Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99813 * 2 1 4 4 O 1.21277 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00157 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47210 * 59.99446 * 5 3 2 7 7 C 1.53002 * 109.47199 * 299.99699 * 5 3 2 8 8 N 1.46504 * 109.47283 * 179.97438 * 5 3 2 9 9 C 1.34778 * 119.99754 * 205.00045 * 8 5 3 10 10 O 1.21575 * 120.00108 * 359.97438 * 9 8 5 11 11 N 1.34780 * 119.99820 * 179.97438 * 9 8 5 12 12 C 1.39240 * 119.99933 * 185.78817 * 11 9 8 13 13 C 1.39684 * 119.57882 * 18.76112 * 12 11 9 14 14 C 1.38646 * 119.49834 * 180.02562 * 13 12 11 15 15 C 1.38357 * 118.66902 * 359.97438 * 14 13 12 16 16 C 1.40574 * 119.13357 * 0.02562 * 15 14 13 17 17 C 1.41326 * 119.78807 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00205 * 8.92754 * 17 16 15 19 19 C 1.40030 * 119.99834 * 188.92094 * 17 16 15 20 20 N 1.30744 * 119.99922 * 196.05781 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 16.06713 * 19 17 16 22 22 H 1.48500 * 109.47234 * 269.99585 * 21 19 17 23 23 H 1.48501 * 109.47298 * 29.99499 * 21 19 17 24 24 H 1.48497 * 109.47441 * 149.99607 * 21 19 17 25 25 N 1.31912 * 119.57331 * 199.03646 * 12 11 9 26 26 H 1.09002 * 109.47138 * 60.00649 * 1 2 3 27 27 H 1.08999 * 109.46659 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47543 * 299.99953 * 1 2 3 29 29 H 0.96994 * 120.00496 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 7 5 3 31 31 H 1.09001 * 109.47149 * 300.00377 * 7 5 3 32 32 H 1.08999 * 109.47197 * 60.00054 * 7 5 3 33 33 H 0.96993 * 119.99827 * 24.99234 * 8 5 3 34 34 H 0.97006 * 119.99774 * 5.78688 * 11 9 8 35 35 H 1.07996 * 120.25248 * 0.02590 * 13 12 11 36 36 H 1.07998 * 120.66274 * 179.97438 * 14 13 12 37 37 H 1.07998 * 120.43474 * 180.02562 * 15 14 13 38 38 H 0.97003 * 120.00130 * 354.94141 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0088 0.6536 -0.8908 7 6 4.1563 0.4459 1.2483 8 7 4.1341 2.5486 -0.0011 9 6 5.3559 2.8312 -0.4949 10 8 6.0529 1.9399 -0.9395 11 7 5.8049 4.1020 -0.4959 12 6 7.0134 4.4129 -1.1137 13 6 7.5570 3.5293 -2.0489 14 6 8.7607 3.8402 -2.6627 15 6 9.3901 5.0258 -2.3271 16 6 8.7922 5.8733 -1.3783 17 6 9.4233 7.0874 -1.0248 18 1 10.2819 7.4320 -1.5821 19 6 8.9355 7.8436 0.0481 20 7 9.2986 9.0920 0.1865 21 14 7.7663 7.0687 1.2817 22 1 6.3660 7.2669 0.8285 23 1 8.0510 5.6152 1.3882 24 1 7.9520 7.7081 2.6090 25 7 7.6329 5.5356 -0.8041 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2463 0.4456 1.2477 31 1 3.7933 0.9595 2.1386 32 1 3.7931 -0.5818 1.2483 33 1 3.5780 3.2597 0.3539 34 1 5.2861 4.8000 -0.0661 35 1 7.0436 2.6108 -2.2922 36 1 9.1982 3.1705 -3.3882 37 1 10.3285 5.2965 -2.7880 38 1 9.9617 9.4732 -0.4101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219939391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = -33.036816 kcal Electronic energy + Delta-G solvation = -22897.882454 eV Core-core repulsion = 19354.327655 eV Total energy + Delta-G solvation = -3543.554799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.73111 -39.79072 -38.23217 -35.34856 -35.05142 -34.41132 -33.48066 -31.13669 -30.97867 -29.05182 -27.25994 -25.33382 -24.44057 -22.27901 -21.67922 -20.62526 -20.33608 -18.91294 -18.11248 -17.67209 -16.59652 -16.34168 -15.94474 -15.33665 -14.96146 -14.84336 -14.70198 -14.19243 -13.91087 -13.62371 -13.50322 -13.10207 -12.81401 -12.65532 -12.60062 -12.48081 -12.18611 -11.92450 -11.79890 -11.19052 -10.84443 -10.29742 -10.21762 -9.95695 -9.75322 -9.58022 -9.44033 -9.13720 -9.03530 -8.46252 -7.86528 -7.34333 -7.22837 -4.71275 2.22051 2.32939 2.51366 2.72776 2.99374 3.41198 3.51345 3.66553 3.93301 4.22238 4.33029 4.37364 4.64451 4.77739 4.82002 4.89466 5.10555 5.26393 5.39218 5.51457 5.59123 5.87501 5.90418 5.93126 6.13641 6.24841 6.46445 6.59263 6.69205 6.93739 7.00259 7.21621 7.37838 7.48472 7.66918 7.75895 7.81404 7.94951 8.23504 8.37726 8.66864 8.75723 9.49351 10.01516 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003811 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.842999 B = 7345.454895 C = 8060.598200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.511 3.489 4 O -0.531 6.531 5 C 0.147 3.853 6 H 0.118 0.882 7 C -0.161 4.161 8 N -0.731 5.731 9 C 0.715 3.285 10 O -0.565 6.565 11 N -0.664 5.664 12 C 0.401 3.599 13 C -0.310 4.310 14 C -0.036 4.036 15 C -0.281 4.281 16 C 0.276 3.724 17 C -0.482 4.482 18 H 0.084 0.916 19 C 0.049 3.951 20 N -0.805 5.805 21 Si 1.143 2.857 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.327 1.327 25 N -0.597 5.597 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.405 0.595 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.406 0.594 34 H 0.405 0.595 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 -17.543 1.934 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.296 3.704 4 O -0.407 6.407 5 C 0.037 3.963 6 H 0.135 0.865 7 C -0.220 4.220 8 N -0.390 5.390 9 C 0.415 3.585 10 O -0.441 6.441 11 N -0.311 5.311 12 C 0.169 3.831 13 C -0.335 4.335 14 C -0.060 4.060 15 C -0.303 4.303 16 C 0.152 3.848 17 C -0.515 4.515 18 H 0.102 0.898 19 C -0.172 4.172 20 N -0.427 5.427 21 Si 0.976 3.024 22 H -0.215 1.215 23 H -0.207 1.207 24 H -0.260 1.260 25 N -0.322 5.322 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.239 0.761 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.240 0.760 35 H 0.158 0.842 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.694 -16.621 3.366 23.106 hybrid contribution 1.080 -0.434 -1.747 2.100 sum -14.614 -17.055 1.618 22.518 Atomic orbital electron populations 1.21569 0.79151 1.02401 1.02566 1.45703 1.07947 1.08604 1.76154 1.20746 0.89993 0.83983 0.75644 1.90725 1.70050 1.31202 1.48713 1.20529 0.89573 0.84163 1.02002 0.86465 1.22189 1.03759 0.99641 0.96421 1.44802 1.17227 1.09088 1.67836 1.15578 0.81329 0.82816 0.78788 1.90842 1.56134 1.45582 1.51577 1.42275 1.22230 1.08429 1.58176 1.17775 0.84399 0.91488 0.89456 1.21527 1.01488 1.04492 1.05960 1.20908 0.93942 0.95128 0.96054 1.21594 1.03022 0.97860 1.07832 1.18164 0.86385 0.91950 0.88312 1.20643 1.13417 1.03447 1.13946 0.89843 1.27648 0.98028 0.92932 0.98634 1.70618 1.22815 1.11852 1.37420 0.82132 0.74847 0.74586 0.70786 1.21522 1.20704 1.25993 1.66130 1.13342 1.19905 1.32775 0.92045 0.90450 0.92047 0.76112 0.90115 0.91763 0.91231 0.75727 0.76016 0.84207 0.87721 0.87774 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.84 0.64 1.12 16 2 N -0.73 -4.72 5.61 -67.08 -0.38 -5.10 16 3 C 0.51 5.19 7.22 -10.99 -0.08 5.11 16 4 O -0.53 -7.36 15.84 5.56 0.09 -7.27 16 5 C 0.15 1.53 2.98 -69.08 -0.21 1.32 16 6 H 0.12 1.23 7.58 -51.93 -0.39 0.84 16 7 C -0.16 -1.37 9.38 37.16 0.35 -1.02 16 8 N -0.73 -9.72 4.96 -59.81 -0.30 -10.02 16 9 C 0.71 12.44 8.37 -86.91 -0.73 11.71 16 10 O -0.57 -11.13 12.80 5.30 0.07 -11.06 16 11 N -0.66 -12.86 5.42 -15.78 -0.09 -12.94 16 12 C 0.40 9.44 7.51 -154.99 -1.16 8.28 16 13 C -0.31 -7.14 8.83 -38.89 -0.34 -7.48 16 14 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 15 C -0.28 -6.83 9.83 -38.66 -0.38 -7.21 16 16 C 0.28 7.39 6.27 -85.00 -0.53 6.86 16 17 C -0.48 -13.32 9.51 -37.74 -0.36 -13.68 16 18 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 19 C 0.05 1.35 5.51 -17.34 -0.10 1.26 16 20 N -0.81 -22.10 13.65 55.55 0.76 -21.34 16 21 Si 1.14 28.09 25.93 -169.99 -4.41 23.68 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -7.04 6.55 56.52 0.37 -6.67 16 24 H -0.33 -7.89 7.11 56.52 0.40 -7.49 16 25 N -0.60 -15.44 5.06 -10.26 -0.05 -15.49 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.40 1.41 8.25 -40.82 -0.34 1.08 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.37 7.56 -51.93 -0.39 -0.03 16 33 H 0.41 5.07 7.81 -40.82 -0.32 4.75 16 34 H 0.40 6.99 8.84 -40.82 -0.36 6.63 16 35 H 0.14 3.14 5.33 -52.51 -0.28 2.86 16 36 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.28 7.46 8.73 -40.82 -0.36 7.10 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -33.93 325.27 -7.35 -41.28 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.65 Total: 8.30 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.30 Total: 5.06 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.05 Total: -64.89 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.16 Total: -18.33 kcal Atomic # 14 Polarization: 28.09 SS G_CDS: -4.41 Total: 23.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.93 -7.35 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219939391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.242 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds