Wall clock time and date at job start Tue Mar 31 2020 06:36:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34565 * 117.00520 * 2 1
4 4 O 1.21429 * 119.99733 * 359.97438 * 3 2 1
5 5 N 1.34772 * 120.00027 * 180.28107 * 3 2 1
6 6 N 1.39925 * 125.87612 * 354.06665 * 5 3 2
7 7 C 1.30231 * 109.28146 * 180.02562 * 6 5 3
8 8 C 1.41561 * 108.46822 * 0.02562 * 7 6 5
9 9 C 1.43195 * 126.46640 * 179.97438 * 8 7 6
10 10 N 7.05379 * 149.35647 * 356.24272 * 2 1 3
11 11 C 1.36314 * 125.86982 * 173.76350 * 5 3 2
12 12 N 1.37880 * 126.53733 * 359.97438 * 11 5 3
13 13 C 1.46898 * 111.00089 * 152.92879 * 12 11 5
14 14 H 1.09000 * 109.47500 * 57.14920 * 13 12 11
15 15 C 1.53001 * 109.46971 * 297.15397 * 13 12 11
16 16 C 1.52999 * 109.47349 * 177.15328 * 13 12 11
17 17 C 1.52995 * 109.46845 * 294.99744 * 16 13 12
18 18 C 1.50706 * 109.47052 * 179.97438 * 17 16 13
19 19 H 1.07996 * 119.99755 * 0.02562 * 18 17 16
20 20 C 1.37879 * 119.99873 * 179.97438 * 18 17 16
21 21 N 1.31514 * 120.00091 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 119.99659 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47134 * 90.00291 * 22 20 18
24 24 H 1.48503 * 109.47378 * 210.00448 * 22 20 18
25 25 H 1.48498 * 109.47600 * 330.00336 * 22 20 18
26 26 H 1.09001 * 109.47124 * 59.99405 * 1 2 3
27 27 H 1.08991 * 109.47092 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46702 * 300.00180 * 1 2 3
29 29 H 1.07992 * 125.76828 * 180.02562 * 7 6 5
30 30 H 1.00900 * 110.99768 * 276.87693 * 12 11 5
31 31 H 1.08993 * 109.47482 * 180.02562 * 15 13 12
32 32 H 1.09006 * 109.46994 * 300.00237 * 15 13 12
33 33 H 1.09000 * 109.47099 * 59.99599 * 15 13 12
34 34 H 1.09005 * 109.47070 * 54.99552 * 16 13 12
35 35 H 1.09001 * 109.47222 * 174.99948 * 16 13 12
36 36 H 1.08998 * 109.47468 * 299.99962 * 17 16 13
37 37 H 1.09000 * 109.47565 * 60.00027 * 17 16 13
38 38 H 0.97003 * 119.99486 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0630 1.1989 0.0000
4 8 1.4017 2.2173 -0.0005
5 7 3.4089 1.2694 -0.0057
6 7 4.2872 0.1858 0.1052
7 6 5.5140 0.6206 0.0629
8 6 5.4861 2.0288 -0.0791
9 6 6.6207 2.8982 -0.1648
10 7 7.5208 3.5876 -0.2356
11 6 4.1486 2.4079 -0.1264
12 7 3.6636 3.6912 -0.2647
13 6 4.6204 4.6750 0.2592
14 1 5.5756 4.5616 -0.2534
15 6 4.8165 4.4468 1.7594
16 6 4.0801 6.0870 0.0245
17 6 4.0018 6.3596 -1.4789
18 6 3.4690 7.7503 -1.7102
19 1 3.2124 8.3770 -0.8689
20 6 3.3102 8.2227 -2.9957
21 7 3.6231 7.4596 -4.0201
22 14 2.6505 9.9467 -3.2823
23 1 3.7818 10.9072 -3.3345
24 1 1.9084 9.9854 -4.5680
25 1 1.7368 10.3180 -2.1721
26 1 -0.3633 0.5139 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 6.4026 0.0100 0.1256
30 1 3.4324 3.8886 -1.2268
31 1 5.5261 5.1770 2.1483
32 1 3.8612 4.5601 2.2721
33 1 5.2014 3.4408 1.9266
34 1 3.0853 6.1727 0.4617
35 1 4.7459 6.8130 0.4912
36 1 4.9965 6.2739 -1.9161
37 1 3.3360 5.6337 -1.9457
38 1 3.5110 7.7920 -4.9245
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172490155.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 06:36:46
Heat of formation + Delta-G solvation = 21.442429 kcal
Electronic energy + Delta-G solvation = -23350.149805 eV
Core-core repulsion = 19808.957403 eV
Total energy + Delta-G solvation = -3541.192402 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-43.44836 -41.29281 -39.27160 -37.93553 -37.38506 -35.49605 -34.16342 -33.48678
-31.03258 -30.08074 -28.81146 -27.12387 -25.55055 -24.06252 -23.38461 -21.79142
-21.31732 -20.39501 -18.90007 -18.49233 -18.37920 -18.17337 -17.44083 -16.95119
-16.57798 -15.98467 -15.68256 -15.10370 -14.93482 -14.69560 -14.56902 -14.37798
-14.23146 -14.01481 -13.78826 -13.34080 -13.23165 -13.19917 -13.05101 -12.86621
-12.66780 -12.37498 -12.26888 -12.13024 -11.98942 -11.87425 -11.39728 -11.30135
-11.10527 -10.64233 -10.57142 -9.57517 -8.22756 -6.32880 -0.54166 0.15675
0.83558 1.38624 1.39327 1.48405 1.50503 1.54269 2.05758 2.35939
2.39128 2.60403 2.82215 3.11433 3.50959 3.66944 3.81682 3.87284
4.14995 4.21498 4.28772 4.31650 4.52990 4.62306 4.67487 4.75481
4.79330 4.88323 4.98145 5.09194 5.15695 5.33015 5.43264 5.49752
5.68861 5.71618 5.79688 6.01670 6.21377 6.46179 6.64623 6.82436
7.36310 8.88844
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.014764 B = 0.004597 C = 0.003848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1896.016025 B = 6088.915527 C = 7275.319850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.339 6.339
3 C 0.676 3.324
4 O -0.514 6.514
5 N -0.351 5.351
6 N -0.273 5.273
7 C 0.170 3.830
8 C -0.217 4.217
9 C 0.310 3.690
10 N -0.450 5.450
11 C 0.377 3.623
12 N -0.605 5.605
13 C 0.083 3.917
14 H 0.056 0.944
15 C -0.143 4.143
16 C -0.093 4.093
17 C 0.026 3.974
18 C -0.542 4.542
19 H 0.060 0.940
20 C 0.002 3.998
21 N -0.931 5.931
22 Si 0.962 3.038
23 H -0.273 1.273
24 H -0.282 1.282
25 H -0.264 1.264
26 H 0.067 0.933
27 H 0.148 0.852
28 H 0.071 0.929
29 H 0.259 0.741
30 H 0.381 0.619
31 H 0.076 0.924
32 H 0.067 0.933
33 H 0.063 0.937
34 H 0.063 0.937
35 H 0.068 0.932
36 H -0.014 1.014
37 H 0.000 1.000
38 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.470 -18.936 10.333 21.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 O -0.251 6.251
3 C 0.433 3.567
4 O -0.396 6.396
5 N -0.153 5.153
6 N -0.090 5.090
7 C -0.024 4.024
8 C -0.235 4.235
9 C -0.003 4.003
10 N -0.128 5.128
11 C 0.155 3.845
12 N -0.243 5.243
13 C -0.025 4.025
14 H 0.073 0.927
15 C -0.200 4.200
16 C -0.131 4.131
17 C -0.011 4.011
18 C -0.580 4.580
19 H 0.078 0.922
20 C -0.196 4.196
21 N -0.571 5.571
22 Si 0.787 3.213
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.188 1.188
26 H 0.086 0.914
27 H 0.166 0.834
28 H 0.090 0.910
29 H 0.275 0.725
30 H 0.217 0.783
31 H 0.095 0.905
32 H 0.086 0.914
33 H 0.082 0.918
34 H 0.081 0.919
35 H 0.086 0.914
36 H 0.005 0.995
37 H 0.018 0.982
38 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.803 -18.516 10.653 21.438
hybrid contribution 0.048 1.592 -1.285 2.046
sum -1.755 -16.925 9.368 19.424
Atomic orbital electron populations
1.23839 0.71205 1.06815 1.03420 1.86413 1.26571 1.27435 1.84688
1.17580 0.80268 0.83655 0.75219 1.91192 1.62218 1.36008 1.50166
1.45760 1.04488 1.06104 1.58984 1.77516 0.99683 1.06210 1.25556
1.24954 0.96875 0.90441 0.90138 1.16192 0.86157 0.93814 1.27326
1.24042 0.91757 0.91909 0.92638 1.81383 1.11855 1.08257 1.11265
1.19631 0.87961 0.85372 0.91573 1.56508 1.43560 0.97691 1.26531
1.22070 0.92347 0.90919 0.97168 0.92681 1.21910 1.02959 1.02436
0.92705 1.21551 1.00936 0.92904 0.97723 1.19005 0.94561 0.95671
0.91871 1.21639 1.43101 1.00786 0.92438 0.92208 1.25922 0.95720
1.01895 0.96016 1.70078 1.49612 1.38524 0.98906 0.85490 0.78608
0.79496 0.77734 1.19895 1.20753 1.18797 0.91386 0.83394 0.91025
0.72522 0.78349 0.90493 0.91370 0.91843 0.91871 0.91364 0.99531
0.98181 0.92813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.57 10.56 113.37 1.20 1.77 16
2 O -0.34 -7.57 10.44 -54.74 -0.57 -8.14 16
3 C 0.68 19.03 8.67 129.79 1.13 20.16 16
4 O -0.51 -17.22 15.55 20.07 0.31 -16.91 16
5 N -0.35 -9.40 3.64 -433.00 -1.57 -10.97 16
6 N -0.27 -5.85 12.25 -56.21 -0.69 -6.54 16
7 C 0.17 2.74 11.98 85.75 1.03 3.77 16
8 C -0.22 -5.11 4.93 -21.01 -0.10 -5.21 16
9 C 0.31 8.54 11.60 88.33 1.02 9.56 16
10 N -0.45 -14.53 17.89 19.00 0.34 -14.19 16
11 C 0.38 10.71 6.32 132.22 0.84 11.54 16
12 N -0.60 -20.28 5.24 -321.67 -1.69 -21.97 16
13 C 0.08 2.82 2.21 44.92 0.10 2.92 16
14 H 0.06 1.99 4.43 -2.39 -0.01 1.98 16
15 C -0.14 -3.96 8.63 71.98 0.62 -3.34 16
16 C -0.09 -3.81 4.83 30.59 0.15 -3.66 16
17 C 0.03 1.35 4.75 29.85 0.14 1.49 16
18 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16
19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16
20 C 0.00 0.14 5.46 84.66 0.46 0.60 16
21 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16
22 Si 0.96 44.67 29.54 68.60 2.03 46.70 16
23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16
24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
25 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16
26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.26 1.29 8.06 -2.91 -0.02 1.26 16
30 H 0.38 14.16 6.91 -89.69 -0.62 13.54 16
31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16
33 H 0.06 1.60 5.99 -2.39 -0.01 1.58 16
34 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16
35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16
36 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16
37 H 0.00 0.00 6.62 -2.39 -0.02 -0.02 16
38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16
Total: -1.00 -72.70 331.37 5.74 -66.95
By element:
Atomic # 1 Polarization: 11.91 SS G_CDS: 0.49 Total: 12.39 kcal
Atomic # 6 Polarization: 2.16 SS G_CDS: 6.81 Total: 8.97 kcal
Atomic # 7 Polarization: -106.64 SS G_CDS: -3.32 Total: -109.96 kcal
Atomic # 8 Polarization: -24.80 SS G_CDS: -0.26 Total: -25.06 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -72.70 5.74 -66.95 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172490155.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.394 kcal
(2) G-P(sol) polarization free energy of solvation -72.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds