Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86792 * 120.00086 * 2 1 4 4 H 1.48496 * 109.47248 * 266.15488 * 3 2 1 5 5 H 1.48504 * 109.47530 * 146.15440 * 3 2 1 6 6 H 1.48511 * 109.47171 * 26.15556 * 3 2 1 7 7 C 1.39950 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 14.13419 * 7 2 1 9 9 C 1.41393 * 119.99825 * 194.13178 * 7 2 1 10 10 C 1.40731 * 120.23968 * 237.34533 * 9 7 2 11 11 C 1.37597 * 119.74306 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24829 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50281 * 359.97221 * 12 11 10 14 14 C 1.37643 * 120.24600 * 359.76875 * 13 12 11 15 15 C 1.50699 * 120.12946 * 180.25849 * 14 13 12 16 16 N 1.46899 * 109.46571 * 268.28014 * 15 14 13 17 17 C 1.47901 * 111.00562 * 64.58061 * 16 15 14 18 18 C 1.53992 * 107.06164 * 214.15472 * 17 16 15 19 19 H 1.09003 * 110.31046 * 120.13447 * 18 17 16 20 20 F 1.39894 * 110.31169 * 242.30340 * 18 17 16 21 21 C 1.54598 * 105.13931 * 1.22328 * 18 17 16 22 22 C 1.48534 * 111.00269 * 307.17981 * 16 15 14 23 23 H 1.09001 * 110.66651 * 41.28647 * 22 16 15 24 24 C 1.50702 * 110.66757 * 278.16033 * 22 16 15 25 25 N 1.34776 * 119.99868 * 179.97438 * 24 22 16 26 26 O 1.21274 * 119.99900 * 359.97438 * 24 22 16 27 27 H 0.97001 * 120.00075 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.13525 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.87846 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.74694 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.87910 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47197 * 28.27387 * 15 14 13 33 33 H 1.08998 * 109.47272 * 148.27883 * 15 14 13 34 34 H 1.09004 * 109.91237 * 333.50596 * 17 16 15 35 35 H 1.08999 * 109.92178 * 94.59982 * 17 16 15 36 36 H 1.09002 * 110.72691 * 140.31508 * 21 18 17 37 37 H 1.09000 * 110.72275 * 263.60247 * 21 18 17 38 38 H 0.97001 * 119.99960 * 0.02562 * 25 24 22 39 39 H 0.96996 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5710 1.9994 -1.3969 5 1 3.4968 1.4650 0.7798 6 1 1.4013 2.6748 0.6172 7 6 2.0080 -1.2120 0.0005 8 1 1.4925 -2.1332 -0.2274 9 6 3.3898 -1.2304 0.2995 10 6 4.3075 -1.7661 -0.6231 11 6 5.6500 -1.7793 -0.3214 12 6 6.0995 -1.2678 0.8865 13 6 5.2046 -0.7376 1.8026 14 6 3.8579 -0.7092 1.5197 15 6 2.8879 -0.1269 2.5153 16 7 2.3924 -1.1924 3.3968 17 6 3.4880 -1.7557 4.2153 18 6 3.1890 -3.2550 4.4001 19 1 3.9998 -3.8560 3.9883 20 9 3.0044 -3.5499 5.7551 21 6 1.8821 -3.5061 3.6133 22 6 1.8518 -2.3283 2.6070 23 1 2.4904 -2.5388 1.7491 24 6 0.4399 -2.0437 2.1637 25 7 -0.2328 -2.9533 1.4313 26 8 -0.0910 -0.9960 2.4661 27 1 -0.4850 0.8400 -0.0004 28 1 3.9596 -2.1662 -1.5639 29 1 6.3562 -2.1903 -1.0277 30 1 7.1551 -1.2819 1.1148 31 1 5.5658 -0.3415 2.7402 32 1 3.3922 0.6331 3.1120 33 1 2.0499 0.3247 1.9845 34 1 4.4400 -1.6277 3.7000 35 1 3.5209 -1.2584 5.1846 36 1 1.9250 -4.4606 3.0888 37 1 1.0187 -3.4681 4.2775 38 1 0.1917 -3.7914 1.1898 39 1 -1.1417 -2.7703 1.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = -38.322037 kcal Electronic energy + Delta-G solvation = -25452.160280 eV Core-core repulsion = 21888.456336 eV Total energy + Delta-G solvation = -3563.703945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.37328 -39.81103 -37.77923 -36.44056 -33.56353 -32.71712 -31.83753 -30.51573 -29.17592 -28.39568 -25.59815 -24.54039 -22.30368 -21.11974 -20.65489 -19.95390 -18.90062 -17.69113 -16.69598 -16.55345 -15.54150 -15.42618 -15.01003 -14.79676 -14.56863 -14.40455 -13.86772 -13.68962 -13.49729 -13.08376 -12.88244 -12.68958 -12.25167 -12.13637 -11.80589 -11.66581 -11.40820 -10.97271 -10.84867 -10.78522 -10.67141 -10.57411 -10.25425 -10.18082 -10.00400 -9.58230 -8.90447 -8.65314 -8.38500 -7.85690 -7.65417 -7.37757 -6.60369 -4.40422 2.38158 2.45397 3.18391 3.25613 3.35102 3.95289 4.12540 4.28577 4.58291 4.64956 4.80475 4.86680 5.06032 5.15302 5.31913 5.67139 5.74333 5.76641 5.81792 5.90736 5.99510 6.03016 6.09080 6.14480 6.35344 6.41681 6.57699 6.60909 6.77197 6.82468 7.15566 7.26995 7.42295 7.44094 7.53369 7.66382 7.85389 7.92720 7.99267 8.40888 8.48923 8.64318 8.98018 9.59239 10.39476 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.010228 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.135051 B = 2737.012164 C = 3779.646112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.104 3.896 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.235 1.235 6 H -0.281 1.281 7 C -0.516 4.516 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.183 4.183 11 C -0.105 4.105 12 C -0.209 4.209 13 C -0.096 4.096 14 C -0.189 4.189 15 C 0.095 3.905 16 N -0.477 5.477 17 C -0.001 4.001 18 C 0.084 3.916 19 H 0.089 0.911 20 F -0.212 7.212 21 C -0.145 4.145 22 C 0.049 3.951 23 H 0.112 0.888 24 C 0.565 3.435 25 N -0.856 5.856 26 O -0.513 6.513 27 H 0.279 0.721 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.384 0.616 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 -6.288 3.379 8.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.115 4.115 3 Si 0.687 3.313 4 H -0.206 1.206 5 H -0.158 1.158 6 H -0.206 1.206 7 C -0.546 4.546 8 H 0.113 0.887 9 C 0.096 3.904 10 C -0.202 4.202 11 C -0.123 4.123 12 C -0.228 4.228 13 C -0.114 4.114 14 C -0.192 4.192 15 C -0.032 4.032 16 N -0.200 5.200 17 C -0.129 4.129 18 C 0.048 3.952 19 H 0.107 0.893 20 F -0.193 7.193 21 C -0.184 4.184 22 C -0.063 4.063 23 H 0.130 0.870 24 C 0.349 3.651 25 N -0.419 5.419 26 O -0.386 6.386 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.210 0.790 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.682 -5.156 4.079 7.535 hybrid contribution 1.030 0.210 -0.982 1.439 sum 4.712 -4.946 3.098 7.501 Atomic orbital electron populations 1.69560 1.07041 1.29225 1.35345 1.25490 0.94397 0.99567 0.92062 0.87116 0.82508 0.82392 0.79253 1.20554 1.15812 1.20635 1.18965 0.91201 0.95751 1.48713 0.88749 1.17736 0.94178 0.89519 0.88955 1.21576 0.92303 1.07311 0.99008 1.20808 0.95709 0.99607 0.96201 1.20602 0.97673 1.08033 0.96489 1.20674 0.93252 0.99655 0.97856 1.20838 0.93773 1.07968 0.96578 1.21353 0.97308 0.92833 0.91686 1.64900 1.26405 1.08150 1.20509 1.23628 0.96319 0.92838 1.00165 1.22386 0.98813 0.97240 0.76809 0.89284 1.92791 1.96690 1.94660 1.35193 1.23164 0.97797 0.98800 0.98618 1.22960 0.96672 0.89741 0.96915 0.87029 1.19247 0.86019 0.83084 0.76799 1.43531 1.18756 1.21082 1.58488 1.90624 1.68934 1.23880 1.55151 0.91086 0.87754 0.88652 0.88659 0.88611 0.92289 0.88079 0.91128 0.89688 0.90012 0.89671 0.79001 0.77480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 11.87 55.55 0.66 -19.56 16 2 C 0.10 2.58 3.43 -17.34 -0.06 2.52 16 3 Si 0.86 20.30 25.09 -169.99 -4.27 16.04 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.24 -5.46 5.09 56.52 0.29 -5.17 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -12.21 5.26 -37.74 -0.20 -12.41 16 8 H 0.09 2.30 7.09 -52.49 -0.37 1.93 16 9 C 0.10 2.19 2.94 -106.83 -0.31 1.88 16 10 C -0.18 -3.80 9.80 -38.87 -0.38 -4.18 16 11 C -0.10 -1.97 10.02 -39.66 -0.40 -2.36 16 12 C -0.21 -3.85 10.05 -39.29 -0.39 -4.25 16 13 C -0.10 -1.84 7.92 -39.66 -0.31 -2.15 16 14 C -0.19 -3.99 2.28 -103.91 -0.24 -4.23 16 15 C 0.10 2.06 3.91 -4.98 -0.02 2.04 16 16 N -0.48 -9.58 4.82 -225.42 -1.09 -10.67 16 17 C 0.00 -0.02 6.32 -2.76 -0.02 -0.03 16 18 C 0.08 1.27 4.78 -25.37 -0.12 1.15 16 19 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 20 F -0.21 -3.39 17.09 2.25 0.04 -3.35 16 21 C -0.15 -2.25 6.28 -24.87 -0.16 -2.40 16 22 C 0.05 0.93 1.94 -66.94 -0.13 0.80 16 23 H 0.11 2.27 4.29 -51.93 -0.22 2.05 16 24 C 0.56 11.80 4.20 -10.99 -0.05 11.75 16 25 N -0.86 -14.73 8.21 31.22 0.26 -14.48 16 26 O -0.51 -12.94 14.68 5.56 0.08 -12.86 16 27 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.10 1.66 7.43 -52.49 -0.39 1.27 16 32 H 0.06 1.20 8.07 -51.93 -0.42 0.79 16 33 H 0.10 2.47 2.79 -51.93 -0.14 2.33 16 34 H 0.07 1.17 4.72 -51.93 -0.25 0.92 16 35 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 38 H 0.38 5.40 8.83 -40.82 -0.36 5.04 16 39 H 0.40 6.77 8.93 -40.82 -0.36 6.40 16 LS Contribution 297.15 15.07 4.48 4.48 Total: -1.00 -28.04 297.15 -7.34 -35.38 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.79 Total: -11.88 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.17 Total: -44.70 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.27 Total: 16.04 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.04 -7.34 -35.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.940 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds