Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30171 * 126.80799 * 2 1 4 4 O 1.20899 * 111.73998 * 180.29986 * 3 2 1 5 5 C 1.34289 * 111.62974 * 359.72674 * 4 3 2 6 6 C 1.50694 * 126.82455 * 180.02562 * 5 4 3 7 7 C 1.35861 * 106.35927 * 359.97438 * 5 4 3 8 8 N 1.40772 * 128.05811 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00090 * 126.84088 * 8 7 5 10 10 O 1.21599 * 119.99999 * 0.89117 * 9 8 7 11 11 N 1.34774 * 120.00215 * 180.89341 * 9 8 7 12 12 C 1.46499 * 120.00258 * 179.72028 * 11 9 8 13 13 C 1.50696 * 109.47057 * 90.00014 * 12 11 9 14 14 H 1.07996 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00364 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00286 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99578 * 359.97438 * 15 13 12 18 18 H 1.48511 * 109.46762 * 90.00460 * 17 15 13 19 19 H 1.48497 * 109.47101 * 209.99702 * 17 15 13 20 20 H 1.48494 * 109.47491 * 330.00477 * 17 15 13 21 21 C 1.46501 * 119.99848 * 0.02562 * 11 9 8 22 22 C 1.53000 * 109.47546 * 89.99662 * 21 11 9 23 23 C 1.47197 * 109.47173 * 179.97438 * 22 21 11 24 24 N 7.81145 * 105.93450 * 190.10492 * 2 1 3 25 25 H 1.08994 * 109.47459 * 277.64303 * 1 2 3 26 26 H 1.08996 * 109.47029 * 37.64280 * 1 2 3 27 27 H 1.09007 * 109.47258 * 157.64095 * 1 2 3 28 28 H 1.09009 * 109.47177 * 269.97890 * 6 5 4 29 29 H 1.09004 * 109.46811 * 29.97101 * 6 5 4 30 30 H 1.09000 * 109.47919 * 149.97730 * 6 5 4 31 31 H 0.97001 * 120.00475 * 306.83579 * 8 7 5 32 32 H 1.09000 * 109.47423 * 210.00139 * 12 11 9 33 33 H 1.09000 * 109.47172 * 330.00414 * 12 11 9 34 34 H 0.97003 * 120.00131 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.46723 * 209.99495 * 21 11 9 36 36 H 1.09001 * 109.47028 * 329.99557 * 21 11 9 37 37 H 1.08994 * 109.47081 * 300.00447 * 22 21 11 38 38 H 1.09001 * 109.47042 * 59.99904 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7279 -0.0059 5 6 3.6078 -0.6062 -0.0048 6 6 4.9094 -1.3656 -0.0102 7 6 2.3565 -1.1353 0.0034 8 7 1.9889 -2.4942 0.0071 9 6 1.1431 -2.9609 0.9469 10 8 0.6847 -2.2049 1.7817 11 7 0.8053 -4.2655 0.9614 12 6 -0.1093 -4.7741 1.9866 13 6 -1.5282 -4.6717 1.4893 14 1 -1.7286 -4.2686 0.5077 15 6 -2.5706 -5.0927 2.2876 16 7 -3.8088 -5.0038 1.8534 17 14 -2.2240 -5.7906 3.9853 18 1 -2.2311 -4.6910 4.9834 19 1 -3.2710 -6.7837 4.3355 20 1 -0.8943 -6.4518 3.9867 21 6 1.3580 -5.1765 -0.0441 22 6 2.6682 -5.7734 0.4736 23 6 3.2231 -6.6891 -0.5364 24 7 3.6516 -7.3948 -1.3179 25 1 -0.3634 0.1367 1.0185 26 1 -0.3633 0.8137 -0.6276 27 1 -0.3634 -0.9505 -0.3910 28 1 5.2179 -1.5505 -1.0392 29 1 5.6744 -0.7790 0.4986 30 1 4.7775 -2.3165 0.5060 31 1 2.3443 -3.0947 -0.6667 32 1 0.1268 -5.8167 2.1993 33 1 0.0002 -4.1838 2.8963 34 1 -4.5422 -5.2996 2.4152 35 1 0.6454 -5.9781 -0.2388 36 1 1.5483 -4.6275 -0.9663 37 1 3.3806 -4.9719 0.6685 38 1 2.4779 -6.3224 1.3958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185172144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = 67.342166 kcal Electronic energy + Delta-G solvation = -23494.416491 eV Core-core repulsion = 19955.214451 eV Total energy + Delta-G solvation = -3539.202040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.81375 -40.00163 -37.10691 -35.98006 -35.17218 -33.80827 -32.92236 -32.07711 -31.13514 -28.43347 -28.18512 -27.28035 -24.31773 -23.42249 -21.84108 -20.46935 -19.57663 -18.18895 -17.75640 -17.47952 -17.25513 -16.86991 -15.98634 -15.20716 -14.99223 -14.64949 -14.29973 -13.89740 -13.82202 -13.50919 -13.41823 -13.06764 -12.91623 -12.74430 -12.64778 -12.53227 -12.40933 -12.24835 -12.01908 -11.66104 -11.25574 -11.19026 -11.00481 -10.61741 -10.33488 -10.18897 -9.74773 -9.55226 -9.47927 -8.66389 -8.61012 -7.98864 -6.15828 -4.15732 1.43579 2.25893 2.54841 2.66025 2.71896 3.22905 3.26367 3.29461 3.33563 3.56924 3.75968 4.25520 4.32387 4.46591 4.48816 4.81296 4.91524 5.02380 5.16225 5.19170 5.21245 5.23343 5.39361 5.58874 5.70037 5.75908 5.87475 5.89084 6.02678 6.29734 6.43397 6.68365 6.71322 7.02776 7.25505 7.42711 7.50935 8.21063 8.36154 8.38133 8.86785 8.96628 9.43424 10.97323 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.005791 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.790716 B = 4833.762753 C = 6558.614804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.042 3.958 3 N -0.366 5.366 4 O 0.098 5.902 5 C -0.060 4.060 6 C -0.067 4.067 7 C 0.063 3.937 8 N -0.669 5.669 9 C 0.705 3.295 10 O -0.556 6.556 11 N -0.600 5.600 12 C 0.230 3.770 13 C -0.533 4.533 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.117 3.883 22 C -0.052 4.052 23 C 0.213 3.787 24 N -0.439 5.439 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.403 0.597 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.270 3.368 -3.886 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 N -0.074 5.074 4 O 0.037 5.963 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.036 4.036 8 N -0.325 5.325 9 C 0.407 3.593 10 O -0.430 6.430 11 N -0.335 5.335 12 C 0.110 3.890 13 C -0.571 4.571 14 H 0.094 0.906 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.010 4.010 22 C -0.094 4.094 23 C -0.105 4.105 24 N -0.116 5.116 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.106 4.099 -4.321 17.172 hybrid contribution -0.173 -1.285 0.843 1.547 sum 15.933 2.813 -3.478 16.549 Atomic orbital electron populations 1.20118 0.85233 1.03135 1.03962 1.23592 0.99348 0.87956 1.00968 1.73802 0.89146 1.23432 1.21023 1.84845 1.21562 1.21267 1.68647 1.24034 0.97444 0.84528 1.06643 1.20245 0.89962 0.98573 1.03656 1.17671 0.90789 0.85788 1.09365 1.42044 1.51387 1.05718 1.33366 1.15820 0.79126 0.82947 0.81404 1.90958 1.56702 1.55485 1.39880 1.47145 1.48360 1.04939 1.33021 1.19687 0.88590 0.94031 0.86692 1.21304 0.88663 1.42775 1.04377 0.90617 1.24836 0.94873 0.95213 0.97915 1.69885 0.98703 1.47203 1.37469 0.86897 0.78375 0.79413 0.85227 1.19889 1.21116 1.18978 1.21303 0.93312 0.95451 0.90907 1.19918 0.98299 0.96186 0.94966 1.29067 0.93395 0.93914 0.94111 1.81270 1.09448 1.10328 1.10568 0.89334 0.91264 0.90168 0.89739 0.89738 0.89424 0.75894 0.94750 0.94086 0.92477 0.87974 0.90974 0.87575 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 9.10 36.01 0.33 -0.75 16 2 C 0.04 0.68 6.96 -81.94 -0.57 0.11 16 3 N -0.37 -5.80 12.06 33.56 0.40 -5.40 16 4 O 0.10 1.34 11.20 16.52 0.19 1.53 16 5 C -0.06 -0.70 7.51 -35.16 -0.26 -0.96 16 6 C -0.07 -0.45 10.45 36.00 0.38 -0.08 16 7 C 0.06 0.89 6.36 -83.24 -0.53 0.36 16 8 N -0.67 -8.81 5.34 -13.99 -0.07 -8.89 16 9 C 0.71 12.28 7.86 -86.92 -0.68 11.59 16 10 O -0.56 -12.28 14.32 5.28 0.08 -12.21 16 11 N -0.60 -9.92 2.46 -180.80 -0.44 -10.36 16 12 C 0.23 4.81 4.23 -5.20 -0.02 4.79 16 13 C -0.53 -13.85 9.94 -34.44 -0.34 -14.19 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 17 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -5.55 6.54 56.52 0.37 -5.18 16 21 C 0.12 1.34 5.13 -4.04 -0.02 1.32 16 22 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 23 C 0.21 2.17 15.44 -20.74 -0.32 1.85 16 24 N -0.44 -5.74 18.54 42.18 0.78 -4.96 16 25 H 0.09 1.56 8.09 -51.93 -0.42 1.14 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.37 7.92 -51.92 -0.41 0.96 16 28 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.40 3.89 6.55 -40.82 -0.27 3.62 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.07 0.67 6.35 -51.93 -0.33 0.34 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -34.33 336.77 -4.92 -39.25 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.70 Total: 0.63 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.32 Total: 5.37 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 1.44 Total: -55.03 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.26 Total: -10.68 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.33 -4.92 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185172144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.592 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds