Wall clock time and date at job start Tue Mar 31 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34634 * 116.99982 * 2 1 4 4 O 1.21504 * 120.00147 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99843 * 180.02562 * 3 2 1 6 6 C 1.47077 * 120.88070 * 180.02562 * 5 3 2 7 7 C 1.53239 * 108.51915 * 231.15954 * 6 5 3 8 8 N 1.46900 * 109.34145 * 306.16873 * 7 6 5 9 9 C 1.38835 * 111.00023 * 187.25233 * 8 7 6 10 10 C 1.39962 * 119.96913 * 0.02562 * 9 8 7 11 11 N 1.32129 * 120.31472 * 179.97438 * 10 9 8 12 12 C 1.31927 * 120.27347 * 0.02562 * 11 10 9 13 13 C 1.40677 * 119.93406 * 359.97438 * 12 11 10 14 14 C 1.41273 * 120.15609 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00261 * 353.66706 * 14 13 12 16 16 C 1.40054 * 119.99894 * 173.67001 * 14 13 12 17 17 N 1.30727 * 120.00147 * 6.22442 * 16 14 13 18 18 Si 1.86806 * 120.00032 * 186.22745 * 16 14 13 19 19 H 1.48501 * 109.47097 * 59.99844 * 18 16 14 20 20 H 1.48500 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46727 * 299.99876 * 18 16 14 22 22 N 1.32238 * 119.96844 * 179.97438 * 9 8 7 23 23 C 1.46898 * 111.26688 * 63.10599 * 8 7 6 24 24 C 1.47083 * 120.88183 * 359.97438 * 5 3 2 25 25 H 1.08998 * 109.47061 * 59.99646 * 1 2 3 26 26 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46649 * 300.00273 * 1 2 3 28 28 H 1.09006 * 109.63031 * 111.45171 * 6 5 3 29 29 H 1.08994 * 109.63333 * 350.87074 * 6 5 3 30 30 H 1.09003 * 109.49220 * 186.21056 * 7 6 5 31 31 H 1.09003 * 109.51800 * 66.14580 * 7 6 5 32 32 H 1.07997 * 119.84172 * 0.25450 * 10 9 8 33 33 H 1.07999 * 120.03103 * 179.97438 * 12 11 10 34 34 H 0.97008 * 120.00100 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.49015 * 56.85640 * 23 8 7 36 36 H 1.09004 * 109.49527 * 176.93341 * 23 8 7 37 37 H 1.08999 * 109.62743 * 248.54823 * 24 5 3 38 38 H 1.08997 * 109.62499 * 9.12619 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0970 2.5701 0.0000 7 6 5.1296 2.5749 -1.1322 8 7 6.0094 1.4067 -0.9932 9 6 7.0571 1.4620 -1.9024 10 6 7.1586 2.5414 -2.7875 11 7 8.1532 2.6012 -3.6552 12 6 9.0594 1.6433 -3.6952 13 6 8.9681 0.5532 -2.8106 14 6 9.9356 -0.4754 -2.8497 15 1 10.6880 -0.4801 -3.6245 16 6 9.9192 -1.4893 -1.8836 17 7 8.9398 -1.5535 -1.0201 18 14 11.2967 -2.7499 -1.8290 19 1 12.5914 -2.0588 -1.6017 20 1 11.0470 -3.7084 -0.7226 21 1 11.3472 -3.4841 -3.1187 22 7 7.9589 0.4952 -1.9306 23 6 5.2565 0.1531 -1.1332 24 6 4.2291 0.0490 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.6005 2.7176 0.9555 29 1 3.3723 3.3679 -0.1620 30 1 5.7245 3.4867 -1.0780 31 1 4.6167 2.5318 -2.0930 32 1 6.4229 3.3315 -2.7581 33 1 9.8706 1.6959 -4.4063 34 1 8.9286 -2.2556 -0.3507 35 1 4.7415 0.1435 -2.0938 36 1 5.9434 -0.6916 -1.0799 37 1 4.7453 -0.0454 0.9548 38 1 3.5916 -0.8200 -0.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163684132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:20 Heat of formation + Delta-G solvation = -8.631426 kcal Electronic energy + Delta-G solvation = -23517.278395 eV Core-core repulsion = 19974.781894 eV Total energy + Delta-G solvation = -3542.496502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66444 -39.55133 -37.95464 -36.34188 -34.73019 -33.99656 -31.91261 -30.98486 -29.84212 -28.03340 -26.56147 -25.90645 -23.86198 -22.45383 -21.83601 -21.10862 -19.76494 -18.18835 -17.59300 -17.03103 -16.56108 -16.24006 -15.61779 -15.08895 -14.92777 -14.78224 -14.43047 -14.33520 -14.03332 -13.77357 -13.20610 -12.99097 -12.50216 -12.20979 -12.14226 -11.76145 -11.57118 -11.39470 -11.24813 -11.16140 -10.97188 -10.84509 -10.74970 -10.48982 -10.42344 -9.92970 -9.63607 -9.53657 -8.76996 -8.47829 -7.57369 -7.16806 -6.54460 -4.76735 2.12254 2.45094 2.79813 2.92044 2.98825 3.00504 3.15016 3.79936 3.86617 4.14217 4.58235 4.98482 5.02446 5.09170 5.09876 5.25937 5.34048 5.36106 5.50381 5.62516 5.72403 5.75511 5.89199 5.98449 6.10651 6.14287 6.20787 6.24886 6.42845 6.46173 6.67034 6.89238 6.97139 7.30964 7.40429 7.42135 7.79707 7.99922 8.24391 8.40525 8.62768 9.23265 9.79654 10.06746 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.004267 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.102670 B = 6560.589134 C = 7604.927570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.580 6.580 5 N -0.593 5.593 6 C 0.133 3.867 7 C 0.043 3.957 8 N -0.471 5.471 9 C 0.289 3.711 10 C -0.160 4.160 11 N -0.415 5.415 12 C -0.084 4.084 13 C 0.227 3.773 14 C -0.410 4.410 15 H 0.091 0.909 16 C 0.067 3.933 17 N -0.705 5.705 18 Si 0.912 3.088 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.263 1.263 22 N -0.465 5.465 23 C 0.055 3.945 24 C 0.116 3.884 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.277 0.723 35 H 0.035 0.965 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 -1.373 4.184 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.470 6.470 5 N -0.334 5.334 6 C 0.012 3.988 7 C -0.085 4.085 8 N -0.189 5.189 9 C 0.047 3.953 10 C -0.321 4.321 11 N -0.127 5.127 12 C -0.255 4.255 13 C 0.100 3.900 14 C -0.442 4.442 15 H 0.109 0.891 16 C -0.160 4.160 17 N -0.325 5.325 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.188 1.188 22 N -0.187 5.187 23 C -0.072 4.072 24 C -0.006 4.006 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.568 -1.216 4.886 11.707 hybrid contribution 0.241 -0.491 -0.573 0.792 sum -10.327 -1.707 4.313 11.321 Atomic orbital electron populations 1.23158 0.74764 1.03281 1.02554 1.86246 1.23873 1.31156 1.87137 1.18022 0.83194 0.82042 0.76362 1.90961 1.64311 1.34925 1.56809 1.47089 1.01726 1.09289 1.75258 1.21844 0.93886 0.83469 0.99606 1.22611 0.93810 0.94812 0.97314 1.58279 1.09135 1.02647 1.48877 1.20609 0.92534 0.93455 0.88687 1.22608 1.03887 1.03366 1.02219 1.67564 1.00974 1.25844 1.18296 1.23062 1.01586 0.94839 1.05994 1.19207 0.90530 0.92181 0.88093 1.19620 1.09958 1.04522 1.10142 0.89074 1.26128 0.96678 0.98430 0.94759 1.70067 1.26390 1.26297 1.09750 0.86296 0.81357 0.79755 0.79003 1.18728 1.20070 1.18758 1.69149 1.02702 1.24518 1.22287 1.22496 0.95334 0.93388 0.95974 1.21991 0.92483 0.85858 1.00279 0.91991 0.88107 0.92010 0.90086 0.88245 0.88352 0.93426 0.85540 0.85011 0.91132 0.94661 0.86410 0.90024 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -4.84 9.25 -40.31 -0.37 -5.21 16 3 C 0.65 9.87 8.44 54.05 0.46 10.33 16 4 O -0.58 -10.01 15.58 -19.27 -0.30 -10.31 16 5 N -0.59 -8.67 3.01 -178.23 -0.54 -9.21 16 6 C 0.13 1.85 6.60 -3.60 -0.02 1.82 16 7 C 0.04 0.68 4.29 -3.70 -0.02 0.67 16 8 N -0.47 -9.05 4.70 -172.70 -0.81 -9.86 16 9 C 0.29 6.73 6.45 -155.01 -1.00 5.73 16 10 C -0.16 -3.71 10.01 -16.78 -0.17 -3.88 16 11 N -0.42 -10.28 10.47 -12.11 -0.13 -10.41 16 12 C -0.08 -2.10 10.97 -16.59 -0.18 -2.28 16 13 C 0.23 5.96 6.54 -84.84 -0.55 5.40 16 14 C -0.41 -10.23 9.15 -37.75 -0.35 -10.57 16 15 H 0.09 2.09 7.85 -52.49 -0.41 1.67 16 16 C 0.07 1.58 5.49 -17.34 -0.10 1.48 16 17 N -0.70 -17.16 11.51 55.55 0.64 -16.52 16 18 Si 0.91 17.23 29.56 -169.99 -5.03 12.20 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 22 N -0.46 -12.05 7.33 -10.14 -0.07 -12.12 16 23 C 0.06 0.97 5.51 -3.68 -0.02 0.95 16 24 C 0.12 1.65 6.62 -3.58 -0.02 1.63 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.33 7.06 -51.93 -0.37 0.96 16 30 H 0.10 1.49 6.86 -51.93 -0.36 1.13 16 31 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 32 H 0.13 2.57 5.78 -52.49 -0.30 2.27 16 33 H 0.13 2.98 8.06 -52.49 -0.42 2.55 16 34 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.12 2.36 7.55 -51.93 -0.39 1.96 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -30.52 318.44 -7.41 -37.92 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.69 Total: 5.83 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.91 Total: 12.88 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.91 Total: -58.12 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.67 Total: -15.52 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.52 -7.41 -37.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163684132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.290 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds