Wall clock time and date at job start Tue Mar 31 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31075 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48505 * 109.47202 * 270.00065 * 3 2 1 5 5 H 1.48497 * 109.46973 * 29.99765 * 3 2 1 6 6 H 1.48503 * 109.47313 * 150.00204 * 3 2 1 7 7 C 1.39689 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.40962 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.38999 * 126.92921 * 338.11633 * 9 7 2 11 11 N 1.35591 * 109.23812 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.69929 * 180.02562 * 11 10 9 13 13 C 1.38176 * 110.59539 * 0.02562 * 11 10 9 14 14 C 1.39163 * 132.73539 * 179.97438 * 13 11 10 15 15 C 1.38000 * 120.23886 * 180.02562 * 14 13 11 16 16 C 1.38374 * 120.76728 * 359.70193 * 15 14 13 17 17 C 1.39116 * 120.10738 * 0.57423 * 16 15 14 18 18 C 1.48203 * 120.28477 * 179.73200 * 17 16 15 19 19 C 1.39437 * 120.12218 * 303.38670 * 18 17 16 20 20 C 1.38001 * 119.86134 * 180.02562 * 19 18 17 21 21 C 1.38331 * 120.13315 * 0.02562 * 20 19 18 22 22 C 1.50696 * 119.87104 * 179.97438 * 21 20 19 23 23 N 1.46892 * 109.47500 * 89.99910 * 22 21 20 24 24 C 1.38346 * 120.26548 * 0.25368 * 21 20 19 25 25 C 1.38001 * 120.12502 * 359.48841 * 24 21 20 26 26 C 1.40222 * 107.88909 * 359.97438 * 13 11 10 27 27 H 0.96999 * 120.00265 * 359.97438 * 1 2 3 28 28 H 1.08000 * 125.37933 * 0.02633 * 10 9 7 29 29 H 1.07993 * 119.88575 * 0.02562 * 14 13 11 30 30 H 1.07996 * 119.61828 * 180.02562 * 15 14 13 31 31 H 1.08003 * 119.94458 * 180.30524 * 16 15 14 32 32 H 1.07995 * 120.06956 * 0.02562 * 19 18 17 33 33 H 1.08000 * 119.92993 * 180.02562 * 20 19 18 34 34 H 1.08999 * 109.46892 * 329.99364 * 22 21 20 35 35 H 1.09004 * 109.47304 * 210.00330 * 22 21 20 36 36 H 1.00900 * 111.00051 * 56.04502 * 23 22 21 37 37 H 1.00901 * 111.00837 * 180.02562 * 23 22 21 38 38 H 1.07991 * 119.93791 * 179.71975 * 24 21 20 39 39 H 1.07996 * 120.06773 * 180.24874 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4922 2.0465 -1.4001 5 1 1.4421 2.6527 0.7000 6 1 3.5423 1.4403 0.7000 7 6 2.0093 -1.2097 -0.0005 8 1 3.0893 -1.2097 -0.0010 9 6 1.3045 -2.4305 -0.0016 10 6 -0.0062 -2.6385 0.4119 11 7 -0.3207 -3.9484 0.2578 12 1 -1.1808 -4.3394 0.4776 13 6 0.7538 -4.6491 -0.2557 14 6 0.9364 -5.9882 -0.5875 15 6 2.1455 -6.4203 -1.0933 16 6 3.1904 -5.5335 -1.2843 17 6 3.0352 -4.1908 -0.9551 18 6 4.1536 -3.2387 -1.1525 19 6 5.3873 -3.4729 -0.5462 20 6 6.4249 -2.5825 -0.7333 21 6 6.2428 -1.4593 -1.5199 22 6 7.3798 -0.4906 -1.7197 23 7 8.1611 -0.8889 -2.8981 24 6 5.0194 -1.2186 -2.1193 25 6 3.9760 -2.1046 -1.9439 26 6 1.8092 -3.7446 -0.4407 27 1 -0.4850 0.8400 0.0004 28 1 -0.6692 -1.8771 0.7952 29 1 0.1290 -6.6919 -0.4488 30 1 2.2761 -7.4617 -1.3479 31 1 4.1294 -5.8851 -1.6857 32 1 5.5304 -4.3493 0.0684 33 1 7.3810 -2.7631 -0.2646 34 1 8.0217 -0.4973 -0.8388 35 1 6.9804 0.5123 -1.8705 36 1 7.5742 -0.9529 -3.7164 37 1 8.9304 -0.2547 -3.0533 38 1 4.8818 -0.3377 -2.7286 39 1 3.0225 -1.9179 -2.4155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241915034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:00 Heat of formation + Delta-G solvation = 69.189336 kcal Electronic energy + Delta-G solvation = -22535.308428 eV Core-core repulsion = 19407.035751 eV Total energy + Delta-G solvation = -3128.272677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87446 -38.65108 -35.91488 -34.60620 -33.39531 -31.55316 -30.39263 -29.42173 -28.17462 -27.63149 -25.02093 -24.17782 -22.11912 -21.74992 -20.42994 -20.20394 -19.38075 -17.20588 -16.24208 -15.83120 -15.44824 -14.95967 -14.93886 -14.47617 -14.34422 -14.08170 -13.92931 -13.21447 -13.04206 -12.82939 -12.62493 -12.50736 -12.14355 -11.86471 -11.42692 -11.27313 -11.12988 -10.92531 -10.80453 -10.65696 -10.34538 -10.24355 -9.82948 -9.68275 -9.21015 -8.74588 -8.49327 -8.20325 -7.81967 -7.08295 -6.46917 -6.44912 -3.96835 1.63526 2.08504 2.31426 2.62156 3.08793 3.17728 3.23944 4.10016 4.22160 4.30123 4.50972 4.77674 4.85053 5.11802 5.27280 5.43285 5.52875 5.60859 5.68048 5.72199 5.77611 5.95571 6.05519 6.10307 6.27612 6.44731 6.51302 6.62955 6.68560 6.80050 6.98134 7.04814 7.15386 7.16326 7.18786 7.26643 7.37238 7.43045 7.51305 7.59966 7.70709 7.75665 8.05049 8.34415 8.68621 9.01184 9.15255 9.20846 10.55819 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.007716 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.494271 B = 3628.027284 C = 5832.403409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.420 4.420 8 H 0.079 0.921 9 C 0.025 3.975 10 C -0.076 4.076 11 N -0.592 5.592 12 H 0.394 0.606 13 C 0.084 3.916 14 C -0.149 4.149 15 C -0.117 4.117 16 C -0.171 4.171 17 C 0.002 3.998 18 C -0.020 4.020 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.098 4.098 22 C 0.104 3.896 23 N -0.846 5.846 24 C -0.123 4.123 25 C -0.063 4.063 26 C -0.111 4.111 27 H 0.270 0.730 28 H 0.175 0.825 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.342 0.658 37 H 0.337 0.663 38 H 0.111 0.889 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -3.022 -2.929 8.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.148 4.148 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.097 0.903 9 C 0.020 3.980 10 C -0.200 4.200 11 N -0.193 5.193 12 H 0.227 0.773 13 C -0.027 4.027 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.191 4.191 17 C 0.001 3.999 18 C -0.021 4.021 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.098 4.098 22 C -0.026 4.026 23 N -0.375 5.375 24 C -0.142 4.142 25 C -0.081 4.081 26 C -0.118 4.118 27 H 0.081 0.919 28 H 0.192 0.808 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.229 -3.422 -2.453 8.366 hybrid contribution -0.558 1.630 -0.256 1.742 sum 6.671 -1.792 -2.709 7.420 Atomic orbital electron populations 1.69691 1.06961 1.27765 1.42461 1.25573 0.94728 1.00222 0.94316 0.86398 0.80391 0.81695 0.78824 1.19975 1.20784 1.18844 1.18817 0.94192 0.88648 1.43682 0.90344 1.17992 0.91835 0.89791 0.98400 1.22697 1.00424 0.82507 1.14369 1.41447 1.11610 1.08676 1.57572 0.77260 1.18138 0.89158 0.92714 1.02667 1.19846 0.98037 0.92338 1.06799 1.20319 0.93054 0.98172 1.02107 1.20587 0.98889 0.92275 1.07335 1.18082 0.91495 0.91938 0.98375 1.18782 0.92419 0.94620 0.96239 1.21131 0.92491 0.99468 0.99937 1.20698 0.98257 0.94406 0.99438 1.19594 0.94223 0.96550 0.99452 1.20658 0.93174 0.94692 0.94059 1.58737 1.14386 1.57220 1.07190 1.20842 0.92968 0.99404 1.00978 1.21194 0.98095 0.92245 0.96574 1.19445 0.92177 0.95502 1.04655 0.91908 0.80846 0.88121 0.87384 0.87461 0.86526 0.86806 0.90616 0.95001 0.84574 0.85098 0.87081 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.81 10.81 55.54 0.60 -21.21 16 2 C 0.06 1.57 5.47 -17.33 -0.09 1.48 16 3 Si 0.90 19.72 29.56 -169.99 -5.02 14.69 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.42 -11.05 7.53 -38.01 -0.29 -11.34 16 8 H 0.08 2.06 5.56 -52.49 -0.29 1.76 16 9 C 0.03 0.65 5.96 -104.83 -0.62 0.03 16 10 C -0.08 -1.89 10.77 -15.61 -0.17 -2.05 16 11 N -0.59 -12.65 5.99 -9.81 -0.06 -12.71 16 12 H 0.39 6.88 8.96 -40.82 -0.37 6.51 16 13 C 0.08 1.85 7.23 -83.92 -0.61 1.24 16 14 C -0.15 -2.81 10.06 -39.33 -0.40 -3.20 16 15 C -0.12 -2.08 10.00 -39.62 -0.40 -2.48 16 16 C -0.17 -3.23 9.62 -39.21 -0.38 -3.61 16 17 C 0.00 0.04 5.41 -104.73 -0.57 -0.53 16 18 C -0.02 -0.41 4.62 -104.91 -0.48 -0.90 16 19 C -0.11 -2.03 9.63 -39.22 -0.38 -2.40 16 20 C -0.11 -1.80 9.68 -39.63 -0.38 -2.19 16 21 C -0.10 -1.59 5.40 -104.55 -0.56 -2.15 16 22 C 0.10 1.36 6.91 -4.98 -0.03 1.33 16 23 N -0.85 -9.63 9.61 -11.41 -0.11 -9.74 16 24 C -0.12 -2.19 9.68 -39.63 -0.38 -2.57 16 25 C -0.06 -1.27 6.68 -39.23 -0.26 -1.53 16 26 C -0.11 -2.66 6.07 -104.65 -0.63 -3.30 16 27 H 0.27 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.17 4.43 6.37 -52.49 -0.33 4.10 16 29 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 32 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.34 3.75 8.99 -39.29 -0.35 3.40 16 37 H 0.34 2.98 9.08 -39.29 -0.36 2.63 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 2.77 7.79 -52.49 -0.41 2.36 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -28.58 327.58 -10.92 -39.50 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -4.62 Total: 18.71 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -6.64 Total: -34.18 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.43 Total: -43.66 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.58 -10.92 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241915034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.691 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds