Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48494 * 109.47569 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47268 * 300.00623 * 3 2 1 6 6 H 1.48497 * 109.47099 * 60.00071 * 3 2 1 7 7 C 1.39914 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00335 * 159.84231 * 7 2 1 9 9 C 1.40996 * 120.00204 * 339.84175 * 7 2 1 10 10 C 1.40999 * 120.31858 * 323.53967 * 9 7 2 11 11 F 1.35103 * 120.11261 * 359.97438 * 10 9 7 12 12 C 1.37728 * 119.76655 * 180.02562 * 10 9 7 13 13 C 1.38793 * 120.43061 * 359.97438 * 12 10 9 14 14 C 1.38225 * 120.65966 * 0.02562 * 13 12 10 15 15 C 1.38626 * 120.21989 * 359.97365 * 14 13 12 16 16 N 1.38808 * 120.21919 * 179.97438 * 15 14 13 17 17 C 1.46491 * 119.99875 * 0.02562 * 16 15 14 18 18 C 1.50703 * 109.47121 * 179.97438 * 17 16 15 19 19 O 1.21280 * 120.00001 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99966 * 179.97438 * 18 17 16 21 21 C 1.47016 * 125.64841 * 359.69704 * 20 18 17 22 22 C 1.54314 * 107.27723 * 180.96406 * 21 20 18 23 23 C 1.55155 * 102.86055 * 22.52816 * 22 21 20 24 24 C 1.47420 * 125.64763 * 179.97438 * 20 18 17 25 25 H 0.97003 * 120.00293 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.78906 * 179.97438 * 12 10 9 27 27 H 1.07998 * 119.66847 * 180.02562 * 13 12 10 28 28 H 1.08000 * 119.89146 * 179.70595 * 14 13 12 29 29 H 0.96997 * 119.99685 * 180.02562 * 16 15 14 30 30 H 1.09003 * 109.47263 * 299.99857 * 17 16 15 31 31 H 1.08997 * 109.47378 * 59.99622 * 17 16 15 32 32 H 1.09003 * 109.88636 * 300.51232 * 21 20 18 33 33 H 1.09005 * 109.88134 * 61.67722 * 21 20 18 34 34 H 1.09001 * 110.92542 * 264.11386 * 22 21 20 35 35 H 1.08998 * 110.59397 * 140.78590 * 22 21 20 36 36 H 1.09005 * 111.00355 * 206.22996 * 23 22 21 37 37 H 1.08997 * 111.00828 * 82.37506 * 23 22 21 38 38 H 1.09000 * 110.37152 * 274.68138 * 24 20 18 39 39 H 1.09006 * 110.36500 * 36.89161 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8843 2.3964 1.2125 7 6 2.0086 -1.2117 -0.0005 8 1 3.0390 -1.2403 -0.3229 9 6 1.3684 -2.3956 0.4197 10 6 0.4393 -2.3645 1.4798 11 9 0.1574 -1.1979 2.1001 12 6 -0.1790 -3.5279 1.8814 13 6 0.1062 -4.7300 1.2491 14 6 1.0140 -4.7808 0.2080 15 6 1.6521 -3.6263 -0.2183 16 7 2.5641 -3.6774 -1.2634 17 6 2.8547 -4.9542 -1.9202 18 6 3.8692 -4.7374 -3.0134 19 8 4.3067 -3.6259 -3.2228 20 7 4.2910 -5.7790 -3.7575 21 6 3.8510 -7.1737 -3.6067 22 6 4.6159 -8.0112 -4.6530 23 6 5.8645 -7.1387 -4.9480 24 6 5.2741 -5.7094 -4.8538 25 1 -0.4851 0.8400 0.0004 26 1 -0.8904 -3.5046 2.6937 27 1 -0.3861 -5.6348 1.5738 28 1 1.2302 -5.7238 -0.2721 29 1 3.0090 -2.8677 -1.5589 30 1 3.2532 -5.6569 -1.1883 31 1 1.9384 -5.3584 -2.3503 32 1 4.0834 -7.5292 -2.6028 33 1 2.7788 -7.2459 -3.7889 34 1 4.0187 -8.1473 -5.5547 35 1 4.9085 -8.9739 -4.2340 36 1 6.2517 -7.3361 -5.9477 37 1 6.6363 -7.2934 -4.1941 38 1 4.7821 -5.4395 -5.7882 39 1 6.0568 -4.9888 -4.6162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164585104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = -49.879197 kcal Electronic energy + Delta-G solvation = -23023.210324 eV Core-core repulsion = 19459.005223 eV Total energy + Delta-G solvation = -3564.205101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.79136 -40.09094 -37.97349 -37.24440 -34.06903 -33.44815 -31.95303 -29.93261 -29.34846 -28.31966 -26.21972 -24.87178 -23.40340 -21.48890 -21.05987 -20.17831 -19.19376 -17.56808 -17.15580 -16.79051 -16.06526 -15.70783 -15.11287 -14.95137 -14.39391 -14.10499 -13.85405 -13.74323 -13.60377 -13.40728 -13.32194 -13.08054 -12.61657 -12.48570 -12.32935 -11.66529 -11.59994 -11.51152 -11.26418 -11.16787 -11.11123 -11.06764 -10.71845 -10.51507 -10.05896 -9.80091 -9.45014 -8.96743 -8.86769 -8.76867 -7.09779 -6.66277 -6.35795 -4.15054 2.65981 2.81085 2.82495 2.95439 3.21099 3.24814 3.27691 4.11664 4.15629 4.27566 4.47465 4.58266 4.75729 4.80271 4.97135 5.07773 5.33833 5.40234 5.44818 5.51642 5.57652 5.58650 5.63408 5.75829 5.83198 6.10999 6.12981 6.15852 6.45102 6.53305 7.01777 7.27099 7.33213 7.40052 7.44498 7.66923 7.87953 8.14859 8.17394 8.38953 8.60282 8.80650 8.98807 9.06272 10.39274 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.004296 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.497800 B = 6516.253345 C = 7847.159283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.081 3.919 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.474 4.474 8 H 0.078 0.922 9 C 0.044 3.956 10 C 0.060 3.940 11 F -0.143 7.143 12 C -0.178 4.178 13 C -0.165 4.165 14 C -0.194 4.194 15 C 0.148 3.852 16 N -0.734 5.734 17 C 0.125 3.875 18 C 0.525 3.475 19 O -0.527 6.527 20 N -0.624 5.624 21 C 0.096 3.904 22 C -0.131 4.131 23 C -0.134 4.134 24 C 0.105 3.895 25 H 0.279 0.721 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.410 0.590 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -14.725 -8.313 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.504 4.504 8 H 0.096 0.904 9 C 0.038 3.962 10 C 0.038 3.962 11 F -0.121 7.121 12 C -0.199 4.199 13 C -0.185 4.185 14 C -0.218 4.218 15 C 0.048 3.952 16 N -0.372 5.372 17 C -0.004 4.004 18 C 0.314 3.686 19 O -0.403 6.403 20 N -0.361 5.361 21 C -0.027 4.027 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.018 4.018 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.249 0.751 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.334 -14.004 -8.421 17.911 hybrid contribution 0.252 1.128 -0.088 1.159 sum 7.586 -12.876 -8.509 17.197 Atomic orbital electron populations 1.69805 1.07579 1.29200 1.34458 1.25662 0.94528 1.00802 0.92721 0.86343 0.81038 0.81596 0.78250 1.18550 1.20313 1.19856 1.18999 0.98761 0.91306 1.41287 0.90362 1.17068 0.95093 0.91779 0.92220 1.17416 1.03238 0.80245 0.95343 1.91317 1.92514 1.47455 1.80848 1.20423 1.03652 0.92672 1.03110 1.19897 1.02749 0.95797 1.00062 1.20035 1.03913 0.95306 1.02505 1.17589 0.94039 0.93821 0.89769 1.43763 1.48494 1.07574 1.37343 1.20742 0.96427 0.90249 0.93028 1.20590 0.82453 0.83348 0.82248 1.90718 1.57332 1.23165 1.69042 1.48472 1.44292 1.08008 1.35313 1.22092 0.99465 0.81097 1.00007 1.22635 0.96644 0.98547 0.99106 1.22798 0.97556 0.94104 1.02750 1.22211 0.91860 0.97649 0.90076 0.91068 0.88492 0.88553 0.88858 0.75058 0.90523 0.90525 0.90969 0.90977 0.90416 0.89882 0.89816 0.90520 0.91500 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.03 11.13 55.55 0.62 -21.41 16 2 C 0.08 2.21 4.50 -17.32 -0.08 2.13 16 3 Si 0.90 20.53 29.60 -169.99 -5.03 15.49 16 4 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.47 -13.11 8.13 -37.91 -0.31 -13.42 16 8 H 0.08 2.12 7.14 -52.48 -0.37 1.75 16 9 C 0.04 1.19 5.41 -106.56 -0.58 0.62 16 10 C 0.06 1.62 6.68 -38.72 -0.26 1.36 16 11 F -0.14 -4.04 14.26 2.25 0.03 -4.01 16 12 C -0.18 -4.26 9.99 -39.56 -0.40 -4.65 16 13 C -0.17 -3.57 10.03 -39.38 -0.40 -3.96 16 14 C -0.19 -4.16 9.29 -39.44 -0.37 -4.53 16 15 C 0.15 3.55 6.68 -83.32 -0.56 2.99 16 16 N -0.73 -15.75 5.60 -59.40 -0.33 -16.08 16 17 C 0.12 2.02 4.57 -5.20 -0.02 2.00 16 18 C 0.52 8.48 7.92 -10.98 -0.09 8.39 16 19 O -0.53 -10.68 15.92 5.56 0.09 -10.60 16 20 N -0.62 -7.49 3.33 -170.51 -0.57 -8.06 16 21 C 0.10 0.79 6.48 -3.07 -0.02 0.77 16 22 C -0.13 -0.76 6.95 -24.90 -0.17 -0.93 16 23 C -0.13 -0.87 7.08 -24.57 -0.17 -1.05 16 24 C 0.10 1.05 6.91 -2.52 -0.02 1.03 16 25 H 0.28 7.21 8.30 -40.82 -0.34 6.87 16 26 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.68 6.71 -52.49 -0.35 1.33 16 29 H 0.41 9.58 5.87 -40.82 -0.24 9.34 16 30 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 31 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -32.51 326.83 -8.85 -41.35 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.15 Total: 7.64 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.43 Total: -9.26 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.28 Total: -45.54 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.03 Total: -4.01 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.51 -8.85 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164585104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.527 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds