Wall clock time and date at job start Tue Mar 31 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99813 * 2 1 4 4 O 1.21277 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00157 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47210 * 59.99446 * 5 3 2 7 7 C 1.53002 * 109.47199 * 299.99699 * 5 3 2 8 8 N 1.46504 * 109.47283 * 179.97438 * 5 3 2 9 9 C 1.34778 * 119.99754 * 205.00045 * 8 5 3 10 10 O 1.21575 * 120.00108 * 359.97438 * 9 8 5 11 11 N 1.34780 * 119.99820 * 179.97438 * 9 8 5 12 12 C 1.39240 * 119.99933 * 185.78817 * 11 9 8 13 13 C 1.39684 * 119.57882 * 18.76112 * 12 11 9 14 14 C 1.38646 * 119.49834 * 180.02562 * 13 12 11 15 15 C 1.38357 * 118.66902 * 359.97438 * 14 13 12 16 16 C 1.40574 * 119.13357 * 0.02562 * 15 14 13 17 17 C 1.41326 * 119.78807 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00205 * 8.92754 * 17 16 15 19 19 C 1.40030 * 119.99834 * 188.92094 * 17 16 15 20 20 N 1.30744 * 119.99922 * 196.05781 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 16.06713 * 19 17 16 22 22 H 1.48500 * 109.47234 * 269.99585 * 21 19 17 23 23 H 1.48501 * 109.47298 * 29.99499 * 21 19 17 24 24 H 1.48497 * 109.47441 * 149.99607 * 21 19 17 25 25 N 1.31912 * 119.57331 * 199.03646 * 12 11 9 26 26 H 1.09002 * 109.47138 * 60.00649 * 1 2 3 27 27 H 1.08999 * 109.46659 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47543 * 299.99953 * 1 2 3 29 29 H 0.96994 * 120.00496 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 7 5 3 31 31 H 1.09001 * 109.47149 * 300.00377 * 7 5 3 32 32 H 1.08999 * 109.47197 * 60.00054 * 7 5 3 33 33 H 0.96993 * 119.99827 * 24.99234 * 8 5 3 34 34 H 0.97006 * 119.99774 * 5.78688 * 11 9 8 35 35 H 1.07996 * 120.25248 * 0.02590 * 13 12 11 36 36 H 1.07998 * 120.66274 * 179.97438 * 14 13 12 37 37 H 1.07998 * 120.43474 * 180.02562 * 15 14 13 38 38 H 0.97003 * 120.00130 * 354.94141 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0088 0.6536 -0.8908 7 6 4.1563 0.4459 1.2483 8 7 4.1341 2.5486 -0.0011 9 6 5.3559 2.8312 -0.4949 10 8 6.0529 1.9399 -0.9395 11 7 5.8049 4.1020 -0.4959 12 6 7.0134 4.4129 -1.1137 13 6 7.5570 3.5293 -2.0489 14 6 8.7607 3.8402 -2.6627 15 6 9.3901 5.0258 -2.3271 16 6 8.7922 5.8733 -1.3783 17 6 9.4233 7.0874 -1.0248 18 1 10.2819 7.4320 -1.5821 19 6 8.9355 7.8436 0.0481 20 7 9.2986 9.0920 0.1865 21 14 7.7663 7.0687 1.2817 22 1 6.3660 7.2669 0.8285 23 1 8.0510 5.6152 1.3882 24 1 7.9520 7.7081 2.6090 25 7 7.6329 5.5356 -0.8041 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2463 0.4456 1.2477 31 1 3.7933 0.9595 2.1386 32 1 3.7931 -0.5818 1.2483 33 1 3.5780 3.2597 0.3539 34 1 5.2861 4.8000 -0.0661 35 1 7.0436 2.6108 -2.2922 36 1 9.1982 3.1705 -3.3882 37 1 10.3285 5.2965 -2.7880 38 1 9.9617 9.4732 -0.4101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219939391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:47 Heat of formation + Delta-G solvation = -58.791178 kcal Electronic energy + Delta-G solvation = -22898.999247 eV Core-core repulsion = 19354.327655 eV Total energy + Delta-G solvation = -3544.671592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99514 -40.93138 -39.90202 -36.60936 -35.95834 -35.75624 -35.36530 -32.92475 -32.27437 -30.68822 -27.83110 -27.25404 -25.42893 -23.77929 -23.47277 -21.85781 -21.41071 -20.57047 -19.70765 -19.01464 -17.67905 -17.51274 -16.99917 -16.84374 -16.42024 -16.33972 -15.88571 -15.71631 -15.26857 -14.97705 -14.69955 -14.48497 -14.22634 -14.16489 -13.71406 -13.53166 -13.35449 -13.07434 -12.97102 -12.80246 -12.60859 -12.16218 -11.85114 -11.58645 -11.10962 -11.05109 -10.98812 -10.36701 -10.34569 -10.17769 -9.82356 -9.30037 -9.15304 -6.77216 0.60302 0.80960 1.23820 1.43904 1.52967 1.65353 1.94429 1.99562 2.21461 2.40994 2.66006 2.98080 3.59535 3.61082 3.99679 4.10165 4.10549 4.42432 4.46445 4.60716 4.64914 4.66929 4.73635 4.78565 4.83811 4.97785 5.20852 5.27092 5.32903 5.37277 5.40072 5.46847 5.65654 5.80049 5.94364 6.05284 6.41245 6.44177 6.61951 6.78673 7.10124 7.31739 7.56800 7.94994 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003811 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.842999 B = 7345.454895 C = 8060.598200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.513 3.487 4 O -0.574 6.574 5 C 0.143 3.857 6 H 0.121 0.879 7 C -0.155 4.155 8 N -0.717 5.717 9 C 0.717 3.283 10 O -0.587 6.587 11 N -0.665 5.665 12 C 0.391 3.609 13 C -0.305 4.305 14 C -0.028 4.028 15 C -0.295 4.295 16 C 0.259 3.741 17 C -0.513 4.513 18 H 0.070 0.930 19 C 0.022 3.978 20 N -0.827 5.827 21 Si 1.175 2.825 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.321 1.321 25 N -0.611 5.611 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.422 0.578 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.412 0.588 34 H 0.414 0.586 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 -20.542 2.008 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.298 3.702 4 O -0.453 6.453 5 C 0.034 3.966 6 H 0.138 0.862 7 C -0.213 4.213 8 N -0.375 5.375 9 C 0.417 3.583 10 O -0.466 6.466 11 N -0.312 5.312 12 C 0.158 3.842 13 C -0.330 4.330 14 C -0.052 4.052 15 C -0.318 4.318 16 C 0.134 3.866 17 C -0.546 4.546 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.450 5.450 21 Si 1.006 2.994 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.254 1.254 25 N -0.336 5.336 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.259 0.741 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.546 -19.684 3.452 26.593 hybrid contribution 1.526 0.237 -1.854 2.413 sum -16.019 -19.446 1.598 25.246 Atomic orbital electron populations 1.21729 0.78156 1.04578 1.01596 1.45612 1.08570 1.08241 1.74082 1.20659 0.89677 0.84399 0.75452 1.90716 1.70622 1.32838 1.51119 1.20798 0.90041 0.82514 1.03227 0.86185 1.22155 1.02326 1.01619 0.95225 1.44775 1.15642 1.10765 1.66285 1.15617 0.82181 0.81800 0.78716 1.90804 1.57103 1.45897 1.52749 1.42256 1.21185 1.09621 1.58179 1.18091 0.85480 0.90921 0.89681 1.21875 1.01569 1.04459 1.05058 1.21324 0.93332 0.94681 0.95899 1.21772 1.03765 0.98445 1.07786 1.18364 0.86932 0.92182 0.89121 1.20639 1.14101 1.04828 1.15005 0.91211 1.28383 0.98741 0.93005 0.99416 1.70637 1.23944 1.12219 1.38177 0.81710 0.74469 0.73319 0.69947 1.20312 1.21855 1.25362 1.66103 1.13353 1.21023 1.33128 0.93273 0.86708 0.92815 0.74079 0.92168 0.91680 0.87466 0.75105 0.75002 0.83130 0.83799 0.86730 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.71 -7.00 5.61 -484.53 -2.72 -9.71 16 3 C 0.51 9.30 7.22 87.66 0.63 9.93 16 4 O -0.57 -15.18 15.84 -3.02 -0.05 -15.23 16 5 C 0.14 2.64 2.98 44.24 0.13 2.78 16 6 H 0.12 2.21 7.58 -2.38 -0.02 2.19 16 7 C -0.15 -2.20 9.38 71.98 0.68 -1.52 16 8 N -0.72 -17.89 4.96 -461.41 -2.29 -20.18 16 9 C 0.72 23.79 8.37 179.05 1.50 25.29 16 10 O -0.59 -22.01 12.80 -3.95 -0.05 -22.06 16 11 N -0.66 -24.87 5.42 -322.12 -1.75 -26.61 16 12 C 0.39 17.94 7.51 133.26 1.00 18.94 16 13 C -0.31 -13.43 8.83 22.72 0.20 -13.23 16 14 C -0.03 -1.19 10.15 22.40 0.23 -0.97 16 15 C -0.30 -14.14 9.83 22.87 0.22 -13.92 16 16 C 0.26 13.94 6.27 40.19 0.25 14.19 16 17 C -0.51 -29.07 9.51 23.46 0.22 -28.84 16 18 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 19 C 0.02 1.23 5.51 85.29 0.47 1.70 16 20 N -0.83 -46.41 13.65 21.84 0.30 -46.11 16 21 Si 1.17 57.28 25.93 68.60 1.78 59.06 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -14.54 6.55 99.48 0.65 -13.89 16 24 H -0.32 -15.16 7.11 99.48 0.71 -14.45 16 25 N -0.61 -31.35 5.06 -186.37 -0.94 -32.30 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.42 1.25 8.25 -92.71 -0.76 0.49 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 0.69 7.56 -2.39 -0.02 0.68 16 33 H 0.41 9.70 7.81 -92.71 -0.72 8.97 16 34 H 0.41 13.81 8.84 -92.70 -0.82 12.99 16 35 H 0.15 6.38 5.33 -3.18 -0.02 6.36 16 36 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.28 15.33 8.73 -92.71 -0.81 14.52 16 Total: -1.00 -73.67 325.27 -0.08 -73.75 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -1.27 Total: 22.98 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.90 Total: 16.40 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -7.39 Total: -134.92 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.10 Total: -37.29 kcal Atomic # 14 Polarization: 57.28 SS G_CDS: 1.78 Total: 59.06 kcal Total: -73.67 -0.08 -73.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219939391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.962 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds