Wall clock time and date at job start Tue Mar 31 2020 06:36:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34565 * 117.00520 * 2 1
4 4 O 1.21429 * 119.99733 * 359.97438 * 3 2 1
5 5 N 1.34772 * 120.00027 * 180.28107 * 3 2 1
6 6 N 1.39925 * 125.87612 * 354.06665 * 5 3 2
7 7 C 1.30231 * 109.28146 * 180.02562 * 6 5 3
8 8 C 1.41561 * 108.46822 * 0.02562 * 7 6 5
9 9 C 1.43195 * 126.46640 * 179.97438 * 8 7 6
10 10 N 7.05379 * 149.35647 * 356.24272 * 2 1 3
11 11 C 1.36314 * 125.86982 * 173.76350 * 5 3 2
12 12 N 1.37880 * 126.53733 * 359.97438 * 11 5 3
13 13 C 1.46898 * 111.00089 * 152.92879 * 12 11 5
14 14 H 1.09000 * 109.47500 * 57.14920 * 13 12 11
15 15 C 1.53001 * 109.46971 * 297.15397 * 13 12 11
16 16 C 1.52999 * 109.47349 * 177.15328 * 13 12 11
17 17 C 1.52995 * 109.46845 * 294.99744 * 16 13 12
18 18 C 1.50706 * 109.47052 * 179.97438 * 17 16 13
19 19 H 1.07996 * 119.99755 * 0.02562 * 18 17 16
20 20 C 1.37879 * 119.99873 * 179.97438 * 18 17 16
21 21 N 1.31514 * 120.00091 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 119.99659 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47134 * 90.00291 * 22 20 18
24 24 H 1.48503 * 109.47378 * 210.00448 * 22 20 18
25 25 H 1.48498 * 109.47600 * 330.00336 * 22 20 18
26 26 H 1.09001 * 109.47124 * 59.99405 * 1 2 3
27 27 H 1.08991 * 109.47092 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46702 * 300.00180 * 1 2 3
29 29 H 1.07992 * 125.76828 * 180.02562 * 7 6 5
30 30 H 1.00900 * 110.99768 * 276.87693 * 12 11 5
31 31 H 1.08993 * 109.47482 * 180.02562 * 15 13 12
32 32 H 1.09006 * 109.46994 * 300.00237 * 15 13 12
33 33 H 1.09000 * 109.47099 * 59.99599 * 15 13 12
34 34 H 1.09005 * 109.47070 * 54.99552 * 16 13 12
35 35 H 1.09001 * 109.47222 * 174.99948 * 16 13 12
36 36 H 1.08998 * 109.47468 * 299.99962 * 17 16 13
37 37 H 1.09000 * 109.47565 * 60.00027 * 17 16 13
38 38 H 0.97003 * 119.99486 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0630 1.1989 0.0000
4 8 1.4017 2.2173 -0.0005
5 7 3.4089 1.2694 -0.0057
6 7 4.2872 0.1858 0.1052
7 6 5.5140 0.6206 0.0629
8 6 5.4861 2.0288 -0.0791
9 6 6.6207 2.8982 -0.1648
10 7 7.5208 3.5876 -0.2356
11 6 4.1486 2.4079 -0.1264
12 7 3.6636 3.6912 -0.2647
13 6 4.6204 4.6750 0.2592
14 1 5.5756 4.5616 -0.2534
15 6 4.8165 4.4468 1.7594
16 6 4.0801 6.0870 0.0245
17 6 4.0018 6.3596 -1.4789
18 6 3.4690 7.7503 -1.7102
19 1 3.2124 8.3770 -0.8689
20 6 3.3102 8.2227 -2.9957
21 7 3.6231 7.4596 -4.0201
22 14 2.6505 9.9467 -3.2823
23 1 3.7818 10.9072 -3.3345
24 1 1.9084 9.9854 -4.5680
25 1 1.7368 10.3180 -2.1721
26 1 -0.3633 0.5139 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 6.4026 0.0100 0.1256
30 1 3.4324 3.8886 -1.2268
31 1 5.5261 5.1770 2.1483
32 1 3.8612 4.5601 2.2721
33 1 5.2014 3.4408 1.9266
34 1 3.0853 6.1727 0.4617
35 1 4.7459 6.8130 0.4912
36 1 4.9965 6.2739 -1.9161
37 1 3.3360 5.6337 -1.9457
38 1 3.5110 7.7920 -4.9245
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172490155.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 06:36:46
Heat of formation + Delta-G solvation = 43.339004 kcal
Electronic energy + Delta-G solvation = -23349.200298 eV
Core-core repulsion = 19808.957403 eV
Total energy + Delta-G solvation = -3540.242895 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.40781 -40.27830 -37.99124 -36.92530 -36.14085 -33.60711 -33.07780 -31.87313
-29.38627 -28.96203 -28.06959 -25.27687 -24.49981 -22.99534 -21.67616 -20.74476
-19.81963 -19.30523 -17.69976 -17.43043 -17.15072 -16.61164 -16.00831 -15.84553
-14.98475 -14.73846 -14.47087 -14.16656 -13.82464 -13.47356 -13.04403 -12.94775
-12.81302 -12.58866 -12.47783 -12.43061 -12.00982 -11.78490 -11.50126 -11.37495
-11.17231 -11.14203 -10.95740 -10.76522 -10.51394 -10.34741 -9.92820 -9.45040
-9.38420 -9.14306 -8.43292 -8.35748 -6.04695 -4.06897 0.56167 1.14982
1.77159 2.53050 2.66208 3.03414 3.30531 3.36832 3.40329 3.48350
3.68434 3.93447 4.43007 4.53511 4.65687 4.82269 4.93031 5.06453
5.14740 5.21199 5.28815 5.32018 5.50397 5.66833 5.78300 5.90076
6.05413 6.23315 6.26091 6.36073 6.65609 6.71418 6.91549 6.99704
7.13401 7.54551 7.61000 7.65371 7.68461 7.92681 8.35576 8.98754
9.57667 11.06715
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.014764 B = 0.004597 C = 0.003848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1896.016025 B = 6088.915527 C = 7275.319850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.049 3.951
2 O -0.339 6.339
3 C 0.677 3.323
4 O -0.482 6.482
5 N -0.345 5.345
6 N -0.267 5.267
7 C 0.144 3.856
8 C -0.224 4.224
9 C 0.292 3.708
10 N -0.414 5.414
11 C 0.396 3.604
12 N -0.595 5.595
13 C 0.074 3.926
14 H 0.066 0.934
15 C -0.151 4.151
16 C -0.106 4.106
17 C 0.019 3.981
18 C -0.519 4.519
19 H 0.057 0.943
20 C 0.058 3.942
21 N -0.895 5.895
22 Si 0.893 3.107
23 H -0.280 1.280
24 H -0.286 1.286
25 H -0.273 1.273
26 H 0.071 0.929
27 H 0.110 0.890
28 H 0.069 0.931
29 H 0.208 0.792
30 H 0.393 0.607
31 H 0.068 0.932
32 H 0.066 0.934
33 H 0.050 0.950
34 H 0.065 0.935
35 H 0.065 0.935
36 H 0.015 0.985
37 H 0.015 0.985
38 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.512 -17.775 9.284 20.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 O -0.252 6.252
3 C 0.433 3.567
4 O -0.361 6.361
5 N -0.149 5.149
6 N -0.085 5.085
7 C -0.050 4.050
8 C -0.242 4.242
9 C -0.022 4.022
10 N -0.091 5.091
11 C 0.172 3.828
12 N -0.235 5.235
13 C -0.034 4.034
14 H 0.083 0.917
15 C -0.209 4.209
16 C -0.144 4.144
17 C -0.019 4.019
18 C -0.557 4.557
19 H 0.075 0.925
20 C -0.144 4.144
21 N -0.534 5.534
22 Si 0.721 3.279
23 H -0.207 1.207
24 H -0.212 1.212
25 H -0.198 1.198
26 H 0.089 0.911
27 H 0.129 0.871
28 H 0.088 0.912
29 H 0.225 0.775
30 H 0.231 0.769
31 H 0.087 0.913
32 H 0.085 0.915
33 H 0.069 0.931
34 H 0.084 0.916
35 H 0.084 0.916
36 H 0.033 0.967
37 H 0.033 0.967
38 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -1.845 -17.320 9.573 19.875
hybrid contribution 0.068 1.342 -0.933 1.636
sum -1.776 -15.978 8.640 18.251
Atomic orbital electron populations
1.23460 0.73279 1.04379 1.03446 1.86391 1.24594 1.28887 1.85310
1.17406 0.80124 0.83348 0.75825 1.91218 1.61487 1.34865 1.48541
1.45687 1.04292 1.05985 1.58899 1.77465 0.99198 1.06819 1.25032
1.24183 0.96179 0.91776 0.92898 1.16097 0.87540 0.92585 1.27981
1.23921 0.92103 0.92566 0.93659 1.81363 1.10426 1.07295 1.10024
1.19618 0.87083 0.85831 0.90223 1.56605 1.43194 0.96567 1.27123
1.22265 0.93104 0.92556 0.95450 0.91686 1.21981 1.02565 1.01428
0.94918 1.21777 1.00759 0.90424 1.01428 1.19153 0.96908 0.97063
0.88730 1.21166 1.43087 0.99413 0.92058 0.92516 1.25014 0.95501
0.97606 0.96237 1.69951 1.48526 1.36509 0.98462 0.86577 0.79047
0.84683 0.77612 1.20656 1.21221 1.19820 0.91075 0.87125 0.91201
0.77526 0.76853 0.91343 0.91514 0.93103 0.91635 0.91640 0.96678
0.96713 0.92957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.38 10.56 101.05 1.07 1.44 16
2 O -0.34 -3.98 10.44 -40.12 -0.42 -4.40 16
3 C 0.68 9.64 8.67 54.05 0.47 10.11 16
4 O -0.48 -7.94 15.55 -19.22 -0.30 -8.24 16
5 N -0.35 -4.79 3.64 -15.36 -0.06 -4.85 16
6 N -0.27 -3.20 12.25 30.88 0.38 -2.82 16
7 C 0.14 1.40 11.98 -16.96 -0.20 1.20 16
8 C -0.22 -2.83 4.93 -106.39 -0.52 -3.35 16
9 C 0.29 4.19 11.60 -22.48 -0.26 3.92 16
10 N -0.41 -6.80 17.89 41.84 0.75 -6.05 16
11 C 0.40 5.73 6.32 -152.65 -0.96 4.76 16
12 N -0.59 -9.79 5.24 -53.02 -0.28 -10.07 16
13 C 0.07 1.25 2.21 -67.71 -0.15 1.10 16
14 H 0.07 1.16 4.43 -51.93 -0.23 0.93 16
15 C -0.15 -2.19 8.63 37.16 0.32 -1.87 16
16 C -0.11 -2.12 4.83 -26.73 -0.13 -2.25 16
17 C 0.02 0.46 4.75 -27.88 -0.13 0.33 16
18 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16
19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16
20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
21 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16
22 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
27 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16
30 H 0.39 6.94 6.91 -39.29 -0.27 6.67 16
31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.05 0.68 5.99 -51.93 -0.31 0.37 16
34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.01 0.38 6.62 -51.93 -0.34 0.04 16
38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 331.37 15.07 4.99 4.99
Total: -1.00 -32.94 331.37 -4.64 -37.58
By element:
Atomic # 1 Polarization: 5.48 SS G_CDS: -4.50 Total: 0.98 kcal
Atomic # 6 Polarization: 3.03 SS G_CDS: -0.92 Total: 2.11 kcal
Atomic # 7 Polarization: -51.21 SS G_CDS: 1.53 Total: -49.68 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: -0.72 Total: -12.63 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -32.94 -4.64 -37.58 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172490155.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.919 kcal
(2) G-P(sol) polarization free energy of solvation -32.944 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds