C 0.021 3.979 18 H 0.106 0.894 19 C -0.105 4.105 20 N -0.293 5.293 21 C -0.063 4.063 22 H 0.125 0.875 23 C -0.199 4.199 24 C -0.034 4.034 25 O -0.281 6.281 26 C -0.020 4.020 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.235 0.765 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.493 -9.784 7.612 14.485 hybrid contribution -0.463 1.353 0.375 1.478 sum 7.030 -8.432 7.987 13.576 Atomic orbital electron populations 1.69798 1.07550 1.29267 1.34498 1.25655 0.94531 1.00705 0.92856 0.86389 0.80237 0.81331 0.79150 1.19443 1.20620 1.19006 1.18889 0.98316 0.91288 1.42307 0.90647 1.17059 0.95242 0.91818 0.92206 1.17454 1.03048 0.80276 0.95199 1.91315 1.92523 1.47722 1.80588 1.20428 1.03717 0.92717 1.03220 1.19927 1.02394 0.95854 1.00003 1.20065 1.03688 0.95545 1.02210 1.17595 0.93951 0.93598 0.89805 1.43834 1.47755 1.07365 1.37316 1.22322 0.97959 0.88288 0.89311 0.89433 1.23745 0.96043 0.95933 0.94738 1.62849 1.54060 1.07290 1.05068 1.24047 0.98719 0.93010 0.90500 0.87474 1.23801 0.99869 0.98826 0.97446 1.23581 0.95290 0.93739 0.90788 1.89013 1.31752 1.77704 1.29654 1.24275 0.89108 0.99376 0.89246 0.89537 0.91005 0.88502 0.88586 0.88893 0.76513 0.89921 0.89484 0.84491 0.89857 0.90037 0.92076 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.63 11.12 55.55 0.62 -21.01 16 2 C 0.08 2.12 4.51 -17.32 -0.08 2.04 16 3 Si 0.90 19.65 29.60 -169.99 -5.03 14.62 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.48 -12.57 8.12 -37.91 -0.31 -12.87 16 8 H 0.08 1.87 7.15 -52.48 -0.38 1.50 16 9 C 0.04 1.11 5.41 -106.56 -0.58 0.53 16 10 C 0.06 1.67 6.68 -38.72 -0.26 1.41 16 11 F -0.14 -4.00 14.27 2.25 0.03 -3.97 16 12 C -0.18 -4.30 9.99 -39.56 -0.40 -4.70 16 13 C -0.16 -3.52 10.03 -39.39 -0.40 -3.92 16 14 C -0.19 -4.13 9.20 -39.44 -0.36 -4.50 16 15 C 0.15 3.48 6.68 -83.32 -0.56 2.93 16 16 N -0.73 -14.31 5.28 -50.02 -0.26 -14.58 16 17 C 0.13 2.07 2.68 -66.12 -0.18 1.89 16 18 H 0.09 1.51 6.52 -51.93 -0.34 1.17 16 19 C 0.03 0.36 7.21 -1.93 -0.01 0.35 16 20 N -0.66 -7.69 7.45 -100.67 -0.75 -8.44 16 21 C 0.05 0.53 4.53 -64.24 -0.29 0.24 16 22 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 23 C -0.16 -1.41 6.83 -23.77 -0.16 -1.58 16 24 C 0.04 0.44 7.71 38.20 0.29 0.73 16 25 O -0.36 -5.40 11.05 -35.23 -0.39 -5.79 16 26 C 0.04 0.55 4.07 -24.92 -0.10 0.45 16 27 H 0.09 1.23 7.76 -51.93 -0.40 0.83 16 28 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 29 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.09 1.76 6.26 -52.49 -0.33 1.43 16 32 H 0.40 7.93 6.80 -40.82 -0.28 7.65 16 33 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.34 3.50 7.82 -39.29 -0.31 3.19 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.68 7.33 -51.93 -0.38 0.30 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -29.48 316.65 -9.32 -38.80 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.93 Total: 12.58 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.38 Total: -17.00 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.40 Total: -44.03 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.39 Total: -5.79 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.03 Total: -3.97 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.48 -9.32 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163347870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.280 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds