Wall clock time and date at job start Tue Mar 31 2020 06:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34634 * 116.99982 * 2 1 4 4 O 1.21504 * 120.00147 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99843 * 180.02562 * 3 2 1 6 6 C 1.47077 * 120.88070 * 180.02562 * 5 3 2 7 7 C 1.53239 * 108.51915 * 231.15954 * 6 5 3 8 8 N 1.46900 * 109.34145 * 306.16873 * 7 6 5 9 9 C 1.38835 * 111.00023 * 187.25233 * 8 7 6 10 10 C 1.39962 * 119.96913 * 0.02562 * 9 8 7 11 11 N 1.32129 * 120.31472 * 179.97438 * 10 9 8 12 12 C 1.31927 * 120.27347 * 0.02562 * 11 10 9 13 13 C 1.40677 * 119.93406 * 359.97438 * 12 11 10 14 14 C 1.41273 * 120.15609 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00261 * 353.66706 * 14 13 12 16 16 C 1.40054 * 119.99894 * 173.67001 * 14 13 12 17 17 N 1.30727 * 120.00147 * 6.22442 * 16 14 13 18 18 Si 1.86806 * 120.00032 * 186.22745 * 16 14 13 19 19 H 1.48501 * 109.47097 * 59.99844 * 18 16 14 20 20 H 1.48500 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46727 * 299.99876 * 18 16 14 22 22 N 1.32238 * 119.96844 * 179.97438 * 9 8 7 23 23 C 1.46898 * 111.26688 * 63.10599 * 8 7 6 24 24 C 1.47083 * 120.88183 * 359.97438 * 5 3 2 25 25 H 1.08998 * 109.47061 * 59.99646 * 1 2 3 26 26 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46649 * 300.00273 * 1 2 3 28 28 H 1.09006 * 109.63031 * 111.45171 * 6 5 3 29 29 H 1.08994 * 109.63333 * 350.87074 * 6 5 3 30 30 H 1.09003 * 109.49220 * 186.21056 * 7 6 5 31 31 H 1.09003 * 109.51800 * 66.14580 * 7 6 5 32 32 H 1.07997 * 119.84172 * 0.25450 * 10 9 8 33 33 H 1.07999 * 120.03103 * 179.97438 * 12 11 10 34 34 H 0.97008 * 120.00100 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.49015 * 56.85640 * 23 8 7 36 36 H 1.09004 * 109.49527 * 176.93341 * 23 8 7 37 37 H 1.08999 * 109.62743 * 248.54823 * 24 5 3 38 38 H 1.08997 * 109.62499 * 9.12619 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0970 2.5701 0.0000 7 6 5.1296 2.5749 -1.1322 8 7 6.0094 1.4067 -0.9932 9 6 7.0571 1.4620 -1.9024 10 6 7.1586 2.5414 -2.7875 11 7 8.1532 2.6012 -3.6552 12 6 9.0594 1.6433 -3.6952 13 6 8.9681 0.5532 -2.8106 14 6 9.9356 -0.4754 -2.8497 15 1 10.6880 -0.4801 -3.6245 16 6 9.9192 -1.4893 -1.8836 17 7 8.9398 -1.5535 -1.0201 18 14 11.2967 -2.7499 -1.8290 19 1 12.5914 -2.0588 -1.6017 20 1 11.0470 -3.7084 -0.7226 21 1 11.3472 -3.4841 -3.1187 22 7 7.9589 0.4952 -1.9306 23 6 5.2565 0.1531 -1.1332 24 6 4.2291 0.0490 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.6005 2.7176 0.9555 29 1 3.3723 3.3679 -0.1620 30 1 5.7245 3.4867 -1.0780 31 1 4.6167 2.5318 -2.0930 32 1 6.4229 3.3315 -2.7581 33 1 9.8706 1.6959 -4.4063 34 1 8.9286 -2.2556 -0.3507 35 1 4.7415 0.1435 -2.0938 36 1 5.9434 -0.6916 -1.0799 37 1 4.7453 -0.0454 0.9548 38 1 3.5916 -0.8200 -0.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163684132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:19 Heat of formation + Delta-G solvation = -29.358060 kcal Electronic energy + Delta-G solvation = -23518.177170 eV Core-core repulsion = 19974.781894 eV Total energy + Delta-G solvation = -3543.395276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89092 -41.14577 -39.39407 -37.50766 -36.18267 -35.74715 -33.67091 -32.32383 -31.52433 -29.17377 -27.92001 -27.47537 -25.31161 -23.89324 -23.53736 -22.59783 -21.01761 -19.59896 -19.15900 -18.20304 -17.92078 -17.65718 -17.32302 -16.75633 -16.51255 -16.08525 -15.78535 -15.65377 -15.20827 -14.96378 -14.78327 -14.49613 -13.80960 -13.60632 -13.38530 -13.12950 -13.00893 -12.95891 -12.67589 -12.56268 -12.39807 -12.27642 -12.01524 -11.80541 -11.74587 -11.64795 -11.41929 -11.30165 -10.32843 -9.91998 -9.41631 -8.89228 -8.33124 -6.65659 0.62411 1.05628 1.14669 1.44694 1.56165 1.57990 1.63185 2.21704 2.58263 2.80343 2.85784 3.71479 3.77994 3.83922 3.99327 4.08976 4.14424 4.27106 4.34461 4.36621 4.37895 4.46064 4.50582 4.65875 4.69982 4.75453 4.78483 4.93862 4.97040 5.07176 5.16273 5.21722 5.25771 5.58861 5.85230 6.02655 6.19019 6.19544 6.57921 6.77380 7.10600 7.35759 7.93845 8.32463 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.004267 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.102670 B = 6560.589134 C = 7604.927570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.649 3.351 4 O -0.603 6.603 5 N -0.595 5.595 6 C 0.140 3.860 7 C 0.046 3.954 8 N -0.474 5.474 9 C 0.285 3.715 10 C -0.169 4.169 11 N -0.426 5.426 12 C -0.108 4.108 13 C 0.197 3.803 14 C -0.434 4.434 15 H 0.102 0.898 16 C 0.026 3.974 17 N -0.733 5.733 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.256 1.256 22 N -0.490 5.490 23 C 0.063 3.937 24 C 0.131 3.869 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.043 0.957 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.286 0.714 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 -2.262 5.071 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.405 3.595 4 O -0.495 6.495 5 N -0.336 5.336 6 C 0.019 3.981 7 C -0.082 4.082 8 N -0.193 5.193 9 C 0.042 3.958 10 C -0.330 4.330 11 N -0.138 5.138 12 C -0.278 4.278 13 C 0.070 3.930 14 C -0.466 4.466 15 H 0.120 0.880 16 C -0.199 4.199 17 N -0.354 5.354 18 Si 0.811 3.189 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.181 1.181 22 N -0.213 5.213 23 C -0.064 4.064 24 C 0.008 3.992 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.170 -2.103 5.767 12.746 hybrid contribution 0.297 -0.196 -0.823 0.897 sum -10.873 -2.298 4.944 12.164 Atomic orbital electron populations 1.23508 0.72691 1.05628 1.02595 1.86254 1.25875 1.29884 1.86685 1.18110 0.83156 0.82369 0.75912 1.90945 1.64776 1.35884 1.57897 1.47136 1.01849 1.09479 1.75087 1.21828 0.93431 0.83603 0.99248 1.22694 0.93763 0.93706 0.98085 1.58315 1.09254 1.04406 1.47293 1.20990 0.93064 0.92836 0.88875 1.23063 1.03981 1.04141 1.01849 1.67570 1.01402 1.25920 1.18899 1.23246 1.02548 0.95142 1.06840 1.19634 0.91329 0.93167 0.88826 1.20054 1.10212 1.05106 1.11191 0.87990 1.27026 0.99093 0.99961 0.93797 1.70143 1.27989 1.27123 1.10111 0.85114 0.77629 0.76846 0.79335 1.18492 1.19150 1.18053 1.69147 1.03414 1.25769 1.22949 1.22381 0.95163 0.91758 0.97077 1.21878 0.91784 0.86495 0.98996 0.92222 0.84653 0.91748 0.88790 0.87351 0.87570 0.93857 0.82959 0.83745 0.90343 0.95550 0.89102 0.89261 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 10.56 113.37 1.20 2.00 16 2 O -0.37 -8.95 9.25 -55.43 -0.51 -9.46 16 3 C 0.65 18.57 8.44 129.79 1.10 19.66 16 4 O -0.60 -19.86 15.58 19.83 0.31 -19.56 16 5 N -0.60 -16.33 3.01 -948.22 -2.85 -19.19 16 6 C 0.14 3.63 6.60 86.35 0.57 4.20 16 7 C 0.05 1.39 4.29 86.38 0.37 1.76 16 8 N -0.47 -18.10 4.70 -700.31 -3.29 -21.39 16 9 C 0.29 13.44 6.45 133.37 0.86 14.30 16 10 C -0.17 -7.86 10.01 85.07 0.85 -7.00 16 11 N -0.43 -21.35 10.47 -192.24 -2.01 -23.36 16 12 C -0.11 -5.54 10.97 85.27 0.94 -4.60 16 13 C 0.20 10.60 6.54 40.15 0.26 10.87 16 14 C -0.43 -21.95 9.15 23.46 0.21 -21.73 16 15 H 0.10 4.71 7.85 -2.91 -0.02 4.69 16 16 C 0.03 1.21 5.49 85.30 0.47 1.68 16 17 N -0.73 -35.97 11.51 21.84 0.25 -35.72 16 18 Si 0.99 34.75 29.56 68.60 2.03 36.77 16 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.27 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 22 N -0.49 -26.00 7.33 -186.00 -1.36 -27.36 16 23 C 0.06 2.22 5.51 86.40 0.48 2.70 16 24 C 0.13 3.52 6.62 86.36 0.57 4.09 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 28 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.11 2.68 7.06 -2.39 -0.02 2.66 16 30 H 0.11 3.06 6.86 -2.39 -0.02 3.05 16 31 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 32 H 0.15 6.08 5.78 -2.91 -0.02 6.06 16 33 H 0.15 6.70 8.06 -2.91 -0.02 6.68 16 34 H 0.29 12.57 8.29 -92.70 -0.77 11.80 16 35 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 3.72 7.55 -2.38 -0.02 3.70 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.11 2.63 6.98 -2.39 -0.02 2.62 16 Total: -1.00 -66.05 318.44 1.52 -64.54 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.09 Total: 26.82 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 7.87 Total: 27.91 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -9.27 Total: -127.02 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.20 Total: -29.02 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.77 kcal Total: -66.05 1.52 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163684132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.180 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds