Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21271 * 119.99650 * 2 1 4 4 N 1.34776 * 120.00071 * 179.97438 * 2 1 3 5 5 C 1.39033 * 119.99959 * 185.16633 * 4 2 1 6 6 C 1.39543 * 120.48954 * 174.86719 * 5 4 2 7 7 C 1.38170 * 118.45623 * 180.02562 * 6 5 4 8 8 N 1.32487 * 119.25892 * 359.97438 * 7 6 5 9 9 C 1.32295 * 120.93001 * 0.02562 * 8 7 6 10 10 O 1.35459 * 119.15694 * 179.97438 * 9 8 7 11 11 C 1.42893 * 117.00023 * 0.02562 * 10 9 8 12 12 H 1.09004 * 110.88571 * 333.87666 * 11 10 9 13 13 C 1.55161 * 111.00348 * 209.99833 * 11 10 9 14 14 C 1.54321 * 102.94142 * 206.38175 * 13 11 10 15 15 N 1.47024 * 107.27429 * 22.19491 * 14 13 11 16 16 C 1.36937 * 125.65224 * 181.02025 * 15 14 13 17 17 H 1.08003 * 120.00083 * 185.11962 * 16 15 14 18 18 C 1.38807 * 119.99805 * 5.11563 * 16 15 14 19 19 N 1.31621 * 120.00137 * 4.97469 * 18 16 15 20 20 Si 1.86802 * 119.99727 * 185.25131 * 18 16 15 21 21 H 1.48501 * 109.46834 * 264.72320 * 20 18 16 22 22 H 1.48498 * 109.47421 * 24.72764 * 20 18 16 23 23 H 1.48500 * 109.47026 * 144.72510 * 20 18 16 24 24 C 1.47424 * 108.69949 * 1.28523 * 15 14 13 25 25 N 1.32296 * 121.68850 * 0.24965 * 9 8 7 26 26 H 1.09003 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47190 * 299.99618 * 1 2 3 28 28 H 1.09002 * 109.47510 * 59.99915 * 1 2 3 29 29 H 0.97000 * 119.99914 * 5.17450 * 4 2 1 30 30 H 1.07994 * 120.76737 * 359.97438 * 6 5 4 31 31 H 1.08004 * 120.36861 * 180.02562 * 7 6 5 32 32 H 1.09001 * 110.71987 * 88.02177 * 13 11 10 33 33 H 1.08997 * 110.86964 * 324.81952 * 13 11 10 34 34 H 1.09000 * 109.89052 * 262.77658 * 14 13 11 35 35 H 1.09004 * 110.00858 * 141.67885 * 14 13 11 36 36 H 0.97002 * 119.99767 * 180.27801 * 19 18 16 37 37 H 1.08999 * 110.37248 * 94.48224 * 24 15 14 38 38 H 1.08998 * 110.36545 * 216.80664 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5670 -1.1696 0.1089 6 6 4.2666 -2.3720 0.2179 7 6 5.6434 -2.3254 0.3240 8 7 6.2539 -1.1495 0.3185 9 6 5.5638 -0.0256 0.2138 10 8 6.2246 1.1568 0.2126 11 6 7.6481 1.1046 0.3262 12 1 7.9638 0.1975 0.8416 13 6 8.1958 2.3689 1.0396 14 6 9.6313 2.4841 0.4850 15 7 9.6665 1.7539 -0.7906 16 6 10.7661 1.5997 -1.5920 17 1 10.6707 1.1149 -2.5524 18 6 12.0033 2.0666 -1.1701 19 7 12.1399 2.5687 0.0389 20 14 13.4727 1.9894 -2.3209 21 1 14.2494 0.7531 -2.0495 22 1 12.9992 1.9777 -3.7283 23 1 14.3377 3.1760 -2.0995 24 6 8.3202 1.2207 -1.0672 25 7 4.2445 -0.0267 0.1157 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.6989 -2.0055 -0.0749 30 1 3.7439 -3.3170 0.2202 31 1 6.2157 -3.2373 0.4095 32 1 8.2102 2.2263 2.1201 33 1 7.6087 3.2486 0.7759 34 1 10.3367 2.0387 1.1865 35 1 9.8844 3.5314 0.3197 36 1 13.0036 2.8987 0.3323 37 1 7.7630 1.9083 -1.7035 38 1 8.3899 0.2397 -1.5371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228444642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = 32.817659 kcal Electronic energy + Delta-G solvation = -22863.522775 eV Core-core repulsion = 19322.823640 eV Total energy + Delta-G solvation = -3540.699135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39894 -39.85537 -38.46074 -36.30320 -35.37074 -33.18172 -32.23150 -31.14700 -29.68078 -29.19353 -27.29415 -24.70205 -24.59550 -23.52272 -21.33125 -20.38287 -20.06026 -19.05043 -17.79122 -16.93876 -16.90670 -16.38296 -16.08390 -15.59405 -15.34857 -14.69001 -14.44203 -14.16767 -14.10155 -13.63832 -13.39701 -13.04507 -12.87368 -12.58183 -12.28554 -11.94106 -11.66782 -11.50769 -11.05081 -10.90333 -10.78655 -10.39525 -10.35822 -10.26767 -10.06596 -9.83516 -9.71230 -9.50555 -8.89533 -8.66239 -8.58919 -6.81759 -5.67897 -3.04029 0.94773 1.12848 2.27237 2.41717 2.96792 3.42924 3.48018 3.50624 3.87649 4.11340 4.33343 4.49746 4.55043 4.69052 4.89747 4.98300 4.99377 5.25223 5.34888 5.43976 5.47999 5.58662 5.70268 5.79417 5.85638 6.12127 6.34842 6.47155 6.51989 6.52543 6.68008 6.76920 7.15277 7.48936 7.52514 7.65426 7.81131 7.83669 8.26049 8.30814 9.22758 9.82867 10.48227 11.42374 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.003176 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.048412 B = 8814.811741 C = 9141.680596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.494 3.506 3 O -0.462 6.462 4 N -0.657 5.657 5 C 0.435 3.565 6 C -0.313 4.313 7 C 0.209 3.791 8 N -0.581 5.581 9 C 0.538 3.462 10 O -0.274 6.274 11 C 0.074 3.926 12 H 0.104 0.896 13 C -0.139 4.139 14 C 0.176 3.824 15 N -0.600 5.600 16 C -0.226 4.226 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.127 3.873 25 N -0.526 5.526 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.421 0.579 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.253 0.747 37 H 0.027 0.973 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.177 -12.528 2.587 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.280 3.720 3 O -0.328 6.328 4 N -0.306 5.306 5 C 0.194 3.806 6 C -0.340 4.340 7 C 0.045 3.955 8 N -0.313 5.313 9 C 0.236 3.764 10 O -0.173 6.173 11 C 0.017 3.983 12 H 0.121 0.879 13 C -0.177 4.177 14 C 0.051 3.949 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.000 4.000 25 N -0.259 5.259 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.259 0.741 30 H 0.165 0.835 31 H 0.191 0.809 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.146 -10.383 2.592 24.596 hybrid contribution 0.143 -1.429 -0.600 1.556 sum -22.003 -11.811 1.992 25.052 Atomic orbital electron populations 1.21870 0.90376 1.04476 1.05909 1.21249 0.90848 0.83385 0.76533 1.90936 1.69733 1.30188 1.41980 1.43805 1.03518 1.11247 1.72080 1.18279 0.84929 0.88710 0.88723 1.21994 0.96804 0.98127 1.17099 1.22749 0.90889 0.95250 0.86642 1.68188 1.41193 0.98831 1.23081 1.20561 0.84873 0.85328 0.85648 1.86165 1.23547 1.23046 1.84548 1.24089 0.73339 1.01102 0.99792 0.87850 1.23099 0.99418 0.95911 0.99295 1.21251 0.89033 0.96816 0.87760 1.44320 1.04219 1.61306 1.22946 1.19065 0.85185 1.33395 0.97818 0.90348 1.24825 0.97443 1.01348 0.96837 1.69942 1.23384 1.46759 1.16806 0.86065 0.82488 0.77143 0.79863 1.21605 1.20630 1.21628 1.21844 0.87656 0.97439 0.93033 1.67384 1.06715 1.28604 1.23174 0.90362 0.88217 0.88232 0.74137 0.83515 0.80917 0.91333 0.91183 0.91648 0.94324 0.93698 0.95495 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.39 36.01 0.37 -0.39 16 2 C 0.49 5.08 7.90 -10.99 -0.09 4.99 16 3 O -0.46 -7.65 15.41 5.57 0.09 -7.57 16 4 N -0.66 -5.57 5.38 -11.29 -0.06 -5.63 16 5 C 0.43 5.49 7.45 -154.45 -1.15 4.34 16 6 C -0.31 -3.00 10.03 -39.12 -0.39 -3.39 16 7 C 0.21 2.41 11.29 -17.29 -0.20 2.21 16 8 N -0.58 -9.56 8.63 -14.81 -0.13 -9.69 16 9 C 0.54 10.06 8.49 -91.29 -0.77 9.28 16 10 O -0.27 -5.69 10.00 -18.07 -0.18 -5.87 16 11 C 0.07 1.55 3.35 -24.46 -0.08 1.47 16 12 H 0.10 2.15 6.91 -51.93 -0.36 1.80 16 13 C -0.14 -2.90 6.68 -24.90 -0.17 -3.07 16 14 C 0.18 4.47 5.42 -3.06 -0.02 4.46 16 15 N -0.60 -16.24 3.39 -169.93 -0.58 -16.81 16 16 C -0.23 -6.54 10.27 -15.06 -0.15 -6.70 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.24 5.47 -17.43 -0.10 -0.34 16 19 N -0.92 -27.51 10.39 55.49 0.58 -26.94 16 20 Si 0.91 22.53 29.56 -169.99 -5.02 17.50 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.13 2.97 6.98 -2.41 -0.02 2.95 16 25 N -0.53 -9.32 8.07 -13.88 -0.11 -9.43 16 26 H 0.08 0.10 7.92 -51.93 -0.41 -0.31 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.42 1.39 8.56 -40.82 -0.35 1.04 16 30 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.80 6.97 -51.93 -0.36 1.44 16 35 H 0.04 1.06 7.88 -51.93 -0.41 0.65 16 36 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -38.17 325.24 -8.10 -46.26 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.82 Total: -2.57 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -2.76 Total: 15.84 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.30 Total: -68.50 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.10 Total: -13.43 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.17 -8.10 -46.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228444642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.079 kcal (2) G-P(sol) polarization free energy of solvation -38.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds