Wall clock time and date at job start Tue Mar 31 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36238 * 119.94049 * 2 1 4 4 C 1.40947 * 119.87895 * 180.30896 * 3 2 1 5 5 C 1.40968 * 120.10985 * 179.72118 * 4 3 2 6 6 H 1.08003 * 119.99300 * 204.68039 * 5 4 3 7 7 C 1.40118 * 119.99852 * 24.67501 * 5 4 3 8 8 N 1.30722 * 120.00106 * 17.94140 * 7 5 4 9 9 Si 1.86804 * 119.99882 * 197.93785 * 7 5 4 10 10 H 1.48498 * 109.46962 * 59.99804 * 9 7 5 11 11 H 1.48491 * 109.47081 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46889 * 300.00414 * 9 7 5 13 13 C 1.40989 * 119.77989 * 359.69951 * 4 3 2 14 14 C 1.36197 * 119.87884 * 0.02562 * 13 4 3 15 15 C 1.40001 * 119.94256 * 179.73504 * 2 1 3 16 16 C 1.47821 * 119.88647 * 359.97438 * 15 2 1 17 17 C 1.39834 * 120.06349 * 309.72963 * 16 15 2 18 18 C 1.36318 * 120.02747 * 180.02562 * 17 16 15 19 19 C 1.40643 * 120.26410 * 359.97438 * 18 17 16 20 20 C 1.39710 * 119.54546 * 0.02562 * 19 18 17 21 21 C 1.36880 * 120.06418 * 0.02782 * 20 19 18 22 22 C 1.51015 * 109.56476 * 180.02562 * 20 19 18 23 23 C 1.53478 * 106.28587 * 0.02562 * 22 20 19 24 24 C 1.47269 * 129.81860 * 179.97438 * 19 18 17 25 25 O 1.21289 * 126.01683 * 359.97438 * 24 19 18 26 26 H 1.08994 * 109.47424 * 270.25785 * 1 2 3 27 27 H 1.09000 * 109.47127 * 30.26196 * 1 2 3 28 28 H 1.09005 * 109.47032 * 150.26153 * 1 2 3 29 29 H 1.07998 * 120.05899 * 0.02562 * 3 2 1 30 30 H 0.97006 * 119.99980 * 180.02562 * 8 7 5 31 31 H 1.07992 * 120.05737 * 180.02562 * 13 4 3 32 32 H 1.08001 * 119.93854 * 180.02562 * 14 13 4 33 33 H 1.08002 * 119.98241 * 359.97438 * 17 16 15 34 34 H 1.08000 * 119.87084 * 180.02562 * 18 17 16 35 35 H 1.07993 * 119.89353 * 179.97438 * 21 20 19 36 36 H 1.08998 * 110.09169 * 240.79175 * 22 20 19 37 37 H 1.08999 * 110.09145 * 119.20584 * 22 20 19 38 38 H 1.08999 * 110.26276 * 118.97097 * 23 22 20 39 39 H 1.09000 * 110.26260 * 240.93486 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1806 0.0000 4 6 3.5964 1.1791 -0.0066 5 6 4.3049 2.3978 -0.0126 6 1 5.3092 2.4365 -0.4079 7 6 3.7060 3.5587 0.4943 8 7 2.6633 3.4678 1.2774 9 14 4.3979 5.2363 0.0511 10 1 4.3463 5.4197 -1.4216 11 1 3.5913 6.2943 0.7107 12 1 5.8064 5.3284 0.5122 13 6 4.2954 -0.0454 -0.0067 14 6 3.6061 -1.2201 -0.0010 15 6 2.2058 -1.2131 0.0056 16 6 1.4629 -2.4911 0.0121 17 6 0.4424 -2.7034 0.9443 18 6 -0.2419 -3.8824 0.9499 19 6 0.0734 -4.8894 0.0201 20 6 1.0936 -4.6736 -0.9097 21 6 1.7797 -3.4893 -0.9124 22 6 1.2401 -5.8910 -1.7913 23 6 0.1906 -6.9012 -1.3080 24 6 -0.5202 -6.2249 -0.1612 25 8 -1.4234 -6.6990 0.4949 26 1 -0.3634 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3633 -0.8924 -0.5098 29 1 1.6470 2.1158 0.0004 30 1 2.2485 4.2716 1.6280 31 1 5.3752 -0.0518 -0.0114 32 1 4.1406 -2.1586 -0.0007 33 1 0.1969 -1.9333 1.6606 34 1 -1.0298 -4.0435 1.6707 35 1 2.5681 -3.3256 -1.6321 36 1 2.2406 -6.3108 -1.6867 37 1 1.0521 -5.6249 -2.8314 38 1 -0.5132 -7.1268 -2.1092 39 1 0.6760 -7.8146 -0.9642 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242155782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:10 Heat of formation + Delta-G solvation = -22.057771 kcal Electronic energy + Delta-G solvation = -21714.934272 eV Core-core repulsion = 18550.412072 eV Total energy + Delta-G solvation = -3164.522200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50994 -40.02477 -38.78939 -36.38283 -35.35767 -33.44626 -32.69399 -31.09050 -29.82579 -27.67021 -27.52474 -26.09225 -24.03477 -22.57574 -22.00341 -20.94176 -20.85037 -19.04506 -17.57911 -17.21701 -16.97991 -16.67600 -16.51834 -15.66798 -15.53307 -15.12935 -14.96050 -14.55658 -14.46058 -14.43128 -13.94072 -13.79244 -13.66096 -13.48491 -13.21075 -13.02444 -12.94990 -12.78508 -12.58740 -12.36692 -12.09917 -12.01518 -11.79179 -11.45442 -11.30410 -11.06743 -10.65915 -9.94981 -9.71302 -9.27806 -8.98592 -8.68783 -6.35562 -0.42209 0.50364 0.85239 1.17729 1.36953 1.40890 1.49312 1.61124 2.17534 2.63075 2.89276 3.06328 3.57243 3.68263 3.82382 3.96634 4.19340 4.20939 4.31385 4.36311 4.39505 4.44264 4.57733 4.66117 4.79992 4.84685 4.91171 4.97599 5.03448 5.08291 5.10617 5.10925 5.18662 5.30907 5.39075 5.44995 5.48346 5.64843 5.73210 5.87664 6.08717 6.09730 6.23275 6.33875 6.52835 6.64718 6.87318 7.00372 8.24450 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.038281 B = 0.003270 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.266898 B = 8560.067496 C = 9022.117577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.053 4.053 3 C -0.193 4.193 4 C 0.090 3.910 5 C -0.490 4.490 6 H 0.079 0.921 7 C 0.037 3.963 8 N -0.812 5.812 9 Si 0.982 3.018 10 H -0.260 1.260 11 H -0.267 1.267 12 H -0.258 1.258 13 C -0.250 4.250 14 C -0.061 4.061 15 C -0.208 4.208 16 C 0.043 3.957 17 C -0.148 4.148 18 C -0.052 4.052 19 C -0.243 4.243 20 C -0.033 4.033 21 C -0.137 4.137 22 C -0.078 4.078 23 C -0.160 4.160 24 C 0.405 3.595 25 O -0.497 6.497 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.291 0.709 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -12.231 -5.802 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.053 4.053 3 C -0.213 4.213 4 C 0.087 3.913 5 C -0.519 4.519 6 H 0.098 0.902 7 C -0.180 4.180 8 N -0.436 5.436 9 Si 0.802 3.198 10 H -0.184 1.184 11 H -0.191 1.191 12 H -0.183 1.183 13 C -0.269 4.269 14 C -0.079 4.079 15 C -0.209 4.209 16 C 0.043 3.957 17 C -0.166 4.166 18 C -0.070 4.070 19 C -0.244 4.244 20 C -0.033 4.033 21 C -0.155 4.155 22 C -0.114 4.114 23 C -0.197 4.197 24 C 0.288 3.712 25 O -0.376 6.376 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.336 -12.340 -5.317 13.845 hybrid contribution 0.364 1.399 0.405 1.502 sum -2.972 -10.941 -4.912 12.356 Atomic orbital electron populations 1.20755 0.91481 1.01666 1.01633 1.19610 0.95612 0.92425 0.97679 1.20828 0.94308 0.96456 1.09673 1.18043 0.92739 0.93133 0.87344 1.19901 1.01904 0.93639 1.36413 0.90242 1.26825 0.94328 1.05086 0.91782 1.69824 1.18979 1.33240 1.21584 0.85247 0.79358 0.75406 0.79748 1.18386 1.19130 1.18264 1.20840 0.98308 0.92803 1.14991 1.20575 0.92931 0.96978 0.97414 1.18218 0.92625 0.90877 1.19173 1.19066 0.92315 0.92144 0.92221 1.21009 0.97817 0.97754 1.00066 1.20888 0.97674 0.91866 0.96577 1.21360 1.03175 0.98067 1.01772 1.20554 0.92719 0.95087 0.94948 1.20590 1.02103 0.92610 1.00174 1.20945 1.01041 0.89985 0.99453 1.22337 0.99432 1.00365 0.97530 1.23051 0.79488 0.85783 0.82905 1.90508 1.27518 1.70961 1.48651 0.91530 0.92574 0.91531 0.87969 0.89803 0.88236 0.86506 0.85949 0.85471 0.84813 0.86950 0.87036 0.85356 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.66 8.43 71.24 0.60 -3.06 16 2 C -0.05 -2.37 5.83 -19.90 -0.12 -2.49 16 3 C -0.19 -9.90 8.26 22.47 0.19 -9.71 16 4 C 0.09 4.74 5.57 -21.27 -0.12 4.62 16 5 C -0.49 -25.67 9.03 23.40 0.21 -25.46 16 6 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 7 C 0.04 1.79 5.13 85.31 0.44 2.23 16 8 N -0.81 -41.13 10.96 21.85 0.24 -40.89 16 9 Si 0.98 36.73 29.60 68.60 2.03 38.76 16 10 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 11 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 12 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 13 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 14 C -0.06 -2.59 9.42 22.23 0.21 -2.38 16 15 C -0.21 -8.67 5.49 -19.88 -0.11 -8.78 16 16 C 0.04 1.49 4.71 -20.00 -0.09 1.39 16 17 C -0.15 -4.86 7.83 22.21 0.17 -4.69 16 18 C -0.05 -1.55 10.05 22.41 0.23 -1.33 16 19 C -0.24 -6.66 6.12 -19.96 -0.12 -6.78 16 20 C -0.03 -0.79 6.15 -19.73 -0.12 -0.91 16 21 C -0.14 -3.97 9.44 22.30 0.21 -3.76 16 22 C -0.08 -1.10 6.80 30.11 0.20 -0.90 16 23 C -0.16 -2.25 6.85 30.08 0.21 -2.04 16 24 C 0.41 10.09 7.77 28.13 0.22 10.31 16 25 O -0.50 -15.71 18.03 -3.06 -0.06 -15.77 16 26 H 0.07 2.33 7.49 -2.39 -0.02 2.31 16 27 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 28 H 0.07 2.27 6.45 -2.38 -0.02 2.25 16 29 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 30 H 0.29 13.31 8.29 -92.70 -0.77 12.54 16 31 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.12 4.23 8.03 -2.91 -0.02 4.21 16 33 H 0.12 4.06 6.85 -2.91 -0.02 4.04 16 34 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.13 3.58 8.03 -2.91 -0.02 3.55 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.12 328.51 5.70 -56.42 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.07 Total: 26.93 kcal Atomic # 6 Polarization: -67.87 SS G_CDS: 2.42 Total: -65.45 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.24 Total: -40.89 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.06 Total: -15.77 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -62.12 5.70 -56.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242155782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.358 kcal (2) G-P(sol) polarization free energy of solvation -62.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds