Wall clock time and date at job start Tue Mar 31 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48506 * 109.47284 * 270.00281 * 3 2 1 5 5 H 1.48500 * 109.47609 * 30.00305 * 3 2 1 6 6 H 1.48506 * 109.47307 * 150.00176 * 3 2 1 7 7 C 1.39905 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99783 * 199.67809 * 7 2 1 9 9 C 1.40998 * 120.00207 * 19.67889 * 7 2 1 10 10 C 1.40997 * 120.32022 * 36.75077 * 9 7 2 11 11 F 1.35097 * 120.11651 * 0.02562 * 10 9 7 12 12 C 1.37740 * 119.76194 * 180.02562 * 10 9 7 13 13 C 1.38775 * 120.43123 * 0.02844 * 12 10 9 14 14 C 1.38227 * 120.66624 * 359.69524 * 13 12 10 15 15 C 1.38636 * 120.21317 * 0.56059 * 14 13 12 16 16 N 1.38806 * 120.21712 * 179.74865 * 15 14 13 17 17 C 1.46499 * 119.99915 * 359.71851 * 16 15 14 18 18 H 1.09004 * 110.60715 * 323.41529 * 17 16 15 19 19 C 1.54878 * 110.68133 * 86.45656 * 17 16 15 20 20 N 1.48526 * 103.35092 * 155.58879 * 19 17 16 21 21 C 1.47935 * 105.66719 * 320.33271 * 20 19 17 22 22 H 1.09000 * 112.44407 * 263.03562 * 21 20 19 23 23 C 1.56555 * 109.14428 * 137.36433 * 21 20 19 24 24 C 1.54972 * 102.22475 * 225.25678 * 23 21 20 25 25 O 1.44336 * 103.47003 * 37.54174 * 24 23 21 26 26 C 1.43733 * 107.04461 * 319.58935 * 25 24 23 27 27 H 1.08997 * 111.66080 * 263.47618 * 26 25 24 28 28 H 0.96999 * 119.99912 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.77904 * 180.02562 * 12 10 9 30 30 H 1.08004 * 119.66755 * 179.97438 * 13 12 10 31 31 H 1.07996 * 119.89641 * 180.28175 * 14 13 12 32 32 H 0.96996 * 119.99871 * 179.71980 * 16 15 14 33 33 H 1.08998 * 110.67060 * 274.09579 * 19 17 16 34 34 H 1.09000 * 110.66948 * 37.07118 * 19 17 16 35 35 H 1.00899 * 111.00219 * 80.65870 * 20 19 17 36 36 H 1.08997 * 110.49032 * 107.22920 * 23 21 20 37 37 H 1.08995 * 111.37991 * 343.67979 * 23 21 20 38 38 H 1.09003 * 110.61978 * 279.04385 * 24 23 21 39 39 H 1.09000 * 110.62012 * 156.04328 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4406 2.6527 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0086 -1.2116 -0.0005 8 1 3.0413 -1.2391 0.3144 9 6 1.3653 -2.3969 -0.4123 10 6 0.4331 -2.3704 -1.4697 11 9 0.1511 -1.2069 -2.0958 12 6 -0.1889 -3.5350 -1.8622 13 6 0.0956 -4.7336 -1.2233 14 6 1.0106 -4.7810 -0.1883 15 6 1.6486 -3.6243 0.2323 16 7 2.5637 -3.6709 1.2750 17 6 2.8534 -4.9442 1.9389 18 1 1.9514 -5.5516 2.0142 19 6 3.9686 -5.7119 1.1868 20 7 4.5489 -6.5887 2.2359 21 6 4.5903 -5.7670 3.4653 22 1 5.5675 -5.3130 3.6297 23 6 4.1190 -6.6356 4.6795 24 6 3.1476 -5.6758 5.4122 25 8 2.4786 -4.9873 4.3344 26 6 3.4718 -4.7036 3.3349 27 1 3.8636 -3.6913 3.4330 28 1 -0.4850 0.8400 0.0004 29 1 -0.9027 -3.5151 -2.6725 30 1 -0.3997 -5.6394 -1.5408 31 1 1.2260 -5.7213 0.2972 32 1 3.0112 -2.8603 1.5641 33 1 3.5468 -6.3078 0.3774 34 1 4.7198 -5.0214 0.8035 35 1 3.9829 -7.4128 2.3722 36 1 4.9655 -6.8918 5.3166 37 1 3.5995 -7.5343 4.3473 38 1 3.7002 -4.9710 6.0336 39 1 2.4317 -6.2382 6.0116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163347870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:20 Heat of formation + Delta-G solvation = -69.561455 kcal Electronic energy + Delta-G solvation = -23769.040947 eV Core-core repulsion = 20203.982359 eV Total energy + Delta-G solvation = -3565.058588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.88450 -41.46818 -39.51798 -37.25816 -35.39969 -35.34227 -32.38921 -31.38395 -30.09044 -28.75316 -27.74126 -26.78229 -23.51539 -23.03283 -22.72791 -21.91431 -21.11201 -19.29298 -18.46787 -17.87533 -17.37340 -16.95620 -16.63618 -16.44641 -15.95641 -15.65274 -15.52457 -15.44489 -15.19959 -15.09480 -14.49710 -14.19315 -13.68503 -13.49333 -13.34926 -13.13063 -13.00409 -12.93687 -12.57110 -12.42507 -12.40727 -12.28190 -11.90644 -11.87573 -11.80854 -11.33951 -10.92436 -10.85606 -10.63379 -9.67749 -9.05438 -8.60582 -8.09944 -6.17056 0.94346 1.06675 1.35906 1.46621 1.47838 2.23715 2.63681 2.72318 2.83221 3.32129 3.43203 3.55150 3.71750 3.79137 4.11955 4.13872 4.16913 4.26988 4.30483 4.42725 4.45330 4.62092 4.67125 4.75714 4.79030 4.87072 4.93261 5.00684 5.12028 5.18055 5.32825 5.51164 5.55556 5.65959 5.78432 5.91043 6.01391 6.22251 6.33736 6.49492 6.73599 6.91876 7.10112 7.17249 8.46046 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.005164 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.393198 B = 5421.355355 C = 6386.224148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.003 3.997 10 C 0.026 3.974 11 F -0.160 7.160 12 C -0.199 4.199 13 C -0.144 4.144 14 C -0.198 4.198 15 C 0.156 3.844 16 N -0.728 5.728 17 C 0.126 3.874 18 H 0.077 0.923 19 C 0.038 3.962 20 N -0.656 5.656 21 C 0.052 3.948 22 H 0.119 0.881 23 C -0.149 4.149 24 C 0.035 3.965 25 O -0.396 6.396 26 C 0.039 3.961 27 H 0.077 0.923 28 H 0.280 0.720 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.394 0.606 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.348 0.652 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -12.086 9.104 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.532 4.532 8 H 0.097 0.903 9 C -0.003 4.003 10 C 0.005 3.995 11 F -0.139 7.139 12 C -0.220 4.220 13 C -0.163 4.163 14 C -0.221 4.221 15 C 0.054 3.946 16 N -0.359 5.359 17 C 0.018 3.982 18 H 0.095 0.905 19 C -0.094 4.094 20 N -0.285 5.285 21 C -0.059 4.059 22 H 0.137 0.863 23 C -0.187 4.187 24 C -0.041 4.041 25 O -0.316 6.316 26 C -0.020 4.020 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.166 0.834 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.952 -11.988 8.970 17.445 hybrid contribution -0.920 1.816 0.031 2.036 sum 8.033 -10.172 9.001 15.780 Atomic orbital electron populations 1.69881 1.09092 1.29950 1.36826 1.26480 0.95175 1.03967 0.92173 0.85378 0.79394 0.77131 0.78880 1.19816 1.19955 1.17573 1.19111 0.98558 0.92142 1.43396 0.90344 1.17429 0.96436 0.93300 0.93114 1.17971 1.04596 0.80668 0.96311 1.91251 1.92812 1.48872 1.80980 1.20687 1.04390 0.92623 1.04291 1.20425 1.01023 0.96359 0.98514 1.20422 1.03242 0.96218 1.02248 1.17833 0.93735 0.93154 0.89926 1.43996 1.46629 1.08836 1.36462 1.22535 0.98333 0.86501 0.90847 0.90531 1.23526 0.94881 0.95784 0.95173 1.62848 1.53719 1.07189 1.04793 1.24107 0.98120 0.92476 0.91153 0.86341 1.23771 1.00353 0.98125 0.96410 1.23857 0.95999 0.94200 0.90040 1.88975 1.33146 1.78469 1.30995 1.24248 0.89738 1.00049 0.88003 0.90509 0.90999 0.87053 0.84724 0.85867 0.77022 0.89722 0.90477 0.83378 0.87231 0.89285 0.91046 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.58 11.12 21.82 0.24 -47.34 16 2 C 0.04 1.94 4.51 85.23 0.38 2.32 16 3 Si 0.97 41.40 29.60 68.60 2.03 43.43 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.27 8.12 23.35 0.19 -27.08 16 8 H 0.08 4.02 7.15 -2.91 -0.02 4.00 16 9 C 0.00 0.14 5.41 -21.12 -0.11 0.03 16 10 C 0.03 1.45 6.68 22.83 0.15 1.61 16 11 F -0.16 -9.39 14.27 44.97 0.64 -8.75 16 12 C -0.20 -9.51 9.99 22.28 0.22 -9.29 16 13 C -0.14 -5.98 10.03 22.40 0.22 -5.75 16 14 C -0.20 -8.23 9.20 22.36 0.21 -8.02 16 15 C 0.16 7.22 6.68 38.94 0.26 7.48 16 16 N -0.73 -28.62 5.28 -312.16 -1.65 -30.27 16 17 C 0.13 3.85 2.68 46.16 0.12 3.98 16 18 H 0.08 2.53 6.52 -2.38 -0.02 2.51 16 19 C 0.04 0.97 7.21 86.63 0.62 1.59 16 20 N -0.66 -13.31 7.45 -472.42 -3.52 -16.83 16 21 C 0.05 1.00 4.53 46.60 0.21 1.21 16 22 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 23 C -0.15 -2.06 6.83 32.51 0.22 -1.84 16 24 C 0.04 0.62 7.71 72.66 0.56 1.18 16 25 O -0.40 -11.27 11.05 -148.98 -1.65 -12.91 16 26 C 0.04 1.04 4.07 31.77 0.13 1.17 16 27 H 0.08 2.16 7.76 -2.39 -0.02 2.14 16 28 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.12 4.33 6.26 -2.91 -0.02 4.31 16 32 H 0.39 16.03 6.80 -92.71 -0.63 15.40 16 33 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.35 6.02 7.82 -89.69 -0.70 5.32 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.13 7.33 -2.39 -0.02 1.12 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -66.04 316.65 -0.73 -66.78 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.23 Total: 37.29 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 3.40 Total: -31.40 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -4.92 Total: -94.44 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.65 Total: -12.91 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 0.64 Total: -8.75 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.04 -0.73 -66.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163347870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.782 kcal (2) G-P(sol) polarization free energy of solvation -66.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds