Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86792 * 120.00086 * 2 1 4 4 H 1.48496 * 109.47248 * 266.15488 * 3 2 1 5 5 H 1.48504 * 109.47530 * 146.15440 * 3 2 1 6 6 H 1.48511 * 109.47171 * 26.15556 * 3 2 1 7 7 C 1.39950 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 14.13419 * 7 2 1 9 9 C 1.41393 * 119.99825 * 194.13178 * 7 2 1 10 10 C 1.40731 * 120.23968 * 237.34533 * 9 7 2 11 11 C 1.37597 * 119.74306 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24829 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50281 * 359.97221 * 12 11 10 14 14 C 1.37643 * 120.24600 * 359.76875 * 13 12 11 15 15 C 1.50699 * 120.12946 * 180.25849 * 14 13 12 16 16 N 1.46899 * 109.46571 * 268.28014 * 15 14 13 17 17 C 1.47901 * 111.00562 * 64.58061 * 16 15 14 18 18 C 1.53992 * 107.06164 * 214.15472 * 17 16 15 19 19 H 1.09003 * 110.31046 * 120.13447 * 18 17 16 20 20 F 1.39894 * 110.31169 * 242.30340 * 18 17 16 21 21 C 1.54598 * 105.13931 * 1.22328 * 18 17 16 22 22 C 1.48534 * 111.00269 * 307.17981 * 16 15 14 23 23 H 1.09001 * 110.66651 * 41.28647 * 22 16 15 24 24 C 1.50702 * 110.66757 * 278.16033 * 22 16 15 25 25 N 1.34776 * 119.99868 * 179.97438 * 24 22 16 26 26 O 1.21274 * 119.99900 * 359.97438 * 24 22 16 27 27 H 0.97001 * 120.00075 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.13525 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.87846 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.74694 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.87910 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47197 * 28.27387 * 15 14 13 33 33 H 1.08998 * 109.47272 * 148.27883 * 15 14 13 34 34 H 1.09004 * 109.91237 * 333.50596 * 17 16 15 35 35 H 1.08999 * 109.92178 * 94.59982 * 17 16 15 36 36 H 1.09002 * 110.72691 * 140.31508 * 21 18 17 37 37 H 1.09000 * 110.72275 * 263.60247 * 21 18 17 38 38 H 0.97001 * 119.99960 * 0.02562 * 25 24 22 39 39 H 0.96996 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5710 1.9994 -1.3969 5 1 3.4968 1.4650 0.7798 6 1 1.4013 2.6748 0.6172 7 6 2.0080 -1.2120 0.0005 8 1 1.4925 -2.1332 -0.2274 9 6 3.3898 -1.2304 0.2995 10 6 4.3075 -1.7661 -0.6231 11 6 5.6500 -1.7793 -0.3214 12 6 6.0995 -1.2678 0.8865 13 6 5.2046 -0.7376 1.8026 14 6 3.8579 -0.7092 1.5197 15 6 2.8879 -0.1269 2.5153 16 7 2.3924 -1.1924 3.3968 17 6 3.4880 -1.7557 4.2153 18 6 3.1890 -3.2550 4.4001 19 1 3.9998 -3.8560 3.9883 20 9 3.0044 -3.5499 5.7551 21 6 1.8821 -3.5061 3.6133 22 6 1.8518 -2.3283 2.6070 23 1 2.4904 -2.5388 1.7491 24 6 0.4399 -2.0437 2.1637 25 7 -0.2328 -2.9533 1.4313 26 8 -0.0910 -0.9960 2.4661 27 1 -0.4850 0.8400 -0.0004 28 1 3.9596 -2.1662 -1.5639 29 1 6.3562 -2.1903 -1.0277 30 1 7.1551 -1.2819 1.1148 31 1 5.5658 -0.3415 2.7402 32 1 3.3922 0.6331 3.1120 33 1 2.0499 0.3247 1.9845 34 1 4.4400 -1.6277 3.7000 35 1 3.5209 -1.2584 5.1846 36 1 1.9250 -4.4606 3.0888 37 1 1.0187 -3.4681 4.2775 38 1 0.1917 -3.7914 1.1898 39 1 -1.1417 -2.7703 1.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = -59.211498 kcal Electronic energy + Delta-G solvation = -25453.066115 eV Core-core repulsion = 21888.456336 eV Total energy + Delta-G solvation = -3564.609780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.58865 -41.34562 -39.37423 -37.95226 -35.27943 -34.28319 -33.35863 -32.15742 -30.64370 -29.77442 -27.20100 -26.13690 -23.77009 -22.63906 -22.05056 -21.49572 -20.45166 -19.38218 -18.11008 -17.96399 -17.08502 -16.95950 -16.42665 -16.35527 -16.03085 -15.85340 -15.34076 -15.29230 -14.97851 -14.69887 -14.45117 -14.34268 -13.81665 -13.66459 -13.30913 -13.16776 -13.04161 -12.49794 -12.42598 -12.25811 -12.19383 -11.94982 -11.84748 -11.73516 -11.63220 -11.24134 -10.71185 -10.29022 -9.94628 -9.40193 -9.15289 -9.00633 -8.44104 -6.21745 0.80802 0.86714 1.29979 1.35304 1.44542 2.25501 2.39456 2.83416 2.91635 3.32315 3.40053 3.56333 3.61372 3.77312 4.03820 4.23587 4.28564 4.39798 4.45846 4.49677 4.54209 4.71590 4.75823 4.81205 4.88048 5.02214 5.05679 5.16868 5.19734 5.25569 5.55631 5.65023 5.83070 5.91365 5.98578 6.13760 6.22844 6.38678 6.45749 6.63834 6.92627 7.06175 7.18070 8.06325 8.56305 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.010228 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.135051 B = 2737.012164 C = 3779.646112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.286 1.286 5 H -0.228 1.228 6 H -0.296 1.296 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.078 3.922 10 C -0.191 4.191 11 C -0.105 4.105 12 C -0.191 4.191 13 C -0.103 4.103 14 C -0.187 4.187 15 C 0.094 3.906 16 N -0.497 5.497 17 C -0.002 4.002 18 C 0.090 3.910 19 H 0.120 0.880 20 F -0.216 7.216 21 C -0.139 4.139 22 C 0.052 3.948 23 H 0.103 0.897 24 C 0.559 3.441 25 N -0.842 5.842 26 O -0.564 6.564 27 H 0.268 0.732 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.401 0.599 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 -8.076 3.874 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.151 1.151 6 H -0.223 1.223 7 C -0.545 4.545 8 H 0.097 0.903 9 C 0.076 3.924 10 C -0.210 4.210 11 C -0.123 4.123 12 C -0.209 4.209 13 C -0.122 4.122 14 C -0.190 4.190 15 C -0.033 4.033 16 N -0.220 5.220 17 C -0.130 4.130 18 C 0.054 3.946 19 H 0.138 0.862 20 F -0.197 7.197 21 C -0.178 4.178 22 C -0.059 4.059 23 H 0.120 0.880 24 C 0.344 3.656 25 N -0.405 5.405 26 O -0.441 6.441 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.016 -6.993 4.563 10.907 hybrid contribution 0.197 0.689 -1.105 1.317 sum 7.214 -6.304 3.458 10.185 Atomic orbital electron populations 1.69630 1.07604 1.28390 1.39076 1.25786 0.94520 1.00742 0.92359 0.86725 0.82041 0.81278 0.78364 1.21324 1.15093 1.22263 1.18835 0.92062 0.94650 1.48947 0.90305 1.17785 0.93758 0.91001 0.89875 1.21723 0.93347 1.06928 0.98956 1.21157 0.95233 0.98889 0.97040 1.21068 0.99290 1.05133 0.95433 1.20957 0.92429 0.99599 0.99182 1.20836 0.94625 1.07430 0.96096 1.21214 0.96394 0.93640 0.92051 1.64824 1.27890 1.08633 1.20620 1.23694 0.95522 0.94125 0.99693 1.22440 0.99276 0.96378 0.76524 0.86228 1.92790 1.96757 1.94571 1.35619 1.23182 0.97928 0.98785 0.97860 1.22840 0.94892 0.90765 0.97406 0.87975 1.19717 0.86837 0.82622 0.76430 1.43387 1.18625 1.21232 1.57207 1.90597 1.70219 1.26007 1.57255 0.92220 0.87631 0.85414 0.85188 0.86392 0.91880 0.91206 0.90375 0.89425 0.86657 0.90578 0.77084 0.77534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.18 11.87 21.83 0.26 -43.92 16 2 C 0.08 4.11 3.43 85.26 0.29 4.40 16 3 Si 0.89 42.66 25.09 68.60 1.72 44.38 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.23 -10.49 5.09 99.48 0.51 -9.98 16 6 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.51 -24.52 5.26 23.46 0.12 -24.40 16 8 H 0.08 3.92 7.09 -2.91 -0.02 3.90 16 9 C 0.08 3.37 2.94 -21.29 -0.06 3.30 16 10 C -0.19 -7.42 9.80 22.73 0.22 -7.19 16 11 C -0.10 -3.45 10.02 22.22 0.22 -3.22 16 12 C -0.19 -5.99 10.05 22.46 0.23 -5.77 16 13 C -0.10 -3.55 7.92 22.22 0.18 -3.38 16 14 C -0.19 -7.54 2.28 -19.40 -0.04 -7.58 16 15 C 0.09 4.04 3.91 85.56 0.33 4.38 16 16 N -0.50 -19.57 4.82 -867.10 -4.18 -23.75 16 17 C 0.00 -0.07 6.32 86.45 0.55 0.48 16 18 C 0.09 2.43 4.78 31.47 0.15 2.58 16 19 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 20 F -0.22 -6.26 17.09 44.97 0.77 -5.50 16 21 C -0.14 -3.97 6.28 31.80 0.20 -3.77 16 22 C 0.05 1.95 1.94 44.52 0.09 2.04 16 23 H 0.10 4.03 4.29 -2.39 -0.01 4.02 16 24 C 0.56 23.72 4.20 87.66 0.37 24.09 16 25 N -0.84 -29.31 8.21 -173.54 -1.42 -30.73 16 26 O -0.56 -29.58 14.68 -3.01 -0.04 -29.62 16 27 H 0.27 14.46 8.30 -92.71 -0.77 13.69 16 28 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.12 3.55 7.43 -2.91 -0.02 3.52 16 32 H 0.06 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.07 3.49 2.79 -2.39 -0.01 3.48 16 34 H 0.08 2.31 4.72 -2.38 -0.01 2.30 16 35 H 0.09 2.66 8.03 -2.39 -0.02 2.64 16 36 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.08 2.33 8.03 -2.39 -0.02 2.31 16 38 H 0.40 11.03 8.83 -92.71 -0.82 10.21 16 39 H 0.40 13.92 8.93 -92.71 -0.83 13.09 16 Total: -1.00 -62.13 297.15 -0.79 -62.91 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.73 Total: 40.28 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 2.84 Total: -14.05 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -5.34 Total: -98.40 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.04 Total: -29.62 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.77 Total: -5.50 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.72 Total: 44.38 kcal Total: -62.13 -0.79 -62.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.702 kcal (2) G-P(sol) polarization free energy of solvation -62.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds